Genomic map of Pantoea phage LIMEzero (NC_015585)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_015585
Definition
Pantoea phage LIMEzero, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Autographiviridae; Waewaevirus.
DB of origin
REFSEQ
Length
43032
Host Name
Pantoea agglomerans
Host domain
Bacteria
Is prophage?
undef
Number of proteins
57
%GC
55.35
Number of singletons
18
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_004539119.1 NC_015585_p46 protein of an unannotated phage phrog_11393 tail fiber protein tail 1 34835 36274
YP_004539124.1 NC_015585_p51 protein of an unannotated phage phrog_9732 unknown function unknown function 1 40126 40578
YP_004539107.1 NC_015585_p34 protein of an unannotated phage singleton unknown function unknown function 1 20384 20575
YP_004539114.1 NC_015585_p41 protein of an unannotated phage phrog_446 tail protein tail 1 25258 25806
YP_004539100.1 NC_015585_p27 protein of an unannotated phage phrog_704 DNA repair exonuclease DNA, RNA and nucleotide metabolism 1 15326 16303
YP_004539089.1 NC_015585_p16 protein of an unannotated phage singleton unknown function unknown function 1 7087 7248
YP_004539130.1 NC_015585_p57 protein of an unannotated phage phrog_5335 unknown function unknown function 1 42457 43032
YP_004539082.1 NC_015585_p9 protein of an unannotated phage singleton unknown function unknown function 1 4720 5010
YP_004539075.1 NC_015585_p2 protein of an unannotated phage phrog_1448 unknown function unknown function 1 2355 2888
YP_004539083.1 NC_015585_p10 protein of an unannotated phage singleton unknown function unknown function 1 5077 5418
YP_004539126.1 NC_015585_p53 protein of an unannotated phage phrog_1804 Rz-like spanin lysis 1 40786 41352
YP_004539094.1 NC_015585_p21 protein of an unannotated phage phrog_11960 unknown function unknown function 1 9948 10139
YP_004539118.1 NC_015585_p45 protein of an unannotated phage phrog_342 internal virion protein with endolysin domain head and packaging 1 31740 34835
YP_004539077.1 NC_015585_p4 protein of an unannotated phage phrog_17459 unknown function unknown function 1 3019 3252
YP_004539128.1 NC_015585_p55 protein of an unannotated phage phrog_315 endolysin lysis 1 41707 42234
YP_004539086.1 NC_015585_p13 protein of an unannotated phage singleton unknown function unknown function 1 6049 6240
YP_004539102.1 NC_015585_p29 protein of an unannotated phage singleton unknown function unknown function 1 16446 16649
YP_004539105.1 NC_015585_p32 protein of an unannotated phage phrog_6060 anti-termination protein Q-like transcription regulation 1 17660 17896
YP_004539104.1 NC_015585_p31 protein of an unannotated phage phrog_5033 endolysin; inhibits RNA polymerase lysis 1 17136 17672
YP_004539110.1 NC_015585_p37 protein of an unannotated phage phrog_35536 virion structural protein head and packaging 1 21177 21440
YP_004539095.1 NC_015585_p22 protein of an unannotated phage phrog_1614 nucleotidyltransferase DNA, RNA and nucleotide metabolism 1 10162 10767
YP_004539103.1 NC_015585_p30 protein of an unannotated phage phrog_415 polynucleotide kinase other 1 16636 17139
YP_004539121.1 NC_015585_p48 protein of an unannotated phage singleton unknown function unknown function 1 36458 38053
YP_004539109.1 NC_015585_p36 protein of an unannotated phage phrog_3986 unknown function unknown function 1 20741 21193
YP_004539120.1 NC_015585_p47 protein of an unannotated phage singleton unknown function unknown function 1 36276 36458
YP_004539085.1 NC_015585_p12 protein of an unannotated phage singleton unknown function unknown function 1 5741 5989
YP_004539113.1 NC_015585_p40 protein of an unannotated phage phrog_267 major head protein head and packaging 1 24207 25193
