| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_015584 |
Definition |
Mycobacterium phage Faith1, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Bronvirus. |
DB of origin |
REFSEQ |
Length |
75960 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
129 |
%GC |
58.91 |
Number of singletons |
1 |
Number of paralogs |
2 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_004539060.1 | NC_015584_p116 | hypothetical protein | phrog_3777 | unknown function | unknown function | -1 | 68573 | 68974 |
| YP_004539067.1 | NC_015584_p123 | hypothetical protein | phrog_1909 | unknown function | unknown function | -1 | 71325 | 72176 |
| YP_004539065.1 | NC_015584_p121 | hypothetical protein | phrog_6968 | unknown function | unknown function | -1 | 69864 | 70067 |
| YP_004539032.1 | NC_015584_p88 | RNA ligase | phrog_968 | RNA ligase | DNA, RNA and nucleotide metabolism | 1 | 56203 | 57501 |
| YP_004539050.1 | NC_015584_p106 | hypothetical protein | phrog_940 | nuclease | DNA, RNA and nucleotide metabolism | 1 | 64487 | 65176 |
| YP_004538973.1 | NC_015584_p29 | hypothetical protein | phrog_5963 | holin | lysis | 1 | 27279 | 27752 |
| YP_004538958.1 | NC_015584_p14 | tail assembly chaperone | phrog_2624 | tail assembly chaperone | tail | 1 | 9991 | 10814 |
| YP_004538983.1 | NC_015584_p39 | hypothetical protein | phrog_950 | unknown function | unknown function | -1 | 32960 | 33739 |
| YP_004539063.1 | NC_015584_p119 | hypothetical protein | phrog_6004 | unknown function | unknown function | -1 | 69461 | 69724 |
| YP_004538978.1 | NC_015584_p34 | hypothetical protein | phrog_9776 | unknown function | unknown function | -1 | 29108 | 29395 |
| YP_004539020.1 | NC_015584_p76 | polynucleotide kinase | phrog_505 | polynucleotide kinase | other | 1 | 51935 | 52861 |
| YP_004539033.1 | NC_015584_p89 | hypothetical protein | phrog_3641 | unknown function | unknown function | 1 | 57485 | 57664 |
| YP_004539030.1 | NC_015584_p86 | hypothetical protein | phrog_353 | toxin | moron, auxiliary metabolic gene and host takeover | 1 | 55920 | 56138 |
| YP_004539040.1 | NC_015584_p96 | hypothetical protein | phrog_1042 | unknown function | unknown function | 1 | 59969 | 60229 |
| YP_004538964.1 | NC_015584_p20 | hypothetical protein | phrog_2689 | minor tail protein | tail | 1 | 19225 | 21024 |
| YP_004539003.1 | NC_015584_p59 | hypothetical protein | phrog_5858 | unknown function | unknown function | 1 | 43082 | 43258 |
| YP_004539048.1 | NC_015584_p104 | hypothetical protein | phrog_10206 | unknown function | unknown function | 1 | 62750 | 62890 |
| YP_004538969.1 | NC_015584_p25 | hypothetical protein | phrog_9833 | unknown function | unknown function | 1 | 24257 | 24406 |
| YP_004539055.1 | NC_015584_p111 | hypothetical protein | phrog_4776 | unknown function | unknown function | -1 | 66347 | 67063 |
| YP_004539061.1 | NC_015584_p117 | hypothetical protein | phrog_6224 | unknown function | unknown function | -1 | 68981 | 69190 |
| YP_004538974.1 | NC_015584_p30 | hypothetical protein | phrog_5807 | unknown function | unknown function | 1 | 27752 | 28006 |
| YP_004538954.1 | NC_015584_p10 | hypothetical protein | phrog_5309 | head-tail adaptor | connector | 1 | 7692 | 8030 |
| YP_004538985.1 | NC_015584_p41 | hypothetical protein | phrog_1702 | transcriptional repressor | transcription regulation | 1 | 34392 | 34697 |
| YP_004538993.1 | NC_015584_p49 | hypothetical protein | phrog_6017 | unknown function | unknown function | 1 | 37941 | 38258 |
