Genomic map of Synechococcus phage S-CBS1 (NC_016164)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_016164
Definition
Synechococcus phage S-CBS1, complete genome.
Molecule type
DNA
Genome structure
circular
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae.
DB of origin
REFSEQ
Length
30332
Host Name
Synechococcus sp.
Host domain
Bacteria
Is prophage?
undef
Number of proteins
43
%GC
58.74
Number of singletons
11
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_004934616.1 NC_016164_p16 hypothetical protein phrog_25799 unknown function unknown function 1 13941 14405
YP_004934629.1 NC_016164_p29 hypothetical protein singleton unknown function unknown function -1 22831 23097
YP_004934610.1 NC_016164_p10 fibre protein phrog_24754 tail fiber protein tail 1 9485 10093
YP_004934605.1 NC_016164_p5 hypothetical protein phrog_5707 unknown function unknown function 1 6942 7322
YP_004934638.1 NC_016164_p38 endodeoxyribonuclease RusA phrog_140 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism -1 26297 26719
YP_004934606.1 NC_016164_p6 hypothetical protein phrog_26903 unknown function unknown function 1 7416 7607
YP_004934642.1 NC_016164_p42 hypothetical protein singleton unknown function unknown function 1 29202 29417
YP_004934609.1 NC_016164_p9 hypothetical protein phrog_24448 unknown function unknown function 1 9066 9488
YP_004934607.1 NC_016164_p7 major tropism determinant phrog_11262 tail protein tail 1 7610 8671
YP_004934604.1 NC_016164_p4 major capsid protein phrog_617 major head protein head and packaging 1 4251 6761
YP_004934627.1 NC_016164_p27 group2 RNA polymerase sigma factor phrog_351 RNA polymerase sigma factor transcription regulation -1 20409 21299
YP_004934630.1 NC_016164_p30 hypothetical protein singleton unknown function unknown function -1 23090 23401
YP_004934612.1 NC_016164_p12 hypothetical protein phrog_290 minor tail protein tail 1 10567 11502
YP_004934633.1 NC_016164_p33 exonuclease VIII phrog_412 exonuclease VIII DNA, RNA and nucleotide metabolism -1 24365 25153
YP_004934624.1 NC_016164_p24 lysozyme phrog_10051 endolysin lysis 1 18856 19977
YP_004934611.1 NC_016164_p11 hypothetical protein phrog_4204 tail terminator connector 1 10093 10521
YP_004934621.1 NC_016164_p21 hypothetical protein phrog_26178 unknown function unknown function 1 18230 18475
YP_004934631.1 NC_016164_p31 hypothetical protein singleton unknown function unknown function -1 23401 23697
YP_004934626.1 NC_016164_p26 hypothetical protein singleton unknown function unknown function 1 20163 20408
YP_004934618.1 NC_016164_p18 hypothetical protein phrog_15525 minor tail protein tail 1 16762 17130
YP_004934620.1 NC_016164_p20 fibre protein phrog_31660 tail fiber protein tail 1 17648 18196
YP_004934608.1 NC_016164_p8 hypothetical protein phrog_30757 unknown function unknown function 1 8815 9066
YP_004934622.1 NC_016164_p22 hypothetical protein phrog_22542 unknown function unknown function 1 18496 18654
YP_004934617.1 NC_016164_p17 hypothetical protein phrog_27845 tail protein tail 1 14402 16759
YP_004934643.1 NC_016164_p43 hypothetical protein phrog_1924 minor tail protein tail 1 29513 30199
YP_004934639.1 NC_016164_p39 hypothetical protein singleton unknown function unknown function 1 26806 27231
YP_004934635.1 NC_016164_p35 hypothetical protein phrog_22131 unknown function unknown function -1 25386 25562
YP_004934602.1 NC_016164_p2 phage-like protein phrog_5774 head-tail joining connector 1 2174 2740
YP_004934619.1 NC_016164_p19 hypothetical protein phrog_15525 minor tail protein tail 1 17127 17651
YP_004934615.1 NC_016164_p15 tail tape measure protein phrog_3981 tail length tape measure protein tail 1 12208 13941
YP_004934632.1 NC_016164_p32 hypothetical protein phrog_21418 unknown function unknown function -1 23700 24368
YP_004934613.1 NC_016164_p13 hypothetical protein phrog_569 tail length tape measure protein tail 1 11563 11886
YP_004934601.1 NC_016164_p1 large terminase subunit phrog_15 terminase large subunit head and packaging 1 261 2144
YP_004934614.1 NC_016164_p14 hypothetical protein phrog_680 tail length tape measure protein tail 1 11952 12215
YP_004934641.1 NC_016164_p41 hypothetical protein phrog_30286 unknown function unknown function 1 27450 29186
YP_004934623.1 NC_016164_p23 hypothetical protein singleton unknown function unknown function 1 18675 18887
YP_004934634.1 NC_016164_p34 hypothetical protein singleton unknown function unknown function -1 25157 25408
YP_004934636.1 NC_016164_p36 hypothetical protein singleton unknown function unknown function 1 25664 25786
YP_004934640.1 NC_016164_p40 hypothetical protein singleton unknown function unknown function -1 27305 27451
YP_004934628.1 NC_016164_p28 hypothetical protein phrog_284 exonuclease DNA, RNA and nucleotide metabolism -1 21660 22811
YP_004934637.1 NC_016164_p37 hypothetical protein singleton unknown function unknown function -1 25871 26068
YP_004934625.1 NC_016164_p25 hypothetical protein phrog_36325 unknown function unknown function -1 19974 20129
YP_004934603.1 NC_016164_p3 lambda-like phage portal protein phrog_21 portal protein head and packaging 1 2740 4251