| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_015456 |
Definition |
Shigella phage Shfl1, complete genome. |
Molecule type |
DNA |
Genome structure |
circular |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Drexlerviridae; Tunavirinae; Tunavirus. |
DB of origin |
REFSEQ |
Length |
50661 |
Host Name |
Shigella flexneri |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
80 |
%GC |
45.4 |
Number of singletons |
2 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_004414882.1 | NC_015456_p63 | hypothetical protein | phrog_4788 | unknown function | unknown function | 1 | 42811 | 42987 |
| YP_004414868.1 | NC_015456_p49 | phage lipoprotein | phrog_4281 | unknown function | unknown function | -1 | 30837 | 31067 |
| YP_004414858.1 | NC_015456_p39 | major tail protein | phrog_584 | major tail protein | tail | 1 | 19452 | 20120 |
| YP_004414843.1 | NC_015456_p24 | hypothetical protein | phrog_2919 | unknown function | unknown function | 1 | 9269 | 9412 |
| YP_004414836.1 | NC_015456_p17 | polynucleotide kinase/phosphatase | phrog_415 | polynucleotide kinase | other | 1 | 6650 | 7183 |
| YP_004414834.1 | NC_015456_p15 | hypothetical protein | phrog_10642 | unknown function | unknown function | 1 | 5918 | 6364 |
| YP_004414840.1 | NC_015456_p21 | hypothetical protein | phrog_303 | unknown function | unknown function | 1 | 8487 | 8717 |
| YP_004414855.1 | NC_015456_p36 | hypothetical protein | phrog_161 | head closure Hc1 | connector | 1 | 18254 | 18625 |
| YP_004414853.1 | NC_015456_p34 | hypothetical protein | phrog_2716 | unknown function | unknown function | 1 | 17512 | 17799 |
| YP_004414821.1 | NC_015456_p2 | hypothetical protein | phrog_7421 | unknown function | unknown function | 1 | 1075 | 1269 |
| YP_004414847.1 | NC_015456_p28 | portal protein | phrog_146 | portal protein | head and packaging | 1 | 11912 | 13195 |
| YP_004414837.1 | NC_015456_p18 | hypothetical protein | phrog_139 | deoxynucleoside monophosphate kinase | other | 1 | 7292 | 7864 |
| YP_004414866.1 | NC_015456_p47 | tail fiber protein | phrog_31 | central tail fiber J | tail | 1 | 26402 | 29851 |
| YP_004414830.1 | NC_015456_p11 | hypothetical protein | phrog_7116 | unknown function | unknown function | 1 | 3748 | 4233 |
| YP_004414891.1 | NC_015456_p72 | hypothetical protein | phrog_3955 | unknown function | unknown function | -1 | 47402 | 47545 |
| YP_004414892.1 | NC_015456_p73 | hypothetical protein | phrog_10555 | unknown function | unknown function | -1 | 47542 | 47862 |
| YP_004414833.1 | NC_015456_p14 | hypothetical protein | phrog_10580 | unknown function | unknown function | 1 | 4855 | 5493 |
| YP_004414867.1 | NC_015456_p48 | hypothetical protein | phrog_1265 | membrane protein | moron, auxiliary metabolic gene and host takeover | -1 | 29878 | 30834 |
| YP_004414823.1 | NC_015456_p4 | hypothetical protein | singleton | unknown function | unknown function | -1 | 1729 | 1959 |
| YP_004414881.1 | NC_015456_p62 | hypothetical protein | phrog_704 | DNA repair exonuclease | DNA, RNA and nucleotide metabolism | 1 | 41594 | 42745 |
| YP_004414827.1 | NC_015456_p8 | hypothetical protein | phrog_11551 | unknown function | unknown function | 1 | 2709 | 2900 |
| YP_004414841.1 | NC_015456_p22 | hypothetical protein | phrog_4927 | unknown function | unknown function | 1 | 8717 | 8920 |
| YP_004414890.1 | NC_015456_p71 | hypothetical protein | phrog_4344 | unknown function | unknown function | -1 | 47100 | 47324 |
| YP_004414873.1 | NC_015456_p54 | DNA primase | phrog_510 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 35754 | 36689 |
