Genomic map of Synechococcus phage S-CBS3 (NC_015465)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_015465
Definition
Synechococcus phage S-CBS3, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae.
DB of origin
REFSEQ
Length
33004
Host Name
Synechococcus sp.
Host domain
Bacteria
Is prophage?
undef
Number of proteins
46
%GC
60.71
Number of singletons
14
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_004421733.1 NC_015465_p11 hypothetical protein phrog_290 minor tail protein tail 1 11040 11972
YP_004421752.1 NC_015465_p30 hypothetical protein phrog_22131 unknown function unknown function -1 22801 22974
YP_004421739.1 NC_015465_p17 hypothetical protein phrog_15525 minor tail protein tail 1 17265 17633
YP_004421749.1 NC_015465_p27 hypothetical protein singleton unknown function unknown function -1 21447 21710
YP_004421747.1 NC_015465_p25 hypothetical protein singleton unknown function unknown function -1 20897 21076
YP_004421754.1 NC_015465_p32 hypothetical protein singleton unknown function unknown function -1 23375 23569
YP_004421768.1 NC_015465_p46 hypothetical protein phrog_1924 minor tail protein tail 1 32014 32682
YP_004421748.1 NC_015465_p26 hypothetical protein phrog_37139 unknown function unknown function -1 21124 21450
YP_004421732.1 NC_015465_p10 hypothetical protein phrog_4204 tail terminator connector 1 10420 10842
YP_004421726.1 NC_015465_p4 major capsid protein phrog_617 major head protein head and packaging 1 4444 6954
YP_004421729.1 NC_015465_p7 hypothetical protein phrog_30757 unknown function unknown function 1 9139 9390
YP_004421737.1 NC_015465_p15 hypothetical protein phrog_25799 unknown function unknown function 1 14447 14911
YP_004421731.1 NC_015465_p9 fiber protein phrog_24754 tail fiber protein tail 1 9812 10420
YP_004421758.1 NC_015465_p36 hypothetical protein singleton unknown function unknown function 1 25484 25606
YP_004421762.1 NC_015465_p40 DNA methylase phrog_16 DNA helicase DNA, RNA and nucleotide metabolism -1 26317 28581
YP_004421761.1 NC_015465_p39 hypothetical protein singleton unknown function unknown function -1 26146 26313
YP_004421763.1 NC_015465_p41 hypothetical protein singleton unknown function unknown function -1 28582 28773
YP_004421746.1 NC_015465_p24 endonuclease phrog_2214 HNH endonuclease DNA, RNA and nucleotide metabolism 1 20605 20904
YP_004421760.1 NC_015465_p38 hypothetical protein singleton unknown function unknown function -1 25863 26129
YP_004421730.1 NC_015465_p8 hypothetical protein phrog_24448 unknown function unknown function 1 9390 9815
YP_004421735.1 NC_015465_p13 hypothetical protein phrog_680 tail length tape measure protein tail 1 12436 12687
YP_004421753.1 NC_015465_p31 single-strand binding protein phrog_44 single strand DNA binding protein DNA, RNA and nucleotide metabolism -1 23027 23371
YP_004421745.1 NC_015465_p23 lysozyme phrog_28234 endolysin lysis 1 19324 20403
YP_004421759.1 NC_015465_p37 hypothetical protein singleton unknown function unknown function -1 25623 25823
YP_004421740.1 NC_015465_p18 hypothetical protein phrog_15525 minor tail protein tail 1 17630 18154
YP_004421738.1 NC_015465_p16 hypothetical protein phrog_27845 tail protein tail 1 14908 17262
YP_004421756.1 NC_015465_p34 endodeoxyribonuclease phrog_140 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism -1 24486 24926
YP_004421744.1 NC_015465_p22 hypothetical protein singleton unknown function unknown function 1 19160 19327
YP_004421728.1 NC_015465_p6 major tropism determinant phrog_11262 tail protein tail 1 7835 8995
YP_004421743.1 NC_015465_p21 hypothetical protein phrog_22542 unknown function unknown function 1 18975 19115
YP_004421766.1 NC_015465_p44 hypothetical protein singleton unknown function unknown function 1 29867 30025
YP_004421727.1 NC_015465_p5 hypothetical protein phrog_5707 unknown function unknown function 1 7168 7545
YP_004421723.1 NC_015465_p1 large terminase subunit phrog_15 terminase large subunit head and packaging 1 454 2337
YP_004421725.1 NC_015465_p3 lambda-like phage portal protein phrog_21 portal protein head and packaging 1 2939 4444
YP_004421767.1 NC_015465_p45 hexameric replicative helicase RepA phrog_30286 unknown function unknown function 1 30277 31932
YP_004421757.1 NC_015465_p35 hypothetical protein singleton unknown function unknown function -1 24923 25351
YP_004421741.1 NC_015465_p19 fiber protein phrog_31660 tail fiber protein tail 1 18151 18699
YP_004421742.1 NC_015465_p20 hypothetical protein phrog_26178 unknown function unknown function 1 18728 18970
YP_004421751.1 NC_015465_p29 group 2 RNA polymerase sigma factor phrog_351 RNA polymerase sigma factor transcription regulation -1 21858 22757
YP_004421750.1 NC_015465_p28 hypothetical protein singleton unknown function unknown function -1 21707 21868
YP_004421755.1 NC_015465_p33 hypothetical protein singleton unknown function unknown function -1 23756 24493
YP_004421734.1 NC_015465_p12 hypothetical protein phrog_569 tail length tape measure protein tail 1 11978 12355
YP_004421764.1 NC_015465_p42 hypothetical protein singleton unknown function unknown function -1 28940 29116
YP_004421736.1 NC_015465_p14 tail tape measure protein phrog_3981 tail length tape measure protein tail 1 12687 14447
YP_004421765.1 NC_015465_p43 hypothetical protein phrog_298 exonuclease DNA, RNA and nucleotide metabolism -1 29116 29868
YP_004421724.1 NC_015465_p2 phage-related protein phrog_5774 head-tail joining connector 1 2367 2939