Genomic map of Roseobacter phage RDJL Phi 1 (NC_015466)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_015466
Definition
Roseobacter phage RDJL Phi 1, complete genome.
Molecule type
DNA
Genome structure
circular
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Xiamenvirus.
DB of origin
REFSEQ
Length
62668
Host Name
Roseobacter denitrificans
Host domain
Bacteria
Is prophage?
undef
Number of proteins
87
%GC
57.88
Number of singletons
13
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_004421776.1 NC_015466_p8 hypothetical protein RDJLphi1_gp08 phrog_29108 unknown function unknown function -1 4853 5140
YP_004421821.1 NC_015466_p53 hypothetical protein RDJLphi1_gp53 singleton unknown function unknown function 1 32809 33309
YP_004421799.1 NC_015466_p31 hypothetical protein RDJLphi1_gp31 phrog_25396 unknown function unknown function -1 18371 18676
YP_004421826.1 NC_015466_p58 hypothetical protein RDJLphi1_gp58 singleton unknown function unknown function 1 35840 36022
YP_004421849.1 NC_015466_p81 glycoside hydrolase phrog_2913 glycoside hydrolase other 1 55031 55651
YP_004421845.1 NC_015466_p77 phage structural protein phrog_179 tail terminator connector 1 49089 49505
YP_004421815.1 NC_015466_p47 integrase phrog_1156 DNA primase DNA, RNA and nucleotide metabolism 1 27764 30172
YP_004421818.1 NC_015466_p50 hypothetical protein RDJLphi1_gp50 phrog_2072 unknown function unknown function 1 30840 31205
YP_004421819.1 NC_015466_p51 hypothetical protein RDJLphi1_gp51 phrog_31323 unknown function unknown function 1 31198 31581
YP_004421847.1 NC_015466_p79 hypothetical protein RDJLphi1_gp79 phrog_313 Tail assembly chaperone tail 1 51129 51575
YP_004421828.1 NC_015466_p60 hypothetical protein RDJLphi1_gp60 singleton unknown function unknown function 1 36407 36904
YP_004421843.1 NC_015466_p75 hypothetical protein RDJLphi1_gp75 phrog_32158 unknown function unknown function 1 48014 48679
YP_004421811.1 NC_015466_p43 hypothetical protein RDJLphi1_gp43 phrog_3848 unknown function unknown function -1 26009 26269
YP_004421783.1 NC_015466_p15 dihydrofolate reductase phrog_13578 dihydrofolate reductase DNA, RNA and nucleotide metabolism -1 7325 7840
YP_004421816.1 NC_015466_p48 hypothetical protein RDJLphi1_gp48 phrog_32511 unknown function unknown function 1 30234 30452
YP_004421800.1 NC_015466_p32 hypothetical protein RDJLphi1_gp32 phrog_1250 unknown function unknown function -1 18802 19833
YP_004421802.1 NC_015466_p34 hypothetical protein RDJLphi1_gp34 phrog_112 Gp2.5-like ssDNA binding protein and ssDNA annealing protein DNA, RNA and nucleotide metabolism -1 20391 21032
YP_004421836.1 NC_015466_p68 hypothetical protein RDJLphi1_gp68 phrog_477 head-tail adaptor Ad1 connector 1 42802 43398
YP_004421827.1 NC_015466_p59 hypothetical protein RDJLphi1_gp59 singleton unknown function unknown function 1 36080 36388
YP_004421793.1 NC_015466_p25 hypothetical protein RDJLphi1_gp25 phrog_38356 unknown function unknown function -1 13911 14294
YP_004421791.1 NC_015466_p23 hydrolase of HD superfamily phrog_6402 deoxyribonucleoside 5' monophosphate phosphatase other -1 13305 13664
YP_004421803.1 NC_015466_p35 exonuclease phrog_255 exonuclease DNA, RNA and nucleotide metabolism -1 21173 21700
YP_004421805.1 NC_015466_p37 transcriptional regulator CtrA phrog_31800 transcriptional regulator transcription regulation -1 21915 22370
YP_004421846.1 NC_015466_p78 major capsid protein phrog_290 minor tail protein tail 1 49523 51043
YP_004421830.1 NC_015466_p62 hypothetical protein RDJLphi1_gp62 phrog_4044 terminase small subunit head and packaging 1 37752 38327
YP_004421794.1 NC_015466_p26 hypothetical protein RDJLphi1_gp26 phrog_6247 DNA topoisomerase DNA, RNA and nucleotide metabolism -1 14364 14990
