| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_015720 |
Definition |
Gordonia phage GTE2, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Emalynvirus; Gordonia virus GTE2. |
DB of origin |
REFSEQ |
Length |
45530 |
Host Name |
Gordonia terrae |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
57 |
%GC |
60.34 |
Number of singletons |
5 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_004678826.1 | NC_015720_p56 | hypothetical protein | phrog_26569 | unknown function | unknown function | 1 | 44683 | 45045 |
| YP_004678771.1 | NC_015720_p1 | hypothetical protein | phrog_226 | minor tail protein | tail | 1 | 59 | 535 |
| YP_004678827.1 | NC_015720_p57 | homing endonuclease | phrog_144 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 45128 | 45520 |
| YP_004678785.1 | NC_015720_p15 | tail protein | phrog_106 | minor tail protein | tail | 1 | 14148 | 15074 |
| YP_004678793.1 | NC_015720_p23 | tail fiber protein | phrog_21962 | tail protein | tail | 1 | 21320 | 22207 |
| YP_004678780.1 | NC_015720_p10 | hypothetical protein | phrog_123 | tail terminator | connector | 1 | 7243 | 7605 |
| YP_004678802.1 | NC_015720_p32 | hypothetical protein | singleton | unknown function | unknown function | -1 | 27555 | 28043 |
| YP_004678803.1 | NC_015720_p33 | hypothetical protein | phrog_1218 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 28416 | 29525 |
| YP_004678820.1 | NC_015720_p50 | hypothetical protein | phrog_19638 | unknown function | unknown function | 1 | 42721 | 43014 |
| YP_004678784.1 | NC_015720_p14 | tape measure protein | phrog_4197 | tail length tape measure protein | tail | 1 | 9463 | 14106 |
| YP_004678822.1 | NC_015720_p52 | hypothetical protein | phrog_16535 | unknown function | unknown function | 1 | 43208 | 43396 |
| YP_004678819.1 | NC_015720_p49 | hypothetical protein | singleton | unknown function | unknown function | 1 | 42155 | 42568 |
| YP_004678797.1 | NC_015720_p27 | hypothetical protein | phrog_18656 | unknown function | unknown function | -1 | 24316 | 24948 |
| YP_004678775.1 | NC_015720_p5 | hypothetical protein | phrog_1793 | head scaffolding protein | head and packaging | 1 | 4581 | 5042 |
| YP_004678814.1 | NC_015720_p44 | helicase | phrog_62 | DNA helicase | DNA, RNA and nucleotide metabolism | -1 | 36952 | 38337 |
| YP_004678790.1 | NC_015720_p20 | hypothetical protein | phrog_5552 | membrane protein | moron, auxiliary metabolic gene and host takeover | 1 | 19052 | 19540 |
| YP_004678789.1 | NC_015720_p19 | hypothetical protein | phrog_3084 | endolysin | lysis | 1 | 17772 | 18722 |
| YP_004678779.1 | NC_015720_p9 | hypothetical protein | phrog_387 | neck protein | connector | 1 | 6936 | 7208 |
| YP_004678809.1 | NC_015720_p39 | hypothetical protein | phrog_13667 | unknown function | unknown function | -1 | 34500 | 35393 |
| YP_004678810.1 | NC_015720_p40 | hypothetical protein | phrog_1581 | unknown function | unknown function | -1 | 35417 | 35662 |
| YP_004678788.1 | NC_015720_p18 | lysin | phrog_1512 | endolysin | lysis | 1 | 17225 | 17770 |
| YP_004678794.1 | NC_015720_p24 | hypothetical protein | phrog_356 | minor tail protein | tail | 1 | 22211 | 22849 |
| YP_004678824.1 | NC_015720_p54 | aminotransferase | singleton | unknown function | unknown function | -1 | 43818 | 44234 |
| YP_004678804.1 | NC_015720_p34 | hypothetical protein | phrog_38093 | unknown function | unknown function | -1 | 29443 | 29826 |
| YP_004678821.1 | NC_015720_p51 | hypothetical protein | phrog_26138 | unknown function | unknown function | 1 | 43011 | 43208 |
| YP_004678786.1 | NC_015720_p16 | tail protein | phrog_110 | minor tail protein | tail | 1 | 15173 | 16768 |
| YP_004678825.1 | NC_015720_p55 | ankyrin | phrog_19800 | unknown function | unknown function | 1 | 44385 | 44693 |
