Genomic map of Synechococcus phage S-CBS2 (NC_015463)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_015463
Definition
Synechococcus phage S-CBS2, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae.
DB of origin
REFSEQ
Length
72332
Host Name
Synechococcus sp.
Host domain
Bacteria
Is prophage?
undef
Number of proteins
102
%GC
54.47
Number of singletons
55
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_004421483.1 NC_015463_p29 hypothetical protein singleton unknown function unknown function 1 20039 21541
YP_004421498.1 NC_015463_p44 hypothetical protein phrog_12220 unknown function unknown function 1 33607 33918
YP_004421491.1 NC_015463_p37 hypothetical protein phrog_953 HNH endonuclease DNA, RNA and nucleotide metabolism 1 30293 30769
YP_004421506.1 NC_015463_p52 triple helix repeat-containing collagen singleton unknown function unknown function 1 38798 39916
YP_004421551.1 NC_015463_p97 hypothetical protein singleton unknown function unknown function 1 70252 70518
YP_004421547.1 NC_015463_p93 hypothetical protein singleton unknown function unknown function 1 68764 68910
YP_004421488.1 NC_015463_p34 RNA polymerase-like protein singleton unknown function unknown function 1 28283 28702
YP_004421504.1 NC_015463_p50 unknown structural protein singleton unknown function unknown function 1 36178 37566
YP_004421505.1 NC_015463_p51 head decoration protein singleton unknown function unknown function 1 37607 38731
YP_004421525.1 NC_015463_p71 endodeoxyribonuclease RusA phrog_140 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 52103 52474
YP_004421464.1 NC_015463_p10 hypothetical protein singleton unknown function unknown function 1 6879 7151
YP_004421512.1 NC_015463_p58 hypothetical protein singleton unknown function unknown function 1 46373 46714
YP_004421482.1 NC_015463_p28 hypothetical protein singleton unknown function unknown function 1 19694 20008
YP_004421545.1 NC_015463_p91 hypothetical protein singleton unknown function unknown function 1 68289 68420
YP_004421472.1 NC_015463_p18 unknown structural protein singleton unknown function unknown function 1 10983 11420
YP_004421501.1 NC_015463_p47 hypothetical protein phrog_374 HNH endonuclease DNA, RNA and nucleotide metabolism 1 34705 35154
YP_004421495.1 NC_015463_p41 hypothetical protein singleton unknown function unknown function 1 32550 32918
YP_004421457.1 NC_015463_p3 hypothetical protein phrog_704 DNA repair exonuclease DNA, RNA and nucleotide metabolism 1 1190 2323
YP_004421508.1 NC_015463_p54 lysozyme phrog_7 endolysin lysis 1 41524 42675
YP_004421535.1 NC_015463_p81 hypothetical protein singleton unknown function unknown function 1 60989 61165
YP_004421455.1 NC_015463_p1 hypothetical protein singleton unknown function unknown function 1 425 793
YP_004421540.1 NC_015463_p86 peptidase singleton unknown function unknown function 1 62953 63258
YP_004421496.1 NC_015463_p42 hypothetical protein phrog_3281 endonuclease VII DNA, RNA and nucleotide metabolism 1 32976 33323
YP_004421500.1 NC_015463_p46 hypothetical protein phrog_7595 unknown function unknown function 1 34369 34659
YP_004421541.1 NC_015463_p87 class II ribonucleotide reductase phrog_367 ribonucleotide reductase DNA, RNA and nucleotide metabolism 1 63346 65646
YP_004421490.1 NC_015463_p36 host specific protein J phrog_206 head scaffolding protein head and packaging 1 29477 30208
YP_004421539.1 NC_015463_p85 hypothetical protein singleton unknown function unknown function 1 62447 62599
YP_004421502.1 NC_015463_p48 hypothetical protein singleton unknown function unknown function -1 35634 35945
YP_004421489.1 NC_015463_p35 hypothetical protein singleton unknown function unknown function 1 28704 29429
YP_004421519.1 NC_015463_p65 hypothetical protein phrog_32006 unknown function unknown function 1 49875 50180
YP_004421524.1 NC_015463_p70 DprA superfamily protein phrog_23875 DprA-like DNA recombination-mediator protein DNA, RNA and nucleotide metabolism 1 51457 52002
