| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_015466 |
Definition |
Roseobacter phage RDJL Phi 1, complete genome. |
Molecule type |
DNA |
Genome structure |
circular |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Xiamenvirus. |
DB of origin |
REFSEQ |
Length |
62668 |
Host Name |
Roseobacter denitrificans |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
87 |
%GC |
57.88 |
Number of singletons |
13 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_004421776.1 | NC_015466_p8 | hypothetical protein RDJLphi1_gp08 | phrog_29108 | unknown function | unknown function | -1 | 4853 | 5140 |
| YP_004421821.1 | NC_015466_p53 | hypothetical protein RDJLphi1_gp53 | singleton | unknown function | unknown function | 1 | 32809 | 33309 |
| YP_004421799.1 | NC_015466_p31 | hypothetical protein RDJLphi1_gp31 | phrog_25396 | unknown function | unknown function | -1 | 18371 | 18676 |
| YP_004421826.1 | NC_015466_p58 | hypothetical protein RDJLphi1_gp58 | singleton | unknown function | unknown function | 1 | 35840 | 36022 |
| YP_004421849.1 | NC_015466_p81 | glycoside hydrolase | phrog_2913 | glycoside hydrolase | other | 1 | 55031 | 55651 |
| YP_004421845.1 | NC_015466_p77 | phage structural protein | phrog_179 | tail terminator | connector | 1 | 49089 | 49505 |
| YP_004421815.1 | NC_015466_p47 | integrase | phrog_1156 | DNA primase | DNA, RNA and nucleotide metabolism | 1 | 27764 | 30172 |
| YP_004421818.1 | NC_015466_p50 | hypothetical protein RDJLphi1_gp50 | phrog_2072 | unknown function | unknown function | 1 | 30840 | 31205 |
| YP_004421819.1 | NC_015466_p51 | hypothetical protein RDJLphi1_gp51 | phrog_31323 | unknown function | unknown function | 1 | 31198 | 31581 |
| YP_004421847.1 | NC_015466_p79 | hypothetical protein RDJLphi1_gp79 | phrog_313 | Tail assembly chaperone | tail | 1 | 51129 | 51575 |
| YP_004421828.1 | NC_015466_p60 | hypothetical protein RDJLphi1_gp60 | singleton | unknown function | unknown function | 1 | 36407 | 36904 |
| YP_004421843.1 | NC_015466_p75 | hypothetical protein RDJLphi1_gp75 | phrog_32158 | unknown function | unknown function | 1 | 48014 | 48679 |
| YP_004421811.1 | NC_015466_p43 | hypothetical protein RDJLphi1_gp43 | phrog_3848 | unknown function | unknown function | -1 | 26009 | 26269 |
| YP_004421783.1 | NC_015466_p15 | dihydrofolate reductase | phrog_13578 | dihydrofolate reductase | DNA, RNA and nucleotide metabolism | -1 | 7325 | 7840 |
| YP_004421816.1 | NC_015466_p48 | hypothetical protein RDJLphi1_gp48 | phrog_32511 | unknown function | unknown function | 1 | 30234 | 30452 |
| YP_004421800.1 | NC_015466_p32 | hypothetical protein RDJLphi1_gp32 | phrog_1250 | unknown function | unknown function | -1 | 18802 | 19833 |
| YP_004421802.1 | NC_015466_p34 | hypothetical protein RDJLphi1_gp34 | phrog_112 | Gp2.5-like ssDNA binding protein and ssDNA annealing protein | DNA, RNA and nucleotide metabolism | -1 | 20391 | 21032 |
| YP_004421836.1 | NC_015466_p68 | hypothetical protein RDJLphi1_gp68 | phrog_477 | head-tail adaptor Ad1 | connector | 1 | 42802 | 43398 |
| YP_004421827.1 | NC_015466_p59 | hypothetical protein RDJLphi1_gp59 | singleton | unknown function | unknown function | 1 | 36080 | 36388 |