| YP_004678772.1 | NC_015720_p2 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 803 | 2482 |
| YP_004678817.1 | NC_015720_p47 | primase | phrog_3123 | unknown function | unknown function | 1 | 39509 | 41506 |
| YP_004678795.1 | NC_015720_p25 | hypothetical protein | phrog_5855 | unknown function | unknown function | -1 | 22928 | 23569 |
| YP_004678783.1 | NC_015720_p13 | hypothetical protein | singleton | unknown function | unknown function | 1 | 9054 | 9317 |
| YP_004678823.1 | NC_015720_p53 | hypothetical protein | phrog_16564 | unknown function | unknown function | 1 | 43397 | 43864 |
| YP_004678782.1 | NC_015720_p12 | hypothetical protein | phrog_8595 | tail assembly chaperone | tail | 1 | 8563 | 8856 |
| YP_004678811.1 | NC_015720_p41 | phage-encoded dCTP pyrophosphatase | phrog_12184 | nucleotide pyrophosphohydrolase | other | -1 | 35671 | 36027 |
| YP_004678773.1 | NC_015720_p3 | portal protein | phrog_104 | portal protein | head and packaging | 1 | 2503 | 3933 |
| YP_004678792.1 | NC_015720_p22 | hypothetical protein | phrog_7719 | minor tail protein | tail | 1 | 19853 | 20965 |
| YP_004678807.1 | NC_015720_p37 | cutinase | phrog_102 | endolysin | lysis | -1 | 32658 | 33497 |
| YP_004678777.1 | NC_015720_p7 | hypothetical protein | phrog_1290 | head-tail adaptor | connector | 1 | 6096 | 6605 |
| YP_004678799.1 | NC_015720_p29 | hypothetical protein | phrog_15118 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 26057 | 26449 |
| YP_004678818.1 | NC_015720_p48 | hypothetical protein | phrog_36245 | unknown function | unknown function | 1 | 41557 | 41940 |
| YP_004678805.1 | NC_015720_p35 | DNA polymerase I | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 29823 | 32210 |
| YP_004678808.1 | NC_015720_p38 | thymidylate synthase | phrog_160 | thymidylate synthase | DNA, RNA and nucleotide metabolism | -1 | 33637 | 34503 |
| YP_004678816.1 | NC_015720_p46 | hypothetical protein | phrog_13148 | unknown function | unknown function | -1 | 39038 | 39481 |
| YP_004678812.1 | NC_015720_p42 | guanylate kinase | phrog_761 | thymidylate kinase | other | -1 | 36126 | 36638 |
| YP_004678787.1 | NC_015720_p17 | hypothetical protein | phrog_8122 | minor tail protein | tail | 1 | 16788 | 17177 |
| YP_004678801.1 | NC_015720_p31 | hypothetical protein | phrog_14876 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 27012 | 27554 |
| YP_004678791.1 | NC_015720_p21 | hypothetical protein | phrog_20118 | unknown function | unknown function | 1 | 19545 | 19853 |
| YP_004678800.1 | NC_015720_p30 | VRR-NUC domain containing protein | phrog_93 | endonuclease | DNA, RNA and nucleotide metabolism | -1 | 26597 | 26884 |
| YP_004678776.1 | NC_015720_p6 | main capsid protein | phrog_10 | major head protein | head and packaging | 1 | 5063 | 6028 |
| YP_004678815.1 | NC_015720_p45 | hypothetical protein | singleton | unknown function | unknown function | -1 | 38633 | 38986 |
| YP_004678806.1 | NC_015720_p36 | deaminase | phrog_174 | dCMP deaminase | DNA, RNA and nucleotide metabolism | -1 | 32207 | 32665 |
| YP_004678798.1 | NC_015720_p28 | hypothetical protein | phrog_16498 | unknown function | unknown function | -1 | 25481 | 25921 |
| YP_004678813.1 | NC_015720_p43 | hypothetical protein | phrog_23484 | unknown function | unknown function | -1 | 36635 | 36955 |
| YP_004678796.1 | NC_015720_p26 | hypothetical protein | phrog_1006 | unknown function | unknown function | -1 | 23512 | 24090 |
| YP_004678781.1 | NC_015720_p11 | main tail protein | phrog_117 | major tail protein | tail | 1 | 7614 | 8459 |
| YP_004678774.1 | NC_015720_p4 | hypothetical protein | phrog_193 | head maturation protease | head and packaging | 1 | 3827 | 4531 |
| YP_004678778.1 | NC_015720_p8 | hypothetical protein | phrog_763 | head-tail adaptor | connector | 1 | 6602 | 6943 |