YP_004421479.1 NC_015463_p25 unknown structural protein singleton unknown function unknown function 1 18485 19213
YP_004421552.1 NC_015463_p98 hypothetical protein singleton unknown function unknown function 1 70550 70765
YP_004421518.1 NC_015463_p64 hypothetical protein phrog_34992 unknown function unknown function 1 49417 49866
YP_004421532.1 NC_015463_p78 DNA primase phrog_6444 DNA primase DNA, RNA and nucleotide metabolism 1 57584 59188
YP_004421463.1 NC_015463_p9 hypothetical protein singleton unknown function unknown function 1 5944 6876
YP_004421466.1 NC_015463_p12 hypothetical protein singleton unknown function unknown function 1 7858 8103
YP_004421486.1 NC_015463_p32 structural protein singleton unknown function unknown function 1 25127 27178
YP_004421485.1 NC_015463_p31 structural protein phrog_9627 unknown function unknown function 1 23009 25093
YP_004421554.1 NC_015463_p100 hypothetical protein singleton unknown function unknown function -1 71097 71402
YP_004421522.1 NC_015463_p68 hypothetical protein singleton unknown function unknown function 1 50589 50852
YP_004421514.1 NC_015463_p60 hypothetical protein phrog_21418 unknown function unknown function 1 46970 47674
YP_004421543.1 NC_015463_p89 hypothetical protein phrog_145 portal protein head and packaging 1 66329 68002
YP_004421465.1 NC_015463_p11 hypothetical protein singleton unknown function unknown function 1 7417 7821
YP_004421484.1 NC_015463_p30 structural protein singleton unknown function unknown function 1 21569 22981
YP_004421462.1 NC_015463_p8 excinuclease ABC subunit phrog_24743 unknown function unknown function -1 5381 5743
YP_004421555.1 NC_015463_p101 hypothetical protein singleton unknown function unknown function 1 71426 71602
YP_004421523.1 NC_015463_p69 hypothetical protein phrog_236 nucleotide kinase other 1 50849 51460
YP_004421459.1 NC_015463_p5 DNA methylase phrog_116 DNA methyltransferase other -1 2566 3426
YP_004421538.1 NC_015463_p84 hypothetical protein singleton unknown function unknown function 1 62214 62450
YP_004421471.1 NC_015463_p17 HNH endonuclease phrog_2214 HNH endonuclease DNA, RNA and nucleotide metabolism -1 10394 10858
YP_004421534.1 NC_015463_p80 hypothetical protein phrog_18407 unknown function unknown function 1 60428 60910
YP_004421475.1 NC_015463_p21 tail tape measure protein singleton unknown function unknown function 1 12450 15320
YP_004421480.1 NC_015463_p26 hypothetical protein singleton unknown function unknown function 1 19216 19479
YP_004421476.1 NC_015463_p22 hypothetical protein singleton unknown function unknown function 1 15317 15760
YP_004421497.1 NC_015463_p43 hypothetical protein singleton unknown function unknown function 1 33383 33556
YP_004421499.1 NC_015463_p45 hypothetical protein phrog_6437 unknown function unknown function 1 33911 34225
YP_004421521.1 NC_015463_p67 hypothetical protein phrog_31413 unknown function unknown function 1 50369 50596
YP_004421481.1 NC_015463_p27 hypothetical protein singleton unknown function unknown function 1 19482 19694
YP_004421494.1 NC_015463_p40 high light inducible protein phrog_178 high light inducible protein other 1 32303 32437
YP_004421526.1 NC_015463_p72 5'-3' exonuclease phrog_412 exonuclease VIII DNA, RNA and nucleotide metabolism 1 52476 53315
YP_004421529.1 NC_015463_p75 small terminase subunit phrog_6299 terminase small subunit head and packaging 1 54491 55117
YP_004421542.1 NC_015463_p88 dCTP deaminase phrog_1663 dCTP deaminase DNA, RNA and nucleotide metabolism 1 65816 66325
YP_004421510.1 NC_015463_p56 DNA helicase phrog_19 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism -1 43418 45139
YP_004421458.1 NC_015463_p4 hypothetical protein singleton unknown function unknown function -1 2320 2493
YP_004421528.1 NC_015463_p74 hypothetical protein singleton unknown function unknown function 1 54180 54482
YP_004421493.1 NC_015463_p39 hypothetical protein phrog_507 unknown function unknown function 1 31925 32269