| YP_004421793.1 | NC_015466_p25 | hypothetical protein RDJLphi1_gp25 | phrog_38356 | unknown function | unknown function | -1 | 13911 | 14294 |
| YP_004421791.1 | NC_015466_p23 | hydrolase of HD superfamily | phrog_6402 | deoxyribonucleoside 5' monophosphate phosphatase | other | -1 | 13305 | 13664 |
| YP_004421803.1 | NC_015466_p35 | exonuclease | phrog_255 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 21173 | 21700 |
| YP_004421805.1 | NC_015466_p37 | transcriptional regulator CtrA | phrog_31800 | transcriptional regulator | transcription regulation | -1 | 21915 | 22370 |
| YP_004421846.1 | NC_015466_p78 | major capsid protein | phrog_290 | minor tail protein | tail | 1 | 49523 | 51043 |
| YP_004421830.1 | NC_015466_p62 | hypothetical protein RDJLphi1_gp62 | phrog_4044 | terminase small subunit | head and packaging | 1 | 37752 | 38327 |
| YP_004421794.1 | NC_015466_p26 | hypothetical protein RDJLphi1_gp26 | phrog_6247 | DNA topoisomerase | DNA, RNA and nucleotide metabolism | -1 | 14364 | 14990 |
| YP_004421775.1 | NC_015466_p7 | ribonucleotide reductase | phrog_84 | ribonucleoside-diphosphate reductase large subunit | DNA, RNA and nucleotide metabolism | -1 | 3009 | 4769 |
| YP_004421853.1 | NC_015466_p85 | ribonuclease III | phrog_15388 | unknown function | unknown function | 1 | 61070 | 62152 |
| YP_004421804.1 | NC_015466_p36 | hypothetical protein RDJLphi1_gp36 | phrog_35341 | unknown function | unknown function | -1 | 21700 | 21921 |
| YP_004421790.1 | NC_015466_p22 | helicase | phrog_62 | DNA helicase | DNA, RNA and nucleotide metabolism | -1 | 11763 | 13301 |
| YP_004421814.1 | NC_015466_p46 | membrane spanning protein TolA | phrog_32389 | unknown function | unknown function | -1 | 27121 | 27597 |
| YP_004421770.1 | NC_015466_p2 | hypothetical protein RDJLphi1_gp02 | phrog_812 | Rz-like spanin | lysis | 1 | 413 | 688 |
| YP_004421851.1 | NC_015466_p83 | phage cell wall peptidase | phrog_329 | minor tail protein | tail | 1 | 56522 | 56971 |
| YP_004421810.1 | NC_015466_p42 | hypothetical protein RDJLphi1_gp42 | phrog_69 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 24566 | 26008 |
| YP_004421774.1 | NC_015466_p6 | hypothetical protein RDJLphi1_gp06 | singleton | unknown function | unknown function | 1 | 2625 | 2888 |
| YP_004421785.1 | NC_015466_p17 | thymidylate synthase | phrog_160 | thymidylate synthase | DNA, RNA and nucleotide metabolism | -1 | 8292 | 9179 |
| YP_004421837.1 | NC_015466_p69 | hypothetical protein RDJLphi1_gp69 | phrog_161 | head closure Hc1 | connector | 1 | 43411 | 43785 |
| YP_004421823.1 | NC_015466_p55 | hypothetical protein RDJLphi1_gp55 | phrog_3230 | unknown function | unknown function | 1 | 34046 | 34588 |
| YP_004421796.1 | NC_015466_p28 | DNA polymerase A domain protein | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 15350 | 17866 |
| YP_004421787.1 | NC_015466_p19 | hypothetical protein RDJLphi1_gp19 | phrog_11422 | unknown function | unknown function | -1 | 10314 | 11075 |
| YP_004421838.1 | NC_015466_p70 | head morphogenesis protein | phrog_3517 | head morphogenesis | head and packaging | 1 | 43786 | 44760 |
| YP_004421855.1 | NC_015466_p87 | hypothetical protein RDJLphi1_gp87 | singleton | unknown function | unknown function | 1 | 62448 | 62648 |