YP_004539123.1 NC_015585_p50 protein of an unannotated phage phrog_38 terminase large subunit head and packaging 1 38360 40129
YP_004539093.1 NC_015585_p20 protein of an unannotated phage phrog_31596 unknown function unknown function 1 9767 9961
YP_004539112.1 NC_015585_p39 protein of an unannotated phage phrog_36307 head scaffolding protein head and packaging 1 23024 24187
YP_004539084.1 NC_015585_p11 protein of an unannotated phage singleton unknown function unknown function 1 5421 5732
YP_004539116.1 NC_015585_p43 protein of an unannotated phage phrog_4295 internal virion protein head and packaging 1 28232 29059
YP_004539101.1 NC_015585_p28 protein of an unannotated phage singleton unknown function unknown function 1 16300 16449
YP_004539088.1 NC_015585_p15 protein of an unannotated phage singleton unknown function unknown function 1 6603 7109
YP_004539092.1 NC_015585_p19 protein of an unannotated phage phrog_19629 unknown function unknown function 1 9317 9640
YP_004539091.1 NC_015585_p18 protein of an unannotated phage phrog_19 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism 1 8046 9317
YP_004539090.1 NC_015585_p17 protein of an unannotated phage phrog_8634 DNA primase DNA, RNA and nucleotide metabolism 1 7340 8044
YP_004539078.1 NC_015585_p5 protein of an unannotated phage phrog_17459 unknown function unknown function 1 3316 3567
YP_004539076.1 NC_015585_p3 protein of an unannotated phage singleton unknown function unknown function 1 2888 2956
YP_004539074.1 NC_015585_p1 protein of an unannotated phage phrog_2226 SAM-dependent methyltransferase other 1 1892 2302
YP_004539122.1 NC_015585_p49 protein of an unannotated phage phrog_891 terminase small subunit head and packaging 1 38055 38360
YP_004539087.1 NC_015585_p14 protein of an unannotated phage phrog_34944 unknown function unknown function 1 6314 6601
YP_004539099.1 NC_015585_p26 protein of an unannotated phage phrog_11865 endonuclease VII DNA, RNA and nucleotide metabolism 1 15033 15329
YP_004539098.1 NC_015585_p25 protein of an unannotated phage phrog_107 exonuclease DNA, RNA and nucleotide metabolism 1 14087 15028
YP_004539081.1 NC_015585_p8 protein of an unannotated phage singleton unknown function unknown function 1 4367 4654
YP_004539096.1 NC_015585_p23 protein of an unannotated phage phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism 1 10748 13192
YP_004539079.1 NC_015585_p6 protein of an unannotated phage phrog_32287 unknown function unknown function 1 3641 3922
YP_004539108.1 NC_015585_p35 protein of an unannotated phage singleton unknown function unknown function 1 20583 20744
YP_004539125.1 NC_015585_p52 protein of an unannotated phage singleton unknown function unknown function 1 40591 40776
YP_004539115.1 NC_015585_p42 protein of an unannotated phage phrog_457 tail protein tail 1 25806 28232
YP_004539111.1 NC_015585_p38 protein of an unannotated phage phrog_449 head-tail adaptor connector 1 21444 23012
YP_004539117.1 NC_015585_p44 protein of an unannotated phage phrog_2083 internal virion lysozyme motif head and packaging 1 29062 31743
YP_004539080.1 NC_015585_p7 protein of an unannotated phage singleton unknown function unknown function 1 3990 4295
YP_004539106.1 NC_015585_p33 protein of an unannotated phage phrog_414 RNA polymerase DNA, RNA and nucleotide metabolism 1 17896 20328
YP_004539127.1 NC_015585_p54 protein of an unannotated phage phrog_35530 unknown function unknown function 1 41387 41707
YP_004539129.1 NC_015585_p56 protein of an unannotated phage singleton unknown function unknown function 1 42242 42460
YP_004539097.1 NC_015585_p24 protein of an unannotated phage phrog_862 unknown function unknown function 1 13185 14045