| YP_004539022.1 | NC_015584_p78 | hypothetical protein | phrog_7155 | unknown function | unknown function | 1 | 52976 | 53218 |
| YP_004539034.1 | NC_015584_p90 | ClpP-like protease | phrog_94 | head maturation protease | head and packaging | 1 | 57661 | 58332 |
| YP_004539041.1 | NC_015584_p97 | hypothetical protein | phrog_4472 | nucleotide kinase | other | 1 | 60204 | 60620 |
| YP_004539009.1 | NC_015584_p65 | hypothetical protein | phrog_7527 | unknown function | unknown function | 1 | 45676 | 45960 |
| YP_004539047.1 | NC_015584_p103 | hypothetical protein | phrog_6800 | unknown function | unknown function | 1 | 62464 | 62640 |
| YP_004538966.1 | NC_015584_p22 | hypothetical protein | phrog_4137 | unknown function | unknown function | 1 | 21190 | 21465 |
| YP_004539064.1 | NC_015584_p120 | hypothetical protein | phrog_8547 | unknown function | unknown function | -1 | 69728 | 69862 |
| YP_004538952.1 | NC_015584_p8 | major capsid protein | phrog_283 | major head protein | head and packaging | 1 | 6070 | 7218 |
| YP_004538986.1 | NC_015584_p42 | hypothetical protein | phrog_66 | excisionase and transcriptional regulator | integration and excision | 1 | 34694 | 34909 |
| YP_004539057.1 | NC_015584_p113 | hypothetical protein | phrog_6739 | unknown function | unknown function | -1 | 67260 | 67358 |
| YP_004539013.1 | NC_015584_p69 | hypothetical protein | phrog_1882 | unknown function | unknown function | 1 | 46903 | 47583 |
| YP_004539027.1 | NC_015584_p83 | hypothetical protein | phrog_1941 | unknown function | unknown function | 1 | 54609 | 54839 |
| YP_004539069.1 | NC_015584_p125 | hypothetical protein | phrog_26032 | unknown function | unknown function | -1 | 73980 | 74246 |
| YP_004539021.1 | NC_015584_p77 | hypothetical protein | phrog_14542 | unknown function | unknown function | 1 | 52861 | 52992 |
| YP_004538949.1 | NC_015584_p5 | portal | phrog_104 | portal protein | head and packaging | 1 | 2638 | 4293 |
| YP_004539070.1 | NC_015584_p126 | hypothetical protein | phrog_16092 | unknown function | unknown function | -1 | 74243 | 74473 |
| YP_004538960.1 | NC_015584_p16 | tapemeasure | phrog_3547 | tail length tape measure protein | tail | 1 | 10856 | 15985 |
| YP_004538998.1 | NC_015584_p54 | hypothetical protein | phrog_2380 | unknown function | unknown function | 1 | 40165 | 40404 |
| YP_004539007.1 | NC_015584_p63 | hypothetical protein | phrog_155 | Erf-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 44724 | 45479 |
| YP_004539044.1 | NC_015584_p100 | hypothetical protein | phrog_338 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 61712 | 62134 |
| YP_004539058.1 | NC_015584_p114 | hypothetical protein | phrog_6230 | unknown function | unknown function | -1 | 67351 | 67614 |
| YP_004539042.1 | NC_015584_p98 | DnaQ-like | phrog_403 | DNA polymerase exonuclease subunit | DNA, RNA and nucleotide metabolism | 1 | 60617 | 61399 |
| YP_004538989.1 | NC_015584_p45 | hypothetical protein | phrog_572 | unknown function | unknown function | 1 | 35347 | 35772 |
| YP_004538957.1 | NC_015584_p13 | major tail protein | phrog_476 | major tail protein | tail | 1 | 9002 | 9901 |
| YP_004539062.1 | NC_015584_p118 | hypothetical protein | phrog_7390 | unknown function | unknown function | -1 | 69180 | 69374 |
| YP_004538982.1 | NC_015584_p38 | tyrosine integrase | phrog_1 | integrase | integration and excision | 1 | 31656 | 32963 |