| YP_004421817.1 | NC_015466_p49 | hypothetical protein RDJLphi1_gp49 | phrog_34904 | unknown function | unknown function | 1 | 30592 | 30843 |
| YP_004421808.1 | NC_015466_p40 | hypothetical protein RDJLphi1_gp40 | phrog_33630 | unknown function | unknown function | -1 | 24034 | 24288 |
| YP_004421784.1 | NC_015466_p16 | deoxycytidylate deaminase | phrog_174 | dCMP deaminase | DNA, RNA and nucleotide metabolism | -1 | 7831 | 8295 |
| YP_004421773.1 | NC_015466_p5 | hypothetical protein RDJLphi1_gp05 | phrog_20762 | unknown function | unknown function | 1 | 1977 | 2330 |
| YP_004421824.1 | NC_015466_p56 | endonuclease V | phrog_1183 | endonuclease V N-glycosylase UV repair enzyme | DNA, RNA and nucleotide metabolism | 1 | 34895 | 35275 |
| YP_004421825.1 | NC_015466_p57 | hypothetical protein RDJLphi1_gp57 | singleton | unknown function | unknown function | 1 | 35586 | 35855 |
| YP_004421786.1 | NC_015466_p18 | Cof hydrolase | phrog_38514 | unknown function | unknown function | -1 | 9169 | 10215 |
| YP_004421807.1 | NC_015466_p39 | hypothetical protein RDJLphi1_gp39 | phrog_30993 | unknown function | unknown function | -1 | 23706 | 24041 |
| YP_004421850.1 | NC_015466_p82 | gene transfer agent | phrog_778 | tail assembly protein | tail | 1 | 55648 | 56553 |
| YP_004421779.1 | NC_015466_p11 | hypothetical protein RDJLphi1_gp11 | phrog_37268 | unknown function | unknown function | -1 | 5544 | 6194 |
| YP_004421854.1 | NC_015466_p86 | hypothetical protein RDJLphi1_gp86 | phrog_35163 | unknown function | unknown function | 1 | 62161 | 62400 |
| YP_004421780.1 | NC_015466_p12 | hypothetical protein RDJLphi1_gp12 | singleton | unknown function | unknown function | 1 | 6275 | 6610 |
| YP_004421839.1 | NC_015466_p71 | hypothetical protein RDJLphi1_gp71 | phrog_1530 | DNA methyltransferase | other | 1 | 44852 | 45250 |
| YP_004421833.1 | NC_015466_p65 | hypothetical protein RDJLphi1_gp65 | singleton | unknown function | unknown function | -1 | 40659 | 40952 |
| YP_004421788.1 | NC_015466_p20 | hypothetical protein RDJLphi1_gp20 | phrog_34628 | unknown function | unknown function | -1 | 11068 | 11268 |
| YP_004421834.1 | NC_015466_p66 | hypothetical protein RDJLphi1_gp66 | singleton | unknown function | unknown function | -1 | 40981 | 41193 |
| YP_004421778.1 | NC_015466_p10 | hypothetical protein RDJLphi1_gp10 | phrog_26036 | unknown function | unknown function | -1 | 5298 | 5534 |
| YP_004421806.1 | NC_015466_p38 | hypothetical protein RDJLphi1_gp38 | phrog_31864 | unknown function | unknown function | -1 | 22762 | 23694 |
| YP_004421801.1 | NC_015466_p33 | hypothetical protein RDJLphi1_gp33 | phrog_36992 | unknown function | unknown function | 1 | 20003 | 20305 |
| YP_004421820.1 | NC_015466_p52 | hypothetical protein RDJLphi1_gp52 | phrog_30970 | unknown function | unknown function | 1 | 31699 | 32037 |
| YP_004421844.1 | NC_015466_p76 | hypothetical protein RDJLphi1_gp76 | phrog_169 | tail completion or Neck1 protein | connector | 1 | 48682 | 49092 |
| YP_004421829.1 | NC_015466_p61 | hypothetical protein RDJLphi1_gp61 | phrog_17001 | endolysin | lysis | 1 | 36921 | 37580 |
