| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_015568 |
Definition |
Clostridium phage phiCD38-2, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae. |
DB of origin |
REFSEQ |
Length |
41090 |
Host Name |
Clostridium difficile |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
55 |
%GC |
30.82 |
Number of singletons |
0 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_004508414.1 | NC_015568_p36 | hypothetical protein | phrog_6335 | unknown function | unknown function | 1 | 33123 | 33470 |
| YP_004508383.1 | NC_015568_p5 | hypothetical protein | phrog_419 | unknown function | unknown function | 1 | 4684 | 4968 |
| YP_004508388.1 | NC_015568_p10 | hypothetical protein | phrog_556 | minor head protein | head and packaging | 1 | 7533 | 7880 |
| YP_004508397.1 | NC_015568_p19 | hypothetical protein | phrog_6130 | unknown function | unknown function | 1 | 19081 | 19323 |
| YP_004508427.1 | NC_015568_p49 | ssDNA binding protein | phrog_44 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 37745 | 38071 |
| YP_004508395.1 | NC_015568_p17 | tail component protein | phrog_33 | distal tail protein Dit | tail | 1 | 16191 | 16925 |
| YP_004508407.1 | NC_015568_p29 | hypothetical protein | phrog_4741 | unknown function | unknown function | -1 | 27809 | 28141 |
| YP_004508399.1 | NC_015568_p21 | tail fiber protein | phrog_7809 | tail fiber protein | tail | 1 | 21800 | 23650 |
| YP_004508426.1 | NC_015568_p48 | hypothetical protein | phrog_6827 | unknown function | unknown function | 1 | 37632 | 37748 |
| YP_004508412.1 | NC_015568_p34 | secreted protein | phrog_15816 | unknown function | unknown function | 1 | 30432 | 30617 |
| YP_004508385.1 | NC_015568_p7 | phage coat protein | phrog_247 | major head protein | head and packaging | 1 | 5681 | 6754 |
| YP_004508393.1 | NC_015568_p15 | hypothetical protein | phrog_7974 | unknown function | unknown function | 1 | 10168 | 10809 |
| YP_004508402.1 | NC_015568_p24 | hypothetical protein | phrog_3 | transcriptional repressor | transcription regulation | -1 | 24855 | 25067 |
| YP_004508390.1 | NC_015568_p12 | hypothetical protein | phrog_3099 | unknown function | unknown function | 1 | 8311 | 9111 |
| YP_004508430.1 | NC_015568_p52 | sigma70/sigmaF-like protein | phrog_36 | transcriptional regulator | transcription regulation | 1 | 38697 | 39269 |
| YP_004508432.1 | NC_015568_p54 | hypothetical protein | phrog_27502 | unknown function | unknown function | 1 | 40265 | 40372 |
| YP_004508379.1 | NC_015568_p1 | terminase small subunit | phrog_509 | terminase small subunit | head and packaging | 1 | 29 | 736 |
| YP_004508392.1 | NC_015568_p14 | hypothetical protein | phrog_706 | unknown function | unknown function | 1 | 9489 | 10094 |
| YP_004508424.1 | NC_015568_p46 | hypothetical protein | phrog_2569 | unknown function | unknown function | 1 | 37279 | 37428 |
| YP_004508411.1 | NC_015568_p33 | hypothetical protein | phrog_738 | unknown function | unknown function | -1 | 30239 | 30391 |
| YP_004508387.1 | NC_015568_p9 | hypothetical protein | phrog_3366 | unknown function | unknown function | 1 | 7092 | 7526 |
| YP_004508405.1 | NC_015568_p27 | hypothetical protein | phrog_4337 | unknown function | unknown function | 1 | 26681 | 27151 |
| YP_004508384.1 | NC_015568_p6 | scaffolding protein | phrog_194 | head scaffolding protein | head and packaging | 1 | 5098 | 5670 |
| YP_004508394.1 | NC_015568_p16 | tail tape measure | phrog_1272 | tail length tape measure protein | tail | 1 | 10920 | 16070 |
| YP_004508418.1 | NC_015568_p40 | hypothetical protein | phrog_6407 | unknown function | unknown function | 1 | 34816 | 34998 |
| YP_004508404.1 | NC_015568_p26 | hypothetical protein | phrog_6809 | unknown function | unknown function | 1 | 26155 | 26661 |
