| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_015463 |
Definition |
Synechococcus phage S-CBS2, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae. |
DB of origin |
REFSEQ |
Length |
72332 |
Host Name |
Synechococcus sp. |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
102 |
%GC |
54.47 |
Number of singletons |
55 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_004421483.1 | NC_015463_p29 | hypothetical protein | singleton | unknown function | unknown function | 1 | 20039 | 21541 |
| YP_004421498.1 | NC_015463_p44 | hypothetical protein | phrog_12220 | unknown function | unknown function | 1 | 33607 | 33918 |
| YP_004421491.1 | NC_015463_p37 | hypothetical protein | phrog_953 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 30293 | 30769 |
| YP_004421506.1 | NC_015463_p52 | triple helix repeat-containing collagen | singleton | unknown function | unknown function | 1 | 38798 | 39916 |
| YP_004421551.1 | NC_015463_p97 | hypothetical protein | singleton | unknown function | unknown function | 1 | 70252 | 70518 |
| YP_004421547.1 | NC_015463_p93 | hypothetical protein | singleton | unknown function | unknown function | 1 | 68764 | 68910 |
| YP_004421488.1 | NC_015463_p34 | RNA polymerase-like protein | singleton | unknown function | unknown function | 1 | 28283 | 28702 |
| YP_004421504.1 | NC_015463_p50 | unknown structural protein | singleton | unknown function | unknown function | 1 | 36178 | 37566 |
| YP_004421505.1 | NC_015463_p51 | head decoration protein | singleton | unknown function | unknown function | 1 | 37607 | 38731 |
| YP_004421525.1 | NC_015463_p71 | endodeoxyribonuclease RusA | phrog_140 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 52103 | 52474 |
| YP_004421464.1 | NC_015463_p10 | hypothetical protein | singleton | unknown function | unknown function | 1 | 6879 | 7151 |
| YP_004421512.1 | NC_015463_p58 | hypothetical protein | singleton | unknown function | unknown function | 1 | 46373 | 46714 |
| YP_004421482.1 | NC_015463_p28 | hypothetical protein | singleton | unknown function | unknown function | 1 | 19694 | 20008 |
| YP_004421545.1 | NC_015463_p91 | hypothetical protein | singleton | unknown function | unknown function | 1 | 68289 | 68420 |
| YP_004421472.1 | NC_015463_p18 | unknown structural protein | singleton | unknown function | unknown function | 1 | 10983 | 11420 |
| YP_004421501.1 | NC_015463_p47 | hypothetical protein | phrog_374 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 34705 | 35154 |
| YP_004421495.1 | NC_015463_p41 | hypothetical protein | singleton | unknown function | unknown function | 1 | 32550 | 32918 |
| YP_004421457.1 | NC_015463_p3 | hypothetical protein | phrog_704 | DNA repair exonuclease | DNA, RNA and nucleotide metabolism | 1 | 1190 | 2323 |
| YP_004421508.1 | NC_015463_p54 | lysozyme | phrog_7 | endolysin | lysis | 1 | 41524 | 42675 |
| YP_004421535.1 | NC_015463_p81 | hypothetical protein | singleton | unknown function | unknown function | 1 | 60989 | 61165 |
| YP_004421455.1 | NC_015463_p1 | hypothetical protein | singleton | unknown function | unknown function | 1 | 425 | 793 |
| YP_004421540.1 | NC_015463_p86 | peptidase | singleton | unknown function | unknown function | 1 | 62953 | 63258 |
| YP_004421496.1 | NC_015463_p42 | hypothetical protein | phrog_3281 | endonuclease VII | DNA, RNA and nucleotide metabolism | 1 | 32976 | 33323 |