| YP_004414895.1 | NC_015456_p76 | hypothetical protein | singleton | unknown function | unknown function | -1 | 48515 | 48679 |
| YP_004414863.1 | NC_015456_p44 | minor tail protein | phrog_18 | minor tail protein | tail | 1 | 24215 | 24997 |
| YP_004414839.1 | NC_015456_p20 | hypothetical protein | phrog_9709 | unknown function | unknown function | 1 | 8143 | 8487 |
| YP_004414862.1 | NC_015456_p43 | minor tail protein | phrog_14 | minor tail protein | tail | 1 | 23783 | 24136 |
| YP_004414878.1 | NC_015456_p59 | hypothetical protein | phrog_2676 | unknown function | unknown function | 1 | 40509 | 40757 |
| YP_004414896.1 | NC_015456_p77 | hypothetical protein | phrog_20265 | unknown function | unknown function | -1 | 48676 | 49056 |
| YP_004414828.1 | NC_015456_p9 | hypothetical protein | phrog_9122 | unknown function | unknown function | 1 | 2971 | 3177 |
| YP_004414898.1 | NC_015456_p79 | site specific DNA methylase | phrog_757 | DNA methyltransferase | other | -1 | 49532 | 50236 |
| YP_004414835.1 | NC_015456_p16 | hypothetical protein | phrog_29229 | unknown function | unknown function | 1 | 6447 | 6650 |
| YP_004414822.1 | NC_015456_p3 | hypothetical protein | phrog_12951 | unknown function | unknown function | 1 | 1272 | 1739 |
| YP_004414844.1 | NC_015456_p25 | hypothetical protein | phrog_5976 | unknown function | unknown function | 1 | 9414 | 9641 |
| YP_004414842.1 | NC_015456_p23 | hypothetical protein | phrog_6666 | unknown function | unknown function | 1 | 9085 | 9246 |
| YP_004414894.1 | NC_015456_p75 | hypothetical protein | phrog_11577 | unknown function | unknown function | -1 | 48072 | 48443 |
| YP_004414888.1 | NC_015456_p69 | hypothetical protein | phrog_2684 | unknown function | unknown function | -1 | 46390 | 46806 |
| YP_004414877.1 | NC_015456_p58 | Dam methylase | phrog_111 | DNA methyltransferase | other | 1 | 39796 | 40509 |
| YP_004414829.1 | NC_015456_p10 | hypothetical protein | phrog_9595 | unknown function | unknown function | 1 | 3188 | 3676 |
| YP_004414846.1 | NC_015456_p27 | terminase large subunit | phrog_38 | terminase large subunit | head and packaging | 1 | 10289 | 11857 |
| YP_004414831.1 | NC_015456_p12 | hypothetical protein | phrog_18601 | unknown function | unknown function | 1 | 4381 | 4587 |
| YP_004414864.1 | NC_015456_p45 | minor tail protein | phrog_30 | minor tail protein | tail | 1 | 24994 | 25728 |
| YP_004414897.1 | NC_015456_p78 | hypothetical protein | phrog_29431 | unknown function | unknown function | -1 | 49131 | 49466 |
| YP_004414849.1 | NC_015456_p30 | major head subunit precursor | phrog_530 | head maturation protease | head and packaging | 1 | 13949 | 15061 |
| YP_004414860.1 | NC_015456_p41 | hypothetical protein | phrog_680 | tail length tape measure protein | tail | 1 | 20671 | 20868 |
| YP_004414825.1 | NC_015456_p6 | hypothetical protein | phrog_6080 | unknown function | unknown function | 1 | 2243 | 2422 |
| YP_004414872.1 | NC_015456_p53 | tail fiber | phrog_1980 | tail fiber protein | tail | -1 | 33869 | 35653 |
| YP_004414850.1 | NC_015456_p31 | hypothetical protein | phrog_1989 | unknown function | unknown function | 1 | 15073 | 15549 |
| YP_004414826.1 | NC_015456_p7 | hypothetical protein | phrog_8628 | unknown function | unknown function | 1 | 2526 | 2699 |
| YP_004414852.1 | NC_015456_p33 | hypothetical protein | phrog_264 | major head protein | head and packaging | 1 | 16502 | 17461 |
| YP_004414885.1 | NC_015456_p66 | hypothetical protein | phrog_1804 | Rz-like spanin | lysis | 1 | 43810 | 44211 |