YP_004421775.1 NC_015466_p7 ribonucleotide reductase phrog_84 ribonucleoside-diphosphate reductase large subunit DNA, RNA and nucleotide metabolism -1 3009 4769
YP_004421853.1 NC_015466_p85 ribonuclease III phrog_15388 unknown function unknown function 1 61070 62152
YP_004421804.1 NC_015466_p36 hypothetical protein RDJLphi1_gp36 phrog_35341 unknown function unknown function -1 21700 21921
YP_004421790.1 NC_015466_p22 helicase phrog_62 DNA helicase DNA, RNA and nucleotide metabolism -1 11763 13301
YP_004421814.1 NC_015466_p46 membrane spanning protein TolA phrog_32389 unknown function unknown function -1 27121 27597
YP_004421770.1 NC_015466_p2 hypothetical protein RDJLphi1_gp02 phrog_812 Rz-like spanin lysis 1 413 688
YP_004421851.1 NC_015466_p83 phage cell wall peptidase phrog_329 minor tail protein tail 1 56522 56971
YP_004421810.1 NC_015466_p42 hypothetical protein RDJLphi1_gp42 phrog_69 exonuclease DNA, RNA and nucleotide metabolism -1 24566 26008
YP_004421774.1 NC_015466_p6 hypothetical protein RDJLphi1_gp06 singleton unknown function unknown function 1 2625 2888
YP_004421785.1 NC_015466_p17 thymidylate synthase phrog_160 thymidylate synthase DNA, RNA and nucleotide metabolism -1 8292 9179
YP_004421837.1 NC_015466_p69 hypothetical protein RDJLphi1_gp69 phrog_161 head closure Hc1 connector 1 43411 43785
YP_004421823.1 NC_015466_p55 hypothetical protein RDJLphi1_gp55 phrog_3230 unknown function unknown function 1 34046 34588
YP_004421796.1 NC_015466_p28 DNA polymerase A domain protein phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism -1 15350 17866
YP_004421787.1 NC_015466_p19 hypothetical protein RDJLphi1_gp19 phrog_11422 unknown function unknown function -1 10314 11075
YP_004421838.1 NC_015466_p70 head morphogenesis protein phrog_3517 head morphogenesis head and packaging 1 43786 44760
YP_004421855.1 NC_015466_p87 hypothetical protein RDJLphi1_gp87 singleton unknown function unknown function 1 62448 62648
YP_004421817.1 NC_015466_p49 hypothetical protein RDJLphi1_gp49 phrog_34904 unknown function unknown function 1 30592 30843
YP_004421808.1 NC_015466_p40 hypothetical protein RDJLphi1_gp40 phrog_33630 unknown function unknown function -1 24034 24288
YP_004421784.1 NC_015466_p16 deoxycytidylate deaminase phrog_174 dCMP deaminase DNA, RNA and nucleotide metabolism -1 7831 8295
YP_004421773.1 NC_015466_p5 hypothetical protein RDJLphi1_gp05 phrog_20762 unknown function unknown function 1 1977 2330
YP_004421824.1 NC_015466_p56 endonuclease V phrog_1183 endonuclease V N-glycosylase UV repair enzyme DNA, RNA and nucleotide metabolism 1 34895 35275
YP_004421825.1 NC_015466_p57 hypothetical protein RDJLphi1_gp57 singleton unknown function unknown function 1 35586 35855
YP_004421786.1 NC_015466_p18 Cof hydrolase phrog_38514 unknown function unknown function -1 9169 10215
YP_004421807.1 NC_015466_p39 hypothetical protein RDJLphi1_gp39 phrog_30993 unknown function unknown function -1 23706 24041
YP_004421850.1 NC_015466_p82 gene transfer agent phrog_778 tail assembly protein tail 1 55648 56553
YP_004421779.1 NC_015466_p11 hypothetical protein RDJLphi1_gp11 phrog_37268 unknown function unknown function -1 5544 6194
YP_004421854.1 NC_015466_p86 hypothetical protein RDJLphi1_gp86 phrog_35163 unknown function unknown function 1 62161 62400
YP_004421780.1 NC_015466_p12 hypothetical protein RDJLphi1_gp12 singleton unknown function unknown function 1 6275 6610
YP_004421839.1 NC_015466_p71 hypothetical protein RDJLphi1_gp71 phrog_1530 DNA methyltransferase other 1 44852 45250
YP_004421833.1 NC_015466_p65 hypothetical protein RDJLphi1_gp65 singleton unknown function unknown function -1 40659 40952
