| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_015585 |
Definition |
Pantoea phage LIMEzero, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Autographiviridae; Waewaevirus. |
DB of origin |
REFSEQ |
Length |
43032 |
Host Name |
Pantoea agglomerans |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
57 |
%GC |
55.35 |
Number of singletons |
18 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_004539119.1 | NC_015585_p46 | protein of an unannotated phage | phrog_11393 | tail fiber protein | tail | 1 | 34835 | 36274 |
| YP_004539124.1 | NC_015585_p51 | protein of an unannotated phage | phrog_9732 | unknown function | unknown function | 1 | 40126 | 40578 |
| YP_004539107.1 | NC_015585_p34 | protein of an unannotated phage | singleton | unknown function | unknown function | 1 | 20384 | 20575 |
| YP_004539114.1 | NC_015585_p41 | protein of an unannotated phage | phrog_446 | tail protein | tail | 1 | 25258 | 25806 |
| YP_004539100.1 | NC_015585_p27 | protein of an unannotated phage | phrog_704 | DNA repair exonuclease | DNA, RNA and nucleotide metabolism | 1 | 15326 | 16303 |
| YP_004539089.1 | NC_015585_p16 | protein of an unannotated phage | singleton | unknown function | unknown function | 1 | 7087 | 7248 |
| YP_004539130.1 | NC_015585_p57 | protein of an unannotated phage | phrog_5335 | unknown function | unknown function | 1 | 42457 | 43032 |
| YP_004539082.1 | NC_015585_p9 | protein of an unannotated phage | singleton | unknown function | unknown function | 1 | 4720 | 5010 |
| YP_004539075.1 | NC_015585_p2 | protein of an unannotated phage | phrog_1448 | unknown function | unknown function | 1 | 2355 | 2888 |
| YP_004539083.1 | NC_015585_p10 | protein of an unannotated phage | singleton | unknown function | unknown function | 1 | 5077 | 5418 |
| YP_004539126.1 | NC_015585_p53 | protein of an unannotated phage | phrog_1804 | Rz-like spanin | lysis | 1 | 40786 | 41352 |
| YP_004539094.1 | NC_015585_p21 | protein of an unannotated phage | phrog_11960 | unknown function | unknown function | 1 | 9948 | 10139 |
| YP_004539118.1 | NC_015585_p45 | protein of an unannotated phage | phrog_342 | internal virion protein with endolysin domain | head and packaging | 1 | 31740 | 34835 |
| YP_004539077.1 | NC_015585_p4 | protein of an unannotated phage | phrog_17459 | unknown function | unknown function | 1 | 3019 | 3252 |
| YP_004539128.1 | NC_015585_p55 | protein of an unannotated phage | phrog_315 | endolysin | lysis | 1 | 41707 | 42234 |
| YP_004539086.1 | NC_015585_p13 | protein of an unannotated phage | singleton | unknown function | unknown function | 1 | 6049 | 6240 |
| YP_004539102.1 | NC_015585_p29 | protein of an unannotated phage | singleton | unknown function | unknown function | 1 | 16446 | 16649 |
| YP_004539105.1 | NC_015585_p32 | protein of an unannotated phage | phrog_6060 | anti-termination protein Q-like | transcription regulation | 1 | 17660 | 17896 |
| YP_004539104.1 | NC_015585_p31 | protein of an unannotated phage | phrog_5033 | endolysin; inhibits RNA polymerase | lysis | 1 | 17136 | 17672 |
| YP_004539110.1 | NC_015585_p37 | protein of an unannotated phage | phrog_35536 | virion structural protein | head and packaging | 1 | 21177 | 21440 |
| YP_004539095.1 | NC_015585_p22 | protein of an unannotated phage | phrog_1614 | nucleotidyltransferase | DNA, RNA and nucleotide metabolism | 1 | 10162 | 10767 |
| YP_004539103.1 | NC_015585_p30 | protein of an unannotated phage | phrog_415 | polynucleotide kinase | other | 1 | 16636 | 17139 |
| YP_004539121.1 | NC_015585_p48 | protein of an unannotated phage | singleton | unknown function | unknown function | 1 | 36458 | 38053 |
| YP_004539109.1 | NC_015585_p36 | protein of an unannotated phage | phrog_3986 | unknown function | unknown function | 1 | 20741 | 21193 |
| YP_004539120.1 | NC_015585_p47 | protein of an unannotated phage | singleton | unknown function | unknown function | 1 | 36276 | 36458 |
| YP_004539085.1 | NC_015585_p12 | protein of an unannotated phage | singleton | unknown function | unknown function | 1 | 5741 | 5989 |
| YP_004539113.1 | NC_015585_p40 | protein of an unannotated phage | phrog_267 | major head protein | head and packaging | 1 | 24207 | 25193 |
