Genomic map of Shigella virus Shfl1 (NC_015456)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_015456
Definition
Shigella phage Shfl1, complete genome.
Molecule type
DNA
Genome structure
circular
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Drexlerviridae; Tunavirinae; Tunavirus.
DB of origin
REFSEQ
Length
50661
Host Name
Shigella flexneri
Host domain
Bacteria
Is prophage?
undef
Number of proteins
80
%GC
45.4
Number of singletons
2
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_004414882.1 NC_015456_p63 hypothetical protein phrog_4788 unknown function unknown function 1 42811 42987
YP_004414868.1 NC_015456_p49 phage lipoprotein phrog_4281 unknown function unknown function -1 30837 31067
YP_004414858.1 NC_015456_p39 major tail protein phrog_584 major tail protein tail 1 19452 20120
YP_004414843.1 NC_015456_p24 hypothetical protein phrog_2919 unknown function unknown function 1 9269 9412
YP_004414836.1 NC_015456_p17 polynucleotide kinase/phosphatase phrog_415 polynucleotide kinase other 1 6650 7183
YP_004414834.1 NC_015456_p15 hypothetical protein phrog_10642 unknown function unknown function 1 5918 6364
YP_004414840.1 NC_015456_p21 hypothetical protein phrog_303 unknown function unknown function 1 8487 8717
YP_004414855.1 NC_015456_p36 hypothetical protein phrog_161 head closure Hc1 connector 1 18254 18625
YP_004414853.1 NC_015456_p34 hypothetical protein phrog_2716 unknown function unknown function 1 17512 17799
YP_004414821.1 NC_015456_p2 hypothetical protein phrog_7421 unknown function unknown function 1 1075 1269
YP_004414847.1 NC_015456_p28 portal protein phrog_146 portal protein head and packaging 1 11912 13195
YP_004414837.1 NC_015456_p18 hypothetical protein phrog_139 deoxynucleoside monophosphate kinase other 1 7292 7864
YP_004414866.1 NC_015456_p47 tail fiber protein phrog_31 central tail fiber J tail 1 26402 29851
YP_004414830.1 NC_015456_p11 hypothetical protein phrog_7116 unknown function unknown function 1 3748 4233
YP_004414891.1 NC_015456_p72 hypothetical protein phrog_3955 unknown function unknown function -1 47402 47545
YP_004414892.1 NC_015456_p73 hypothetical protein phrog_10555 unknown function unknown function -1 47542 47862
YP_004414833.1 NC_015456_p14 hypothetical protein phrog_10580 unknown function unknown function 1 4855 5493
YP_004414867.1 NC_015456_p48 hypothetical protein phrog_1265 membrane protein moron, auxiliary metabolic gene and host takeover -1 29878 30834
YP_004414823.1 NC_015456_p4 hypothetical protein singleton unknown function unknown function -1 1729 1959
YP_004414881.1 NC_015456_p62 hypothetical protein phrog_704 DNA repair exonuclease DNA, RNA and nucleotide metabolism 1 41594 42745
YP_004414827.1 NC_015456_p8 hypothetical protein phrog_11551 unknown function unknown function 1 2709 2900
YP_004414841.1 NC_015456_p22 hypothetical protein phrog_4927 unknown function unknown function 1 8717 8920
YP_004414890.1 NC_015456_p71 hypothetical protein phrog_4344 unknown function unknown function -1 47100 47324
YP_004414873.1 NC_015456_p54 DNA primase phrog_510 DNA primase DNA, RNA and nucleotide metabolism -1 35754 36689
YP_004414895.1 NC_015456_p76 hypothetical protein singleton unknown function unknown function -1 48515 48679
YP_004414863.1 NC_015456_p44 minor tail protein phrog_18 minor tail protein tail 1 24215 24997
YP_004414839.1 NC_015456_p20 hypothetical protein phrog_9709 unknown function unknown function 1 8143 8487
YP_004414862.1 NC_015456_p43 minor tail protein phrog_14 minor tail protein tail 1 23783 24136
YP_004414878.1 NC_015456_p59 hypothetical protein phrog_2676 unknown function unknown function 1 40509 40757
YP_004414896.1 NC_015456_p77 hypothetical protein phrog_20265 unknown function unknown function -1 48676 49056
YP_004414828.1 NC_015456_p9 hypothetical protein phrog_9122 unknown function unknown function 1 2971 3177
YP_004414898.1 NC_015456_p79 site specific DNA methylase phrog_757 DNA methyltransferase other -1 49532 50236
YP_004414835.1 NC_015456_p16 hypothetical protein phrog_29229 unknown function unknown function 1 6447 6650
YP_004414822.1 NC_015456_p3 hypothetical protein phrog_12951 unknown function unknown function 1 1272 1739
YP_004414844.1 NC_015456_p25 hypothetical protein phrog_5976 unknown function unknown function 1 9414 9641
YP_004414842.1 NC_015456_p23 hypothetical protein phrog_6666 unknown function unknown function 1 9085 9246
YP_004414894.1 NC_015456_p75 hypothetical protein phrog_11577 unknown function unknown function -1 48072 48443
YP_004414888.1 NC_015456_p69 hypothetical protein phrog_2684 unknown function unknown function -1 46390 46806