| YP_004421840.1 | NC_015466_p72 | hypothetical protein RDJLphi1_gp72 | phrog_24785 | unknown function | unknown function | 1 | 45252 | 46364 |
| YP_004421782.1 | NC_015466_p14 | hypothetical protein RDJLphi1_gp14 | phrog_2165 | DNA helicase | DNA, RNA and nucleotide metabolism | -1 | 6886 | 7350 |
| YP_004421798.1 | NC_015466_p30 | hypothetical protein RDJLphi1_gp30 | phrog_38812 | unknown function | unknown function | -1 | 18123 | 18374 |
| YP_004421835.1 | NC_015466_p67 | hypothetical protein RDJLphi1_gp67 | phrog_113 | portal protein | head and packaging | 1 | 41363 | 42802 |
| YP_004421781.1 | NC_015466_p13 | hypothetical protein RDJLphi1_gp13 | phrog_34896 | unknown function | unknown function | 1 | 6610 | 6885 |
| YP_004421852.1 | NC_015466_p84 | gene transfer agent | phrog_4271 | tail protein | tail | 1 | 56975 | 61060 |
| YP_004421792.1 | NC_015466_p24 | phosphohydrolase | phrog_21461 | phosphohydrolase | other | -1 | 13654 | 13899 |
| YP_004421777.1 | NC_015466_p9 | hypothetical protein RDJLphi1_gp09 | singleton | unknown function | unknown function | -1 | 5137 | 5310 |
| YP_004421842.1 | NC_015466_p74 | capsid related protein | phrog_1005 | major head protein | head and packaging | 1 | 46906 | 47940 |
| YP_004421789.1 | NC_015466_p21 | hypothetical protein RDJLphi1_gp21 | phrog_38698 | unknown function | unknown function | -1 | 11362 | 11664 |
| YP_004421832.1 | NC_015466_p64 | hypothetical protein RDJLphi1_gp64 | singleton | unknown function | unknown function | -1 | 39979 | 40596 |
| YP_004421813.1 | NC_015466_p45 | hypothetical protein RDJLphi1_gp45 | phrog_38816 | unknown function | unknown function | -1 | 26471 | 26686 |
| YP_004421809.1 | NC_015466_p41 | hypothetical protein RDJLphi1_gp41 | phrog_32083 | unknown function | unknown function | -1 | 24288 | 24569 |
| YP_004421797.1 | NC_015466_p29 | hypothetical protein RDJLphi1_gp29 | phrog_2855 | unknown function | unknown function | -1 | 17870 | 18106 |
| YP_004421812.1 | NC_015466_p44 | hypothetical protein RDJLphi1_gp44 | phrog_30481 | unknown function | unknown function | -1 | 26269 | 26478 |
| YP_004421822.1 | NC_015466_p54 | hypothetical protein RDJLphi1_gp54 | phrog_28846 | unknown function | unknown function | 1 | 33491 | 33895 |
| YP_004421769.1 | NC_015466_p1 | hypothetical protein RDJLphi1_gp01 | phrog_739 | Rz-like spanin | lysis | 1 | 1 | 432 |
| YP_004421772.1 | NC_015466_p4 | hypothetical protein RDJLphi1_gp04 | phrog_704 | DNA repair exonuclease | DNA, RNA and nucleotide metabolism | 1 | 1058 | 1987 |
| YP_004421848.1 | NC_015466_p80 | tail tape measure protein | phrog_38390 | tail length tape measure protein | tail | 1 | 51941 | 55030 |
| YP_004421841.1 | NC_015466_p73 | hypothetical protein RDJLphi1_gp73 | phrog_673 | head scaffolding protein | head and packaging | 1 | 46442 | 46867 |
| YP_004421771.1 | NC_015466_p3 | hypothetical protein RDJLphi1_gp03 | phrog_6420 | unknown function | unknown function | 1 | 693 | 1013 |
| YP_004421831.1 | NC_015466_p63 | phage terminase large subunit | phrog_2 | terminase large subunit | head and packaging | 1 | 38331 | 39689 |
| YP_004421795.1 | NC_015466_p27 | hypothetical protein RDJLphi1_gp27 | singleton | unknown function | unknown function | 1 | 14993 | 15313 |