| YP_004538975.1 | NC_015584_p31 | hypothetical protein | phrog_726 | unknown function | unknown function | 1 | 28009 | 28431 |
| YP_004538968.1 | NC_015584_p24 | structural protein | phrog_9784 | minor tail protein | tail | 1 | 21937 | 24225 |
| YP_004538967.1 | NC_015584_p23 | hypothetical protein | phrog_240 | head protein | head and packaging | 1 | 21550 | 21936 |
| YP_004538996.1 | NC_015584_p52 | hypothetical protein | phrog_200 | lipoprotein | other | 1 | 38647 | 39606 |
| YP_004538977.1 | NC_015584_p33 | hypothetical protein | phrog_6558 | unknown function | unknown function | -1 | 28758 | 29102 |
| YP_004539010.1 | NC_015584_p66 | hypothetical protein | phrog_1389 | unknown function | unknown function | 1 | 45957 | 46316 |
| YP_004538984.1 | NC_015584_p40 | hypothetical protein | phrog_1746 | transcriptional repressor | transcription regulation | -1 | 33891 | 34280 |
| YP_004539052.1 | NC_015584_p108 | hypothetical protein | phrog_10010 | unknown function | unknown function | -1 | 65690 | 65836 |
| YP_004538980.1 | NC_015584_p36 | Lsr2 | phrog_1223 | nucloid associated Lsr2-like | DNA, RNA and nucleotide metabolism | -1 | 30213 | 30674 |
| YP_004539046.1 | NC_015584_p102 | hypothetical protein | phrog_6027 | unknown function | unknown function | 1 | 62345 | 62464 |
| YP_004538994.1 | NC_015584_p50 | hypothetical protein | phrog_7316 | unknown function | unknown function | 1 | 38266 | 38394 |
| YP_004538959.1 | NC_015584_p15 | G-like tail assembly chaperone | phrog_4464 | tail assembly chaperone | tail | 1 | 9991 | 10290 |
| YP_004538981.1 | NC_015584_p37 | hypothetical protein | phrog_10128 | unknown function | unknown function | -1 | 30751 | 31119 |
| YP_004538951.1 | NC_015584_p7 | scaffolding | phrog_3760 | head scaffolding protein | head and packaging | 1 | 5422 | 6027 |
| YP_004539015.1 | NC_015584_p71 | hypothetical protein | phrog_1821 | transcriptional regulator WhiB-like | transcription regulation | 1 | 48842 | 49096 |
| YP_004539025.1 | NC_015584_p81 | WhiB | phrog_472 | WhiB transcriptional factor | transcription regulation | 1 | 53918 | 54214 |
| YP_004538950.1 | NC_015584_p6 | hypothetical protein | phrog_193 | head maturation protease | head and packaging | 1 | 4311 | 5369 |
| YP_004539038.1 | NC_015584_p94 | hypothetical protein | phrog_1969 | unknown function | unknown function | 1 | 59066 | 59404 |
| YP_004538976.1 | NC_015584_p32 | NrdH-like glutaredoxin | phrog_22 | thioredoxin domain | DNA, RNA and nucleotide metabolism | 1 | 28422 | 28688 |
| YP_004539001.1 | NC_015584_p57 | secreted protein | phrog_301 | secreted protein | other | 1 | 42443 | 42778 |
| YP_004538956.1 | NC_015584_p12 | hypothetical protein | phrog_123 | tail terminator | connector | 1 | 8471 | 8974 |
| YP_004538961.1 | NC_015584_p17 | minor tail subunit | phrog_106 | minor tail protein | tail | 1 | 16074 | 16988 |
| YP_004538965.1 | NC_015584_p21 | hypothetical protein | phrog_9672 | minor tail protein | tail | 1 | 21030 | 21200 |
| YP_004538999.1 | NC_015584_p55 | hypothetical protein | phrog_850 | RNA-binding protein | DNA, RNA and nucleotide metabolism | 1 | 40520 | 41950 |
| YP_004538979.1 | NC_015584_p35 | NrdC-like nucleotidyltransferase | phrog_388 | nucleotidyltransferase | DNA, RNA and nucleotide metabolism | -1 | 29380 | 30126 |
| YP_004538970.1 | NC_015584_p26 | hypothetical protein | phrog_3856 | minor tail protein | tail | 1 | 24407 | 25348 |