| YP_004421500.1 | NC_015463_p46 | hypothetical protein | phrog_7595 | unknown function | unknown function | 1 | 34369 | 34659 |
| YP_004421541.1 | NC_015463_p87 | class II ribonucleotide reductase | phrog_367 | ribonucleotide reductase | DNA, RNA and nucleotide metabolism | 1 | 63346 | 65646 |
| YP_004421490.1 | NC_015463_p36 | host specific protein J | phrog_206 | head scaffolding protein | head and packaging | 1 | 29477 | 30208 |
| YP_004421539.1 | NC_015463_p85 | hypothetical protein | singleton | unknown function | unknown function | 1 | 62447 | 62599 |
| YP_004421502.1 | NC_015463_p48 | hypothetical protein | singleton | unknown function | unknown function | -1 | 35634 | 35945 |
| YP_004421489.1 | NC_015463_p35 | hypothetical protein | singleton | unknown function | unknown function | 1 | 28704 | 29429 |
| YP_004421519.1 | NC_015463_p65 | hypothetical protein | phrog_32006 | unknown function | unknown function | 1 | 49875 | 50180 |
| YP_004421524.1 | NC_015463_p70 | DprA superfamily protein | phrog_23875 | DprA-like DNA recombination-mediator protein | DNA, RNA and nucleotide metabolism | 1 | 51457 | 52002 |
| YP_004421479.1 | NC_015463_p25 | unknown structural protein | singleton | unknown function | unknown function | 1 | 18485 | 19213 |
| YP_004421552.1 | NC_015463_p98 | hypothetical protein | singleton | unknown function | unknown function | 1 | 70550 | 70765 |
| YP_004421518.1 | NC_015463_p64 | hypothetical protein | phrog_34992 | unknown function | unknown function | 1 | 49417 | 49866 |
| YP_004421532.1 | NC_015463_p78 | DNA primase | phrog_6444 | DNA primase | DNA, RNA and nucleotide metabolism | 1 | 57584 | 59188 |
| YP_004421463.1 | NC_015463_p9 | hypothetical protein | singleton | unknown function | unknown function | 1 | 5944 | 6876 |
| YP_004421466.1 | NC_015463_p12 | hypothetical protein | singleton | unknown function | unknown function | 1 | 7858 | 8103 |
| YP_004421486.1 | NC_015463_p32 | structural protein | singleton | unknown function | unknown function | 1 | 25127 | 27178 |
| YP_004421485.1 | NC_015463_p31 | structural protein | phrog_9627 | unknown function | unknown function | 1 | 23009 | 25093 |
| YP_004421554.1 | NC_015463_p100 | hypothetical protein | singleton | unknown function | unknown function | -1 | 71097 | 71402 |
| YP_004421522.1 | NC_015463_p68 | hypothetical protein | singleton | unknown function | unknown function | 1 | 50589 | 50852 |
| YP_004421514.1 | NC_015463_p60 | hypothetical protein | phrog_21418 | unknown function | unknown function | 1 | 46970 | 47674 |
| YP_004421543.1 | NC_015463_p89 | hypothetical protein | phrog_145 | portal protein | head and packaging | 1 | 66329 | 68002 |
| YP_004421465.1 | NC_015463_p11 | hypothetical protein | singleton | unknown function | unknown function | 1 | 7417 | 7821 |
| YP_004421484.1 | NC_015463_p30 | structural protein | singleton | unknown function | unknown function | 1 | 21569 | 22981 |
| YP_004421462.1 | NC_015463_p8 | excinuclease ABC subunit | phrog_24743 | unknown function | unknown function | -1 | 5381 | 5743 |
| YP_004421555.1 | NC_015463_p101 | hypothetical protein | singleton | unknown function | unknown function | 1 | 71426 | 71602 |
| YP_004421523.1 | NC_015463_p69 | hypothetical protein | phrog_236 | nucleotide kinase | other | 1 | 50849 | 51460 |
| YP_004421459.1 | NC_015463_p5 | DNA methylase | phrog_116 | DNA methyltransferase | other | -1 | 2566 | 3426 |
| YP_004421538.1 | NC_015463_p84 | hypothetical protein | singleton | unknown function | unknown function | 1 | 62214 | 62450 |
