| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_015465 |
Definition |
Synechococcus phage S-CBS3, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae. |
DB of origin |
REFSEQ |
Length |
33004 |
Host Name |
Synechococcus sp. |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
46 |
%GC |
60.71 |
Number of singletons |
14 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_004421733.1 | NC_015465_p11 | hypothetical protein | phrog_290 | minor tail protein | tail | 1 | 11040 | 11972 |
| YP_004421752.1 | NC_015465_p30 | hypothetical protein | phrog_22131 | unknown function | unknown function | -1 | 22801 | 22974 |
| YP_004421739.1 | NC_015465_p17 | hypothetical protein | phrog_15525 | minor tail protein | tail | 1 | 17265 | 17633 |
| YP_004421749.1 | NC_015465_p27 | hypothetical protein | singleton | unknown function | unknown function | -1 | 21447 | 21710 |
| YP_004421747.1 | NC_015465_p25 | hypothetical protein | singleton | unknown function | unknown function | -1 | 20897 | 21076 |
| YP_004421754.1 | NC_015465_p32 | hypothetical protein | singleton | unknown function | unknown function | -1 | 23375 | 23569 |
| YP_004421768.1 | NC_015465_p46 | hypothetical protein | phrog_1924 | minor tail protein | tail | 1 | 32014 | 32682 |
| YP_004421748.1 | NC_015465_p26 | hypothetical protein | phrog_37139 | unknown function | unknown function | -1 | 21124 | 21450 |
| YP_004421732.1 | NC_015465_p10 | hypothetical protein | phrog_4204 | tail terminator | connector | 1 | 10420 | 10842 |
| YP_004421726.1 | NC_015465_p4 | major capsid protein | phrog_617 | major head protein | head and packaging | 1 | 4444 | 6954 |
| YP_004421729.1 | NC_015465_p7 | hypothetical protein | phrog_30757 | unknown function | unknown function | 1 | 9139 | 9390 |
| YP_004421737.1 | NC_015465_p15 | hypothetical protein | phrog_25799 | unknown function | unknown function | 1 | 14447 | 14911 |
| YP_004421731.1 | NC_015465_p9 | fiber protein | phrog_24754 | tail fiber protein | tail | 1 | 9812 | 10420 |
| YP_004421758.1 | NC_015465_p36 | hypothetical protein | singleton | unknown function | unknown function | 1 | 25484 | 25606 |
| YP_004421762.1 | NC_015465_p40 | DNA methylase | phrog_16 | DNA helicase | DNA, RNA and nucleotide metabolism | -1 | 26317 | 28581 |
| YP_004421761.1 | NC_015465_p39 | hypothetical protein | singleton | unknown function | unknown function | -1 | 26146 | 26313 |
| YP_004421763.1 | NC_015465_p41 | hypothetical protein | singleton | unknown function | unknown function | -1 | 28582 | 28773 |
| YP_004421746.1 | NC_015465_p24 | endonuclease | phrog_2214 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 20605 | 20904 |
| YP_004421760.1 | NC_015465_p38 | hypothetical protein | singleton | unknown function | unknown function | -1 | 25863 | 26129 |
| YP_004421730.1 | NC_015465_p8 | hypothetical protein | phrog_24448 | unknown function | unknown function | 1 | 9390 | 9815 |
| YP_004421735.1 | NC_015465_p13 | hypothetical protein | phrog_680 | tail length tape measure protein | tail | 1 | 12436 | 12687 |
| YP_004421753.1 | NC_015465_p31 | single-strand binding protein | phrog_44 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 23027 | 23371 |
| YP_004421745.1 | NC_015465_p23 | lysozyme | phrog_28234 | endolysin | lysis | 1 | 19324 | 20403 |
| YP_004421759.1 | NC_015465_p37 | hypothetical protein | singleton | unknown function | unknown function | -1 | 25623 | 25823 |
| YP_004421740.1 | NC_015465_p18 | hypothetical protein | phrog_15525 | minor tail protein | tail | 1 | 17630 | 18154 |
| YP_004421738.1 | NC_015465_p16 | hypothetical protein | phrog_27845 | tail protein | tail | 1 | 14908 | 17262 |
| YP_004421756.1 | NC_015465_p34 | endodeoxyribonuclease | phrog_140 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | -1 | 24486 | 24926 |
| YP_004421744.1 | NC_015465_p22 | hypothetical protein | singleton | unknown function | unknown function | 1 | 19160 | 19327 |
| YP_004421728.1 | NC_015465_p6 | major tropism determinant | phrog_11262 | tail protein | tail | 1 | 7835 | 8995 |
| YP_004421743.1 | NC_015465_p21 | hypothetical protein | phrog_22542 | unknown function | unknown function | 1 | 18975 | 19115 |
| YP_004421766.1 | NC_015465_p44 | hypothetical protein | singleton | unknown function | unknown function | 1 | 29867 | 30025 |
| YP_004421727.1 | NC_015465_p5 | hypothetical protein | phrog_5707 | unknown function | unknown function | 1 | 7168 | 7545 |
| YP_004421723.1 | NC_015465_p1 | large terminase subunit | phrog_15 | terminase large subunit | head and packaging | 1 | 454 | 2337 |
| YP_004421725.1 | NC_015465_p3 | lambda-like phage portal protein | phrog_21 | portal protein | head and packaging | 1 | 2939 | 4444 |
| YP_004421767.1 | NC_015465_p45 | hexameric replicative helicase RepA | phrog_30286 | unknown function | unknown function | 1 | 30277 | 31932 |
| YP_004421757.1 | NC_015465_p35 | hypothetical protein | singleton | unknown function | unknown function | -1 | 24923 | 25351 |
| YP_004421741.1 | NC_015465_p19 | fiber protein | phrog_31660 | tail fiber protein | tail | 1 | 18151 | 18699 |
| YP_004421742.1 | NC_015465_p20 | hypothetical protein | phrog_26178 | unknown function | unknown function | 1 | 18728 | 18970 |
| YP_004421751.1 | NC_015465_p29 | group 2 RNA polymerase sigma factor | phrog_351 | RNA polymerase sigma factor | transcription regulation | -1 | 21858 | 22757 |
| YP_004421750.1 | NC_015465_p28 | hypothetical protein | singleton | unknown function | unknown function | -1 | 21707 | 21868 |
| YP_004421755.1 | NC_015465_p33 | hypothetical protein | singleton | unknown function | unknown function | -1 | 23756 | 24493 |
| YP_004421734.1 | NC_015465_p12 | hypothetical protein | phrog_569 | tail length tape measure protein | tail | 1 | 11978 | 12355 |
| YP_004421764.1 | NC_015465_p42 | hypothetical protein | singleton | unknown function | unknown function | -1 | 28940 | 29116 |
| YP_004421736.1 | NC_015465_p14 | tail tape measure protein | phrog_3981 | tail length tape measure protein | tail | 1 | 12687 | 14447 |
| YP_004421765.1 | NC_015465_p43 | hypothetical protein | phrog_298 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 29116 | 29868 |
| YP_004421724.1 | NC_015465_p2 | phage-related protein | phrog_5774 | head-tail joining | connector | 1 | 2367 | 2939 |