Genomic map of Clostridium phage phiCD38-2 (NC_015568)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_015568
Definition
Clostridium phage phiCD38-2, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae.
DB of origin
REFSEQ
Length
41090
Host Name
Clostridium difficile
Host domain
Bacteria
Is prophage?
undef
Number of proteins
55
%GC
30.82
Number of singletons
0
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_004508414.1 NC_015568_p36 hypothetical protein phrog_6335 unknown function unknown function 1 33123 33470
YP_004508383.1 NC_015568_p5 hypothetical protein phrog_419 unknown function unknown function 1 4684 4968
YP_004508388.1 NC_015568_p10 hypothetical protein phrog_556 minor head protein head and packaging 1 7533 7880
YP_004508397.1 NC_015568_p19 hypothetical protein phrog_6130 unknown function unknown function 1 19081 19323
YP_004508427.1 NC_015568_p49 ssDNA binding protein phrog_44 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 37745 38071
YP_004508395.1 NC_015568_p17 tail component protein phrog_33 distal tail protein Dit tail 1 16191 16925
YP_004508407.1 NC_015568_p29 hypothetical protein phrog_4741 unknown function unknown function -1 27809 28141
YP_004508399.1 NC_015568_p21 tail fiber protein phrog_7809 tail fiber protein tail 1 21800 23650
YP_004508426.1 NC_015568_p48 hypothetical protein phrog_6827 unknown function unknown function 1 37632 37748
YP_004508412.1 NC_015568_p34 secreted protein phrog_15816 unknown function unknown function 1 30432 30617
YP_004508385.1 NC_015568_p7 phage coat protein phrog_247 major head protein head and packaging 1 5681 6754
YP_004508393.1 NC_015568_p15 hypothetical protein phrog_7974 unknown function unknown function 1 10168 10809
YP_004508402.1 NC_015568_p24 hypothetical protein phrog_3 transcriptional repressor transcription regulation -1 24855 25067
YP_004508390.1 NC_015568_p12 hypothetical protein phrog_3099 unknown function unknown function 1 8311 9111
YP_004508430.1 NC_015568_p52 sigma70/sigmaF-like protein phrog_36 transcriptional regulator transcription regulation 1 38697 39269
YP_004508432.1 NC_015568_p54 hypothetical protein phrog_27502 unknown function unknown function 1 40265 40372
YP_004508379.1 NC_015568_p1 terminase small subunit phrog_509 terminase small subunit head and packaging 1 29 736
YP_004508392.1 NC_015568_p14 hypothetical protein phrog_706 unknown function unknown function 1 9489 10094
YP_004508424.1 NC_015568_p46 hypothetical protein phrog_2569 unknown function unknown function 1 37279 37428
YP_004508411.1 NC_015568_p33 hypothetical protein phrog_738 unknown function unknown function -1 30239 30391
YP_004508387.1 NC_015568_p9 hypothetical protein phrog_3366 unknown function unknown function 1 7092 7526
YP_004508405.1 NC_015568_p27 hypothetical protein phrog_4337 unknown function unknown function 1 26681 27151
YP_004508384.1 NC_015568_p6 scaffolding protein phrog_194 head scaffolding protein head and packaging 1 5098 5670
YP_004508394.1 NC_015568_p16 tail tape measure phrog_1272 tail length tape measure protein tail 1 10920 16070
YP_004508418.1 NC_015568_p40 hypothetical protein phrog_6407 unknown function unknown function 1 34816 34998
YP_004508404.1 NC_015568_p26 hypothetical protein phrog_6809 unknown function unknown function 1 26155 26661
YP_004508416.1 NC_015568_p38 hypothetical protein phrog_19640 unknown function unknown function 1 34150 34245
YP_004508381.1 NC_015568_p3 minor capsid protein phrog_533 portal protein head and packaging 1 2046 3458
YP_004508401.1 NC_015568_p23 endolysine phrog_435 endolysin lysis 1 24000 24806
YP_004508400.1 NC_015568_p22 holin phrog_4884 holin lysis 1 23736 23999
YP_004508428.1 NC_015568_p50 hypothetical protein phrog_1310 unknown function unknown function 1 38163 38528
YP_004508419.1 NC_015568_p41 hypothetical protein phrog_4206 unknown function unknown function 1 35065 35490
YP_004508433.1 NC_015568_p55 recombinase/resolvase phrog_125 DNA invertase DNA, RNA and nucleotide metabolism 1 40521 41090
YP_004508398.1 NC_015568_p20 tail fiber protein phrog_9525 tail fiber protein tail 1 19338 21800
YP_004508422.1 NC_015568_p44 hypothetical protein phrog_2065 unknown function unknown function 1 36761 36925
YP_004508403.1 NC_015568_p25 hypothetical protein phrog_6775 unknown function unknown function 1 25246 26076
YP_004508380.1 NC_015568_p2 terminase large subunit phrog_2 terminase large subunit head and packaging 1 723 2045
YP_004508391.1 NC_015568_p13 hypothetical protein phrog_4450 unknown function unknown function 1 9127 9489
YP_004508406.1 NC_015568_p28 hypothetical protein phrog_4021 unknown function unknown function -1 27384 27665
YP_004508389.1 NC_015568_p11 hypothetical protein phrog_3266 tail completion connector 1 7877 8308
YP_004508415.1 NC_015568_p37 hypothetical protein phrog_28159 unknown function unknown function 1 33683 33793
YP_004508396.1 NC_015568_p18 tail protein/endopeptidase phrog_8687 tail protein with peptidase activity other 1 17285 19054
YP_004508429.1 NC_015568_p51 hypothetical protein phrog_7197 unknown function unknown function 1 38512 38685
YP_004508410.1 NC_015568_p32 hypothetical protein phrog_5134 unknown function unknown function -1 29660 29788
YP_004508423.1 NC_015568_p45 hypothetical protein phrog_5442 unknown function unknown function 1 36922 37233
YP_004508382.1 NC_015568_p4 minor capsid protein phrog_581 minor head protein head and packaging 1 3459 4691
YP_004508417.1 NC_015568_p39 CI phage repressor phrog_8 transcriptional regulator transcription regulation -1 34290 34643
YP_004508409.1 NC_015568_p31 hypothetical protein phrog_2329 unknown function unknown function -1 29238 29420
YP_004508425.1 NC_015568_p47 hypothetical protein phrog_3221 unknown function unknown function 1 37459 37632
YP_004508413.1 NC_015568_p35 DNAse/helicase protein phrog_5173 unknown function unknown function 1 30911 33076
YP_004508386.1 NC_015568_p8 hypothetical protein phrog_541 head-tail adaptor connector 1 6758 7090
YP_004508408.1 NC_015568_p30 para phrog_164 ParA-like partition protein DNA, RNA and nucleotide metabolism -1 28142 28882
YP_004508421.1 NC_015568_p43 hypothetical protein phrog_1029 unknown function unknown function 1 35992 36705
YP_004508431.1 NC_015568_p53 integrase phrog_216 integrase integration and excision 1 39447 40055
YP_004508420.1 NC_015568_p42 replication terminator protein phrog_997 replication terminator DNA, RNA and nucleotide metabolism 1 35565 35969