YP_004421788.1 NC_015466_p20 hypothetical protein RDJLphi1_gp20 phrog_34628 unknown function unknown function -1 11068 11268
YP_004421834.1 NC_015466_p66 hypothetical protein RDJLphi1_gp66 singleton unknown function unknown function -1 40981 41193
YP_004421778.1 NC_015466_p10 hypothetical protein RDJLphi1_gp10 phrog_26036 unknown function unknown function -1 5298 5534
YP_004421806.1 NC_015466_p38 hypothetical protein RDJLphi1_gp38 phrog_31864 unknown function unknown function -1 22762 23694
YP_004421801.1 NC_015466_p33 hypothetical protein RDJLphi1_gp33 phrog_36992 unknown function unknown function 1 20003 20305
YP_004421820.1 NC_015466_p52 hypothetical protein RDJLphi1_gp52 phrog_30970 unknown function unknown function 1 31699 32037
YP_004421844.1 NC_015466_p76 hypothetical protein RDJLphi1_gp76 phrog_169 tail completion or Neck1 protein connector 1 48682 49092
YP_004421829.1 NC_015466_p61 hypothetical protein RDJLphi1_gp61 phrog_17001 endolysin lysis 1 36921 37580
YP_004421840.1 NC_015466_p72 hypothetical protein RDJLphi1_gp72 phrog_24785 unknown function unknown function 1 45252 46364
YP_004421782.1 NC_015466_p14 hypothetical protein RDJLphi1_gp14 phrog_2165 DNA helicase DNA, RNA and nucleotide metabolism -1 6886 7350
YP_004421798.1 NC_015466_p30 hypothetical protein RDJLphi1_gp30 phrog_38812 unknown function unknown function -1 18123 18374
YP_004421835.1 NC_015466_p67 hypothetical protein RDJLphi1_gp67 phrog_113 portal protein head and packaging 1 41363 42802
YP_004421781.1 NC_015466_p13 hypothetical protein RDJLphi1_gp13 phrog_34896 unknown function unknown function 1 6610 6885
YP_004421852.1 NC_015466_p84 gene transfer agent phrog_4271 tail protein tail 1 56975 61060
YP_004421792.1 NC_015466_p24 phosphohydrolase phrog_21461 phosphohydrolase other -1 13654 13899
YP_004421777.1 NC_015466_p9 hypothetical protein RDJLphi1_gp09 singleton unknown function unknown function -1 5137 5310
YP_004421842.1 NC_015466_p74 capsid related protein phrog_1005 major head protein head and packaging 1 46906 47940
YP_004421789.1 NC_015466_p21 hypothetical protein RDJLphi1_gp21 phrog_38698 unknown function unknown function -1 11362 11664
YP_004421832.1 NC_015466_p64 hypothetical protein RDJLphi1_gp64 singleton unknown function unknown function -1 39979 40596
YP_004421813.1 NC_015466_p45 hypothetical protein RDJLphi1_gp45 phrog_38816 unknown function unknown function -1 26471 26686
YP_004421809.1 NC_015466_p41 hypothetical protein RDJLphi1_gp41 phrog_32083 unknown function unknown function -1 24288 24569
YP_004421797.1 NC_015466_p29 hypothetical protein RDJLphi1_gp29 phrog_2855 unknown function unknown function -1 17870 18106
YP_004421812.1 NC_015466_p44 hypothetical protein RDJLphi1_gp44 phrog_30481 unknown function unknown function -1 26269 26478
YP_004421822.1 NC_015466_p54 hypothetical protein RDJLphi1_gp54 phrog_28846 unknown function unknown function 1 33491 33895
YP_004421769.1 NC_015466_p1 hypothetical protein RDJLphi1_gp01 phrog_739 Rz-like spanin lysis 1 1 432
YP_004421772.1 NC_015466_p4 hypothetical protein RDJLphi1_gp04 phrog_704 DNA repair exonuclease DNA, RNA and nucleotide metabolism 1 1058 1987
YP_004421848.1 NC_015466_p80 tail tape measure protein phrog_38390 tail length tape measure protein tail 1 51941 55030
YP_004421841.1 NC_015466_p73 hypothetical protein RDJLphi1_gp73 phrog_673 head scaffolding protein head and packaging 1 46442 46867
YP_004421771.1 NC_015466_p3 hypothetical protein RDJLphi1_gp03 phrog_6420 unknown function unknown function 1 693 1013
YP_004421831.1 NC_015466_p63 phage terminase large subunit phrog_2 terminase large subunit head and packaging 1 38331 39689
YP_004421795.1 NC_015466_p27 hypothetical protein RDJLphi1_gp27 singleton unknown function unknown function 1 14993 15313