| YP_004539019.1 | NC_015584_p75 | nicotinate phosphoribosyltransferase | phrog_448 | nicotinamide phosphoribosyl transferase | other | 1 | 50364 | 51848 |
| YP_004538963.1 | NC_015584_p19 | hypothetical protein | phrog_4413 | minor tail protein | tail | 1 | 18747 | 19244 |
| YP_004539035.1 | NC_015584_p91 | hypothetical protein | phrog_7495 | unknown function | unknown function | 1 | 58332 | 58727 |
| YP_004539043.1 | NC_015584_p99 | hypothetical protein | phrog_397 | unknown function | unknown function | 1 | 61400 | 61582 |
| YP_004539017.1 | NC_015584_p73 | hypothetical protein | phrog_6206 | unknown function | unknown function | 1 | 49373 | 49519 |
| YP_004539000.1 | NC_015584_p56 | hypothetical protein | phrog_4670 | unknown function | unknown function | 1 | 42319 | 42450 |
| YP_004538995.1 | NC_015584_p51 | hypothetical protein | phrog_9674 | unknown function | unknown function | 1 | 38431 | 38559 |
| YP_004538955.1 | NC_015584_p11 | hypothetical protein | phrog_5775 | head-tail connector protein | connector | 1 | 8030 | 8461 |
| YP_004538992.1 | NC_015584_p48 | hypothetical protein | phrog_9705 | unknown function | unknown function | 1 | 37619 | 37954 |
| YP_004539045.1 | NC_015584_p101 | hypothetical protein | phrog_3699 | unknown function | unknown function | 1 | 62134 | 62352 |
| YP_004539036.1 | NC_015584_p92 | hypothetical protein | phrog_7890 | unknown function | unknown function | 1 | 58727 | 58837 |
| YP_004539037.1 | NC_015584_p93 | hypothetical protein | phrog_2218 | unknown function | unknown function | 1 | 58834 | 59073 |
| YP_004539006.1 | NC_015584_p62 | hypothetical protein | phrog_1123 | unknown function | unknown function | 1 | 44409 | 44723 |
| YP_004539053.1 | NC_015584_p109 | hypothetical protein | phrog_2124 | unknown function | unknown function | -1 | 65833 | 65973 |
| YP_004538962.1 | NC_015584_p18 | minor tail subunit | phrog_110 | minor tail protein | tail | 1 | 16989 | 18722 |
| YP_004539071.1 | NC_015584_p127 | hypothetical protein | phrog_14714 | unknown function | unknown function | -1 | 74485 | 74649 |
| YP_004539012.1 | NC_015584_p68 | hypothetical protein | phrog_542 | unknown function | unknown function | 1 | 46673 | 46906 |
| YP_004538947.1 | NC_015584_p3 | hypothetical protein | phrog_6976 | unknown function | unknown function | 1 | 866 | 1069 |
| YP_004538972.1 | NC_015584_p28 | lysin B | phrog_102 | endolysin | lysis | 1 | 26303 | 27274 |
| YP_004539024.1 | NC_015584_p80 | hypothetical protein | phrog_34 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 53557 | 53970 |
| YP_004539011.1 | NC_015584_p67 | hypothetical protein | singleton | unknown function | unknown function | -1 | 46324 | 46599 |
| YP_004539018.1 | NC_015584_p74 | phosphoribosyl-pyrophosphate synthetase | phrog_619 | ribose-phosphate pyrophosphokinase | other | 1 | 49504 | 50367 |
| YP_004539051.1 | NC_015584_p107 | hypothetical protein | phrog_6170 | unknown function | unknown function | 1 | 65183 | 65539 |
| YP_004539031.1 | NC_015584_p87 | hypothetical protein | phrog_14246 | unknown function | unknown function | 1 | 56135 | 56206 |
| YP_004538946.1 | NC_015584_p2 | terminase small subunit | phrog_1496 | terminase small subunit | head and packaging | 1 | 477 | 866 |
| YP_004539056.1 | NC_015584_p112 | hypothetical protein | phrog_15796 | unknown function | unknown function | -1 | 67109 | 67267 |
| YP_004539068.1 | NC_015584_p124 | hypothetical protein | phrog_249 | porphyrin biosynthesis | moron, auxiliary metabolic gene and host takeover | -1 | 72386 | 73624 |