| YP_004421471.1 | NC_015463_p17 | HNH endonuclease | phrog_2214 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 10394 | 10858 |
| YP_004421534.1 | NC_015463_p80 | hypothetical protein | phrog_18407 | unknown function | unknown function | 1 | 60428 | 60910 |
| YP_004421475.1 | NC_015463_p21 | tail tape measure protein | singleton | unknown function | unknown function | 1 | 12450 | 15320 |
| YP_004421480.1 | NC_015463_p26 | hypothetical protein | singleton | unknown function | unknown function | 1 | 19216 | 19479 |
| YP_004421476.1 | NC_015463_p22 | hypothetical protein | singleton | unknown function | unknown function | 1 | 15317 | 15760 |
| YP_004421497.1 | NC_015463_p43 | hypothetical protein | singleton | unknown function | unknown function | 1 | 33383 | 33556 |
| YP_004421499.1 | NC_015463_p45 | hypothetical protein | phrog_6437 | unknown function | unknown function | 1 | 33911 | 34225 |
| YP_004421521.1 | NC_015463_p67 | hypothetical protein | phrog_31413 | unknown function | unknown function | 1 | 50369 | 50596 |
| YP_004421481.1 | NC_015463_p27 | hypothetical protein | singleton | unknown function | unknown function | 1 | 19482 | 19694 |
| YP_004421494.1 | NC_015463_p40 | high light inducible protein | phrog_178 | high light inducible protein | other | 1 | 32303 | 32437 |
| YP_004421526.1 | NC_015463_p72 | 5'-3' exonuclease | phrog_412 | exonuclease VIII | DNA, RNA and nucleotide metabolism | 1 | 52476 | 53315 |
| YP_004421529.1 | NC_015463_p75 | small terminase subunit | phrog_6299 | terminase small subunit | head and packaging | 1 | 54491 | 55117 |
| YP_004421542.1 | NC_015463_p88 | dCTP deaminase | phrog_1663 | dCTP deaminase | DNA, RNA and nucleotide metabolism | 1 | 65816 | 66325 |
| YP_004421510.1 | NC_015463_p56 | DNA helicase | phrog_19 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | -1 | 43418 | 45139 |
| YP_004421458.1 | NC_015463_p4 | hypothetical protein | singleton | unknown function | unknown function | -1 | 2320 | 2493 |
| YP_004421528.1 | NC_015463_p74 | hypothetical protein | singleton | unknown function | unknown function | 1 | 54180 | 54482 |
| YP_004421493.1 | NC_015463_p39 | hypothetical protein | phrog_507 | unknown function | unknown function | 1 | 31925 | 32269 |
| YP_004421531.1 | NC_015463_p77 | RNA polymerase sigma factor SigF | phrog_36098 | RNA polymerase sigma factor | transcription regulation | 1 | 56832 | 57452 |
| YP_004421469.1 | NC_015463_p15 | hypothetical protein | singleton | unknown function | unknown function | 1 | 9251 | 9796 |
| YP_004421533.1 | NC_015463_p79 | hypothetical protein | phrog_284 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 59193 | 60428 |
| YP_004421516.1 | NC_015463_p62 | single strand DNA-binding protein | phrog_44 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 48622 | 48972 |
| YP_004421461.1 | NC_015463_p7 | hypothetical protein | phrog_25460 | unknown function | unknown function | -1 | 4568 | 4984 |
| YP_004421487.1 | NC_015463_p33 | tail fiber | phrog_24898 | tail fiber protein | tail | 1 | 27178 | 28251 |
| YP_004421470.1 | NC_015463_p16 | hypothetical protein | phrog_34388 | unknown function | unknown function | 1 | 9910 | 10413 |
| YP_004421473.1 | NC_015463_p19 | unknown structural protein | phrog_38654 | tail protein | tail | 1 | 11482 | 12096 |
| YP_004421527.1 | NC_015463_p73 | thymidilate synthase | phrog_85 | thymidylate synthase | DNA, RNA and nucleotide metabolism | 1 | 53494 | 54180 |