| YP_004414869.1 | NC_015456_p50 | exodeoxyribonuclease VIII | phrog_412 | exonuclease VIII | DNA, RNA and nucleotide metabolism | 1 | 31594 | 32658 |
| YP_004414865.1 | NC_015456_p46 | tail assembly protein | phrog_32 | tail assembly protein | tail | 1 | 25725 | 26324 |
| YP_004414887.1 | NC_015456_p68 | hypothetical protein | phrog_2373 | DNA helicase | DNA, RNA and nucleotide metabolism | -1 | 44745 | 46313 |
| YP_004414874.1 | NC_015456_p55 | hypothetical protein | phrog_2856 | transcriptional regulator | transcription regulation | -1 | 36750 | 37202 |
| YP_004414893.1 | NC_015456_p74 | hypothetical protein | phrog_6503 | unknown function | unknown function | -1 | 47879 | 48079 |
| YP_004414861.1 | NC_015456_p42 | tail tape measure protein | phrog_24 | tail length tape measure protein | tail | 1 | 20907 | 23780 |
| YP_004414832.1 | NC_015456_p13 | hypothetical protein | phrog_986 | RNA-binding protein | DNA, RNA and nucleotide metabolism | 1 | 4622 | 4858 |
| YP_004414880.1 | NC_015456_p61 | hypothetical protein | phrog_4596 | unknown function | unknown function | 1 | 41228 | 41515 |
| YP_004414857.1 | NC_015456_p38 | hypothetical protein | phrog_179 | tail terminator | connector | 1 | 19051 | 19449 |
| YP_004414870.1 | NC_015456_p51 | recombination protein | phrog_155 | Erf-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 32733 | 33380 |
| YP_004414851.1 | NC_015456_p32 | hypothetical protein | phrog_1989 | unknown function | unknown function | 1 | 15610 | 16410 |
| YP_004414875.1 | NC_015456_p56 | ATP-dependent helicase | phrog_16 | DNA helicase | DNA, RNA and nucleotide metabolism | 1 | 37297 | 39315 |
| YP_004414879.1 | NC_015456_p60 | hypothetical protein | phrog_2180 | unknown function | unknown function | 1 | 40824 | 41033 |
| YP_004414883.1 | NC_015456_p64 | holin | phrog_2877 | holin | lysis | 1 | 43107 | 43322 |
| YP_004414871.1 | NC_015456_p52 | hypothetical protein | phrog_44 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 33427 | 33840 |
| YP_004414824.1 | NC_015456_p5 | hypothetical protein | phrog_11449 | unknown function | unknown function | 1 | 1958 | 2188 |
| YP_004414838.1 | NC_015456_p19 | hypothetical protein | phrog_10456 | unknown function | unknown function | 1 | 7937 | 8146 |
| YP_004414859.1 | NC_015456_p40 | hypothetical protein | phrog_569 | tail length tape measure protein | tail | 1 | 20234 | 20551 |
| YP_004414848.1 | NC_015456_p29 | hypothetical protein | phrog_324 | head morphogenesis | head and packaging | 1 | 13185 | 13946 |
| YP_004414845.1 | NC_015456_p26 | terminase small subunit | phrog_606 | terminase small subunit | head and packaging | 1 | 9726 | 10250 |
| YP_004414886.1 | NC_015456_p67 | hypothetical protein | phrog_2794 | unknown function | unknown function | -1 | 44333 | 44740 |
| YP_004414856.1 | NC_015456_p37 | hypothetical protein | phrog_169 | tail completion or Neck1 protein | connector | 1 | 18618 | 19061 |
| YP_004414884.1 | NC_015456_p65 | endolysin | phrog_7 | endolysin | lysis | 1 | 43322 | 43810 |
| YP_004414899.1 | NC_015456_p80 | hypothetical protein | phrog_16851 | unknown function | unknown function | -1 | 50233 | 50445 |
| YP_004414876.1 | NC_015456_p57 | hypothetical protein | phrog_824 | unknown function | unknown function | 1 | 39312 | 39728 |
| YP_004414820.1 | NC_015456_p1 | hypothetical protein | phrog_11083 | unknown function | unknown function | 1 | 470 | 985 |
| YP_004414889.1 | NC_015456_p70 | hypothetical protein | phrog_9085 | unknown function | unknown function | -1 | 46887 | 47096 |
| YP_004414854.1 | NC_015456_p35 | hypothetical protein | phrog_302 | virion structural protein | head and packaging | 1 | 17844 | 18257 |