| YP_004539123.1 | NC_015585_p50 | protein of an unannotated phage | phrog_38 | terminase large subunit | head and packaging | 1 | 38360 | 40129 |
| YP_004539093.1 | NC_015585_p20 | protein of an unannotated phage | phrog_31596 | unknown function | unknown function | 1 | 9767 | 9961 |
| YP_004539112.1 | NC_015585_p39 | protein of an unannotated phage | phrog_36307 | head scaffolding protein | head and packaging | 1 | 23024 | 24187 |
| YP_004539084.1 | NC_015585_p11 | protein of an unannotated phage | singleton | unknown function | unknown function | 1 | 5421 | 5732 |
| YP_004539116.1 | NC_015585_p43 | protein of an unannotated phage | phrog_4295 | internal virion protein | head and packaging | 1 | 28232 | 29059 |
| YP_004539101.1 | NC_015585_p28 | protein of an unannotated phage | singleton | unknown function | unknown function | 1 | 16300 | 16449 |
| YP_004539088.1 | NC_015585_p15 | protein of an unannotated phage | singleton | unknown function | unknown function | 1 | 6603 | 7109 |
| YP_004539092.1 | NC_015585_p19 | protein of an unannotated phage | phrog_19629 | unknown function | unknown function | 1 | 9317 | 9640 |
| YP_004539091.1 | NC_015585_p18 | protein of an unannotated phage | phrog_19 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | 1 | 8046 | 9317 |
| YP_004539090.1 | NC_015585_p17 | protein of an unannotated phage | phrog_8634 | DNA primase | DNA, RNA and nucleotide metabolism | 1 | 7340 | 8044 |
| YP_004539078.1 | NC_015585_p5 | protein of an unannotated phage | phrog_17459 | unknown function | unknown function | 1 | 3316 | 3567 |
| YP_004539076.1 | NC_015585_p3 | protein of an unannotated phage | singleton | unknown function | unknown function | 1 | 2888 | 2956 |
| YP_004539074.1 | NC_015585_p1 | protein of an unannotated phage | phrog_2226 | SAM-dependent methyltransferase | other | 1 | 1892 | 2302 |
| YP_004539122.1 | NC_015585_p49 | protein of an unannotated phage | phrog_891 | terminase small subunit | head and packaging | 1 | 38055 | 38360 |
| YP_004539087.1 | NC_015585_p14 | protein of an unannotated phage | phrog_34944 | unknown function | unknown function | 1 | 6314 | 6601 |
| YP_004539099.1 | NC_015585_p26 | protein of an unannotated phage | phrog_11865 | endonuclease VII | DNA, RNA and nucleotide metabolism | 1 | 15033 | 15329 |
| YP_004539098.1 | NC_015585_p25 | protein of an unannotated phage | phrog_107 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 14087 | 15028 |
| YP_004539081.1 | NC_015585_p8 | protein of an unannotated phage | singleton | unknown function | unknown function | 1 | 4367 | 4654 |
| YP_004539096.1 | NC_015585_p23 | protein of an unannotated phage | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 10748 | 13192 |
| YP_004539079.1 | NC_015585_p6 | protein of an unannotated phage | phrog_32287 | unknown function | unknown function | 1 | 3641 | 3922 |
| YP_004539108.1 | NC_015585_p35 | protein of an unannotated phage | singleton | unknown function | unknown function | 1 | 20583 | 20744 |
| YP_004539125.1 | NC_015585_p52 | protein of an unannotated phage | singleton | unknown function | unknown function | 1 | 40591 | 40776 |
| YP_004539115.1 | NC_015585_p42 | protein of an unannotated phage | phrog_457 | tail protein | tail | 1 | 25806 | 28232 |
| YP_004539111.1 | NC_015585_p38 | protein of an unannotated phage | phrog_449 | head-tail adaptor | connector | 1 | 21444 | 23012 |
| YP_004539117.1 | NC_015585_p44 | protein of an unannotated phage | phrog_2083 | internal virion lysozyme motif | head and packaging | 1 | 29062 | 31743 |
| YP_004539080.1 | NC_015585_p7 | protein of an unannotated phage | singleton | unknown function | unknown function | 1 | 3990 | 4295 |
| YP_004539106.1 | NC_015585_p33 | protein of an unannotated phage | phrog_414 | RNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 17896 | 20328 |
| YP_004539127.1 | NC_015585_p54 | protein of an unannotated phage | phrog_35530 | unknown function | unknown function | 1 | 41387 | 41707 |
| YP_004539129.1 | NC_015585_p56 | protein of an unannotated phage | singleton | unknown function | unknown function | 1 | 42242 | 42460 |
| YP_004539097.1 | NC_015585_p24 | protein of an unannotated phage | phrog_862 | unknown function | unknown function | 1 | 13185 | 14045 |