| YP_004421507.1 | NC_015463_p53 | PE_PGRS family protein | phrog_4474 | unknown function | unknown function | 1 | 39916 | 41328 |
| YP_004421537.1 | NC_015463_p83 | hypothetical protein | singleton | unknown function | unknown function | 1 | 61960 | 62217 |
| YP_004421544.1 | NC_015463_p90 | hypothetical protein | singleton | unknown function | unknown function | 1 | 68070 | 68285 |
| YP_004421460.1 | NC_015463_p6 | hypothetical protein | singleton | unknown function | unknown function | -1 | 3513 | 4442 |
| YP_004421509.1 | NC_015463_p55 | hypothetical protein | singleton | unknown function | unknown function | -1 | 42991 | 43437 |
| YP_004421467.1 | NC_015463_p13 | unknown structural protein | singleton | unknown function | unknown function | 1 | 8182 | 8685 |
| YP_004421468.1 | NC_015463_p14 | unknown structural protein | phrog_26 | tail completion or Neck1 protein | connector | 1 | 8682 | 9227 |
| YP_004421456.1 | NC_015463_p2 | hypothetical protein | singleton | unknown function | unknown function | 1 | 816 | 1193 |
| YP_004421536.1 | NC_015463_p82 | structural protein | singleton | unknown function | unknown function | 1 | 61200 | 61802 |
| YP_004421474.1 | NC_015463_p20 | structural protein | singleton | unknown function | unknown function | 1 | 12118 | 12354 |
| YP_004421511.1 | NC_015463_p57 | hypothetical protein | singleton | unknown function | unknown function | -1 | 45136 | 46215 |
| YP_004421556.1 | NC_015463_p102 | hemagglutinin-neuraminidase domain-like protein | phrog_9052 | hemagglutinin | other | 1 | 71633 | 72130 |
| YP_004421530.1 | NC_015463_p76 | large terminase subunit | phrog_38 | terminase large subunit | head and packaging | 1 | 55119 | 56642 |
| YP_004421503.1 | NC_015463_p49 | hypothetical protein | singleton | unknown function | unknown function | -1 | 35945 | 36124 |
| YP_004421549.1 | NC_015463_p95 | hypothetical protein | singleton | unknown function | unknown function | 1 | 69644 | 69922 |
| YP_004421548.1 | NC_015463_p94 | hypothetical protein | singleton | unknown function | unknown function | -1 | 69129 | 69596 |
| YP_004421515.1 | NC_015463_p61 | RNA polymerase sigma factor | phrog_351 | RNA polymerase sigma factor | transcription regulation | 1 | 47804 | 48589 |
| YP_004421520.1 | NC_015463_p66 | hypothetical protein | singleton | unknown function | unknown function | 1 | 50173 | 50376 |
| YP_004421546.1 | NC_015463_p92 | hypothetical protein | singleton | unknown function | unknown function | 1 | 68417 | 68767 |
| YP_004421478.1 | NC_015463_p24 | unknown structural protein | singleton | unknown function | unknown function | 1 | 16182 | 18452 |
| YP_004421492.1 | NC_015463_p38 | major capsid protein | phrog_212 | major head protein | head and packaging | 1 | 30964 | 31866 |
| YP_004421517.1 | NC_015463_p63 | endonuclease | phrog_2633 | endonuclease VII | DNA, RNA and nucleotide metabolism | 1 | 49013 | 49420 |
| YP_004421550.1 | NC_015463_p96 | Rnf-Nqr | phrog_1679 | unknown function | unknown function | 1 | 69898 | 70131 |
| YP_004421513.1 | NC_015463_p59 | hypothetical protein | singleton | unknown function | unknown function | 1 | 46711 | 46932 |
| YP_004421553.1 | NC_015463_p99 | hypothetical protein | phrog_545 | unknown function | unknown function | 1 | 70874 | 71050 |
| YP_004421477.1 | NC_015463_p23 | unknown structural protein | singleton | unknown function | unknown function | 1 | 15824 | 16180 |