YP_004414877.1 NC_015456_p58 Dam methylase phrog_111 DNA methyltransferase other 1 39796 40509
YP_004414829.1 NC_015456_p10 hypothetical protein phrog_9595 unknown function unknown function 1 3188 3676
YP_004414846.1 NC_015456_p27 terminase large subunit phrog_38 terminase large subunit head and packaging 1 10289 11857
YP_004414831.1 NC_015456_p12 hypothetical protein phrog_18601 unknown function unknown function 1 4381 4587
YP_004414864.1 NC_015456_p45 minor tail protein phrog_30 minor tail protein tail 1 24994 25728
YP_004414897.1 NC_015456_p78 hypothetical protein phrog_29431 unknown function unknown function -1 49131 49466
YP_004414849.1 NC_015456_p30 major head subunit precursor phrog_530 head maturation protease head and packaging 1 13949 15061
YP_004414860.1 NC_015456_p41 hypothetical protein phrog_680 tail length tape measure protein tail 1 20671 20868
YP_004414825.1 NC_015456_p6 hypothetical protein phrog_6080 unknown function unknown function 1 2243 2422
YP_004414872.1 NC_015456_p53 tail fiber phrog_1980 tail fiber protein tail -1 33869 35653
YP_004414850.1 NC_015456_p31 hypothetical protein phrog_1989 unknown function unknown function 1 15073 15549
YP_004414826.1 NC_015456_p7 hypothetical protein phrog_8628 unknown function unknown function 1 2526 2699
YP_004414852.1 NC_015456_p33 hypothetical protein phrog_264 major head protein head and packaging 1 16502 17461
YP_004414885.1 NC_015456_p66 hypothetical protein phrog_1804 Rz-like spanin lysis 1 43810 44211
YP_004414869.1 NC_015456_p50 exodeoxyribonuclease VIII phrog_412 exonuclease VIII DNA, RNA and nucleotide metabolism 1 31594 32658
YP_004414865.1 NC_015456_p46 tail assembly protein phrog_32 tail assembly protein tail 1 25725 26324
YP_004414887.1 NC_015456_p68 hypothetical protein phrog_2373 DNA helicase DNA, RNA and nucleotide metabolism -1 44745 46313
YP_004414874.1 NC_015456_p55 hypothetical protein phrog_2856 transcriptional regulator transcription regulation -1 36750 37202
YP_004414893.1 NC_015456_p74 hypothetical protein phrog_6503 unknown function unknown function -1 47879 48079
YP_004414861.1 NC_015456_p42 tail tape measure protein phrog_24 tail length tape measure protein tail 1 20907 23780
YP_004414832.1 NC_015456_p13 hypothetical protein phrog_986 RNA-binding protein DNA, RNA and nucleotide metabolism 1 4622 4858
YP_004414880.1 NC_015456_p61 hypothetical protein phrog_4596 unknown function unknown function 1 41228 41515
YP_004414857.1 NC_015456_p38 hypothetical protein phrog_179 tail terminator connector 1 19051 19449
YP_004414870.1 NC_015456_p51 recombination protein phrog_155 Erf-like ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 32733 33380
YP_004414851.1 NC_015456_p32 hypothetical protein phrog_1989 unknown function unknown function 1 15610 16410
YP_004414875.1 NC_015456_p56 ATP-dependent helicase phrog_16 DNA helicase DNA, RNA and nucleotide metabolism 1 37297 39315
YP_004414879.1 NC_015456_p60 hypothetical protein phrog_2180 unknown function unknown function 1 40824 41033
YP_004414883.1 NC_015456_p64 holin phrog_2877 holin lysis 1 43107 43322
YP_004414871.1 NC_015456_p52 hypothetical protein phrog_44 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 33427 33840
YP_004414824.1 NC_015456_p5 hypothetical protein phrog_11449 unknown function unknown function 1 1958 2188
YP_004414838.1 NC_015456_p19 hypothetical protein phrog_10456 unknown function unknown function 1 7937 8146
YP_004414859.1 NC_015456_p40 hypothetical protein phrog_569 tail length tape measure protein tail 1 20234 20551
YP_004414848.1 NC_015456_p29 hypothetical protein phrog_324 head morphogenesis head and packaging 1 13185 13946
YP_004414845.1 NC_015456_p26 terminase small subunit phrog_606 terminase small subunit head and packaging 1 9726 10250
YP_004414886.1 NC_015456_p67 hypothetical protein phrog_2794 unknown function unknown function -1 44333 44740
YP_004414856.1 NC_015456_p37 hypothetical protein phrog_169 tail completion or Neck1 protein connector 1 18618 19061
YP_004414884.1 NC_015456_p65 endolysin phrog_7 endolysin lysis 1 43322 43810
YP_004414899.1 NC_015456_p80 hypothetical protein phrog_16851 unknown function unknown function -1 50233 50445
YP_004414876.1 NC_015456_p57 hypothetical protein phrog_824 unknown function unknown function 1 39312 39728
YP_004414820.1 NC_015456_p1 hypothetical protein phrog_11083 unknown function unknown function 1 470 985
YP_004414889.1 NC_015456_p70 hypothetical protein phrog_9085 unknown function unknown function -1 46887 47096
YP_004414854.1 NC_015456_p35 hypothetical protein phrog_302 virion structural protein head and packaging 1 17844 18257