YP_004421531.1 NC_015463_p77 RNA polymerase sigma factor SigF phrog_36098 RNA polymerase sigma factor transcription regulation 1 56832 57452
YP_004421469.1 NC_015463_p15 hypothetical protein singleton unknown function unknown function 1 9251 9796
YP_004421533.1 NC_015463_p79 hypothetical protein phrog_284 exonuclease DNA, RNA and nucleotide metabolism 1 59193 60428
YP_004421516.1 NC_015463_p62 single strand DNA-binding protein phrog_44 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 48622 48972
YP_004421461.1 NC_015463_p7 hypothetical protein phrog_25460 unknown function unknown function -1 4568 4984
YP_004421487.1 NC_015463_p33 tail fiber phrog_24898 tail fiber protein tail 1 27178 28251
YP_004421470.1 NC_015463_p16 hypothetical protein phrog_34388 unknown function unknown function 1 9910 10413
YP_004421473.1 NC_015463_p19 unknown structural protein phrog_38654 tail protein tail 1 11482 12096
YP_004421527.1 NC_015463_p73 thymidilate synthase phrog_85 thymidylate synthase DNA, RNA and nucleotide metabolism 1 53494 54180
YP_004421507.1 NC_015463_p53 PE_PGRS family protein phrog_4474 unknown function unknown function 1 39916 41328
YP_004421537.1 NC_015463_p83 hypothetical protein singleton unknown function unknown function 1 61960 62217
YP_004421544.1 NC_015463_p90 hypothetical protein singleton unknown function unknown function 1 68070 68285
YP_004421460.1 NC_015463_p6 hypothetical protein singleton unknown function unknown function -1 3513 4442
YP_004421509.1 NC_015463_p55 hypothetical protein singleton unknown function unknown function -1 42991 43437
YP_004421467.1 NC_015463_p13 unknown structural protein singleton unknown function unknown function 1 8182 8685
YP_004421468.1 NC_015463_p14 unknown structural protein phrog_26 tail completion or Neck1 protein connector 1 8682 9227
YP_004421456.1 NC_015463_p2 hypothetical protein singleton unknown function unknown function 1 816 1193
YP_004421536.1 NC_015463_p82 structural protein singleton unknown function unknown function 1 61200 61802
YP_004421474.1 NC_015463_p20 structural protein singleton unknown function unknown function 1 12118 12354
YP_004421511.1 NC_015463_p57 hypothetical protein singleton unknown function unknown function -1 45136 46215
YP_004421556.1 NC_015463_p102 hemagglutinin-neuraminidase domain-like protein phrog_9052 hemagglutinin other 1 71633 72130
YP_004421530.1 NC_015463_p76 large terminase subunit phrog_38 terminase large subunit head and packaging 1 55119 56642
YP_004421503.1 NC_015463_p49 hypothetical protein singleton unknown function unknown function -1 35945 36124
YP_004421549.1 NC_015463_p95 hypothetical protein singleton unknown function unknown function 1 69644 69922
YP_004421548.1 NC_015463_p94 hypothetical protein singleton unknown function unknown function -1 69129 69596
YP_004421515.1 NC_015463_p61 RNA polymerase sigma factor phrog_351 RNA polymerase sigma factor transcription regulation 1 47804 48589
YP_004421520.1 NC_015463_p66 hypothetical protein singleton unknown function unknown function 1 50173 50376
YP_004421546.1 NC_015463_p92 hypothetical protein singleton unknown function unknown function 1 68417 68767
YP_004421478.1 NC_015463_p24 unknown structural protein singleton unknown function unknown function 1 16182 18452
YP_004421492.1 NC_015463_p38 major capsid protein phrog_212 major head protein head and packaging 1 30964 31866
YP_004421517.1 NC_015463_p63 endonuclease phrog_2633 endonuclease VII DNA, RNA and nucleotide metabolism 1 49013 49420
YP_004421550.1 NC_015463_p96 Rnf-Nqr phrog_1679 unknown function unknown function 1 69898 70131
YP_004421513.1 NC_015463_p59 hypothetical protein singleton unknown function unknown function 1 46711 46932
YP_004421553.1 NC_015463_p99 hypothetical protein phrog_545 unknown function unknown function 1 70874 71050
YP_004421477.1 NC_015463_p23 unknown structural protein singleton unknown function unknown function 1 15824 16180