| YP_004539016.1 | NC_015584_p72 | hypothetical protein | phrog_6624 | unknown function | unknown function | 1 | 49129 | 49383 |
| YP_004538988.1 | NC_015584_p44 | hypothetical protein | phrog_8707 | unknown function | unknown function | 1 | 35249 | 35359 |
| YP_004539023.1 | NC_015584_p79 | hypothetical protein | phrog_6064 | unknown function | unknown function | 1 | 53215 | 53400 |
| YP_004539029.1 | NC_015584_p85 | single-stranded DNA binding protein | phrog_44 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 55471 | 55857 |
| YP_004539008.1 | NC_015584_p64 | hypothetical protein | phrog_5917 | Erf-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 45479 | 45679 |
| YP_004539066.1 | NC_015584_p122 | hypothetical protein | phrog_6176 | unknown function | unknown function | 1 | 70127 | 70609 |
| YP_004538987.1 | NC_015584_p43 | hypothetical protein | phrog_762 | unknown function | unknown function | 1 | 34906 | 35268 |
| YP_004539026.1 | NC_015584_p82 | WhiB | phrog_472 | WhiB transcriptional factor | transcription regulation | 1 | 54215 | 54619 |
| YP_004539004.1 | NC_015584_p60 | hypothetical protein | phrog_7425 | unknown function | unknown function | 1 | 43251 | 43454 |
| YP_004539054.1 | NC_015584_p110 | hypothetical protein | phrog_2869 | unknown function | unknown function | -1 | 66054 | 66245 |
| YP_004539005.1 | NC_015584_p61 | hypothetical protein | phrog_466 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 43496 | 44428 |
| YP_004538997.1 | NC_015584_p53 | hypothetical protein | phrog_4870 | unknown function | unknown function | 1 | 39745 | 40164 |
| YP_004539014.1 | NC_015584_p70 | DnaC-like DNA helicase | phrog_19 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | 1 | 47580 | 48845 |
| YP_004538971.1 | NC_015584_p27 | lysin A | phrog_1512 | endolysin | lysis | 1 | 25353 | 26303 |
| YP_004539073.1 | NC_015584_p129 | hypothetical protein | phrog_15448 | unknown function | unknown function | -1 | 75186 | 75311 |
| YP_004539059.1 | NC_015584_p115 | hypothetical protein | phrog_1909 | unknown function | unknown function | -1 | 67625 | 68476 |
| YP_004538953.1 | NC_015584_p9 | hypothetical protein | phrog_137 | head-tail adaptor Ad1 | connector | 1 | 7231 | 7695 |
| YP_004538948.1 | NC_015584_p4 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 1069 | 2637 |
| YP_004538990.1 | NC_015584_p46 | hypothetical protein | phrog_5916 | unknown function | unknown function | 1 | 36246 | 36611 |
| YP_004539049.1 | NC_015584_p105 | hypothetical protein | phrog_30313 | unknown function | unknown function | 1 | 63673 | 63804 |
| YP_004539002.1 | NC_015584_p58 | hypothetical protein | phrog_5872 | unknown function | unknown function | 1 | 42768 | 43085 |
| YP_004539039.1 | NC_015584_p95 | HNH-endonuclease like domain | phrog_959 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 59452 | 59865 |
| YP_004539072.1 | NC_015584_p128 | hypothetical protein | phrog_7398 | unknown function | unknown function | -1 | 74649 | 75092 |
| YP_004538991.1 | NC_015584_p47 | hypothetical protein | phrog_1649 | metallo-phosphoesterase | other | 1 | 36604 | 37638 |
| YP_004538945.1 | NC_015584_p1 | hypothetical protein | phrog_7082 | unknown function | unknown function | 1 | 91 | 468 |
| YP_004539028.1 | NC_015584_p84 | hypothetical protein | phrog_1568 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 54918 | 55484 |