| YP_004508416.1 | NC_015568_p38 | hypothetical protein | phrog_19640 | unknown function | unknown function | 1 | 34150 | 34245 |
| YP_004508381.1 | NC_015568_p3 | minor capsid protein | phrog_533 | portal protein | head and packaging | 1 | 2046 | 3458 |
| YP_004508401.1 | NC_015568_p23 | endolysine | phrog_435 | endolysin | lysis | 1 | 24000 | 24806 |
| YP_004508400.1 | NC_015568_p22 | holin | phrog_4884 | holin | lysis | 1 | 23736 | 23999 |
| YP_004508428.1 | NC_015568_p50 | hypothetical protein | phrog_1310 | unknown function | unknown function | 1 | 38163 | 38528 |
| YP_004508419.1 | NC_015568_p41 | hypothetical protein | phrog_4206 | unknown function | unknown function | 1 | 35065 | 35490 |
| YP_004508433.1 | NC_015568_p55 | recombinase/resolvase | phrog_125 | DNA invertase | DNA, RNA and nucleotide metabolism | 1 | 40521 | 41090 |
| YP_004508398.1 | NC_015568_p20 | tail fiber protein | phrog_9525 | tail fiber protein | tail | 1 | 19338 | 21800 |
| YP_004508422.1 | NC_015568_p44 | hypothetical protein | phrog_2065 | unknown function | unknown function | 1 | 36761 | 36925 |
| YP_004508403.1 | NC_015568_p25 | hypothetical protein | phrog_6775 | unknown function | unknown function | 1 | 25246 | 26076 |
| YP_004508380.1 | NC_015568_p2 | terminase large subunit | phrog_2 | terminase large subunit | head and packaging | 1 | 723 | 2045 |
| YP_004508391.1 | NC_015568_p13 | hypothetical protein | phrog_4450 | unknown function | unknown function | 1 | 9127 | 9489 |
| YP_004508406.1 | NC_015568_p28 | hypothetical protein | phrog_4021 | unknown function | unknown function | -1 | 27384 | 27665 |
| YP_004508389.1 | NC_015568_p11 | hypothetical protein | phrog_3266 | tail completion | connector | 1 | 7877 | 8308 |
| YP_004508415.1 | NC_015568_p37 | hypothetical protein | phrog_28159 | unknown function | unknown function | 1 | 33683 | 33793 |
| YP_004508396.1 | NC_015568_p18 | tail protein/endopeptidase | phrog_8687 | tail protein with peptidase activity | other | 1 | 17285 | 19054 |
| YP_004508429.1 | NC_015568_p51 | hypothetical protein | phrog_7197 | unknown function | unknown function | 1 | 38512 | 38685 |
| YP_004508410.1 | NC_015568_p32 | hypothetical protein | phrog_5134 | unknown function | unknown function | -1 | 29660 | 29788 |
| YP_004508423.1 | NC_015568_p45 | hypothetical protein | phrog_5442 | unknown function | unknown function | 1 | 36922 | 37233 |
| YP_004508382.1 | NC_015568_p4 | minor capsid protein | phrog_581 | minor head protein | head and packaging | 1 | 3459 | 4691 |
| YP_004508417.1 | NC_015568_p39 | CI phage repressor | phrog_8 | transcriptional regulator | transcription regulation | -1 | 34290 | 34643 |
| YP_004508409.1 | NC_015568_p31 | hypothetical protein | phrog_2329 | unknown function | unknown function | -1 | 29238 | 29420 |
| YP_004508425.1 | NC_015568_p47 | hypothetical protein | phrog_3221 | unknown function | unknown function | 1 | 37459 | 37632 |
| YP_004508413.1 | NC_015568_p35 | DNAse/helicase protein | phrog_5173 | unknown function | unknown function | 1 | 30911 | 33076 |
| YP_004508386.1 | NC_015568_p8 | hypothetical protein | phrog_541 | head-tail adaptor | connector | 1 | 6758 | 7090 |
| YP_004508408.1 | NC_015568_p30 | para | phrog_164 | ParA-like partition protein | DNA, RNA and nucleotide metabolism | -1 | 28142 | 28882 |
| YP_004508421.1 | NC_015568_p43 | hypothetical protein | phrog_1029 | unknown function | unknown function | 1 | 35992 | 36705 |
| YP_004508431.1 | NC_015568_p53 | integrase | phrog_216 | integrase | integration and excision | 1 | 39447 | 40055 |
| YP_004508420.1 | NC_015568_p42 | replication terminator protein | phrog_997 | replication terminator | DNA, RNA and nucleotide metabolism | 1 | 35565 | 35969 |