| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_016165 |
Definition |
Rhodobacter phage RcapMu, complete genome. |
Molecule type |
DNA |
Genome structure |
circular |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae. |
DB of origin |
REFSEQ |
Length |
39283 |
Host Name |
Rhodobacter capsulatus |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
58 |
%GC |
64.89 |
Number of singletons |
17 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_004934659.1 | NC_016165_p16 | transposition protein B | phrog_296 | DNA transposition protein | integration and excision | 1 | 8285 | 9058 |
| YP_004934644.1 | NC_016165_p1 | hypothetical protein | singleton | unknown function | unknown function | 1 | 50 | 184 |
| YP_004934663.1 | NC_016165_p20 | hypothetical protein | singleton | unknown function | unknown function | 1 | 10530 | 10763 |
| YP_004934666.1 | NC_016165_p23 | hypothetical protein | singleton | unknown function | unknown function | 1 | 12089 | 12304 |
| YP_004934648.1 | NC_016165_p5 | hypothetical protein | singleton | unknown function | unknown function | -1 | 1888 | 2268 |
| YP_004934654.1 | NC_016165_p11 | hypothetical protein | phrog_13335 | unknown function | unknown function | 1 | 4144 | 4434 |
| YP_004934696.1 | NC_016165_p53 | hypothetical protein | phrog_396 | minor tail protein | tail | 1 | 32132 | 32659 |
| YP_004934667.1 | NC_016165_p24 | GemA-like protein | phrog_286 | unknown function | unknown function | 1 | 12301 | 12747 |
| YP_004934672.1 | NC_016165_p29 | hypothetical protein | phrog_873 | endolysin | head and packaging | 1 | 14946 | 15458 |
| YP_004934678.1 | NC_016165_p35 | hypothetical protein | singleton | unknown function | unknown function | 1 | 18350 | 18574 |
| YP_004934661.1 | NC_016165_p18 | LacI-like regulatory protein | phrog_2119 | unknown function | unknown function | 1 | 9636 | 10001 |
| YP_004934652.1 | NC_016165_p9 | hypothetical protein | singleton | unknown function | unknown function | 1 | 3888 | 4022 |
| YP_004934660.1 | NC_016165_p17 | TroR domain transcriptional regulator | phrog_2030 | transcriptional regulator | transcription regulation | 1 | 9088 | 9645 |
| YP_004934683.1 | NC_016165_p40 | scaffolding protein | singleton | unknown function | unknown function | 1 | 23096 | 23551 |
| YP_004934686.1 | NC_016165_p43 | hypothetical protein | singleton | unknown function | unknown function | 1 | 24937 | 25425 |
| YP_004934658.1 | NC_016165_p15 | transposase A | phrog_310 | transposase | integration and excision | 1 | 5964 | 8252 |
| YP_004934695.1 | NC_016165_p52 | hypothetical protein | phrog_384 | virion structural protein | head and packaging | 1 | 31713 | 32135 |
| YP_004934685.1 | NC_016165_p42 | major capsid protein | phrog_1005 | major head protein | head and packaging | 1 | 23919 | 24872 |
| YP_004934698.1 | NC_016165_p55 | tail fiber protein | phrog_31 | central tail fiber J | tail | 1 | 33099 | 36527 |
| YP_004934665.1 | NC_016165_p22 | hypothetical protein | phrog_23215 | unknown function | unknown function | 1 | 11208 | 12092 |
| YP_004934668.1 | NC_016165_p25 | hypothetical protein | singleton | unknown function | unknown function | 1 | 12744 | 12851 |
| YP_004934699.1 | NC_016165_p56 | tail spike protein | phrog_38452 | tail protein | tail | 1 | 36554 | 37885 |
| YP_004934679.1 | NC_016165_p36 | portal protein | phrog_113 | portal protein | head and packaging | 1 | 18571 | 19947 |
| YP_004934653.1 | NC_016165_p10 | hypothetical protein | singleton | unknown function | unknown function | 1 | 4022 | 4147 |
| YP_004934688.1 | NC_016165_p45 | hypothetical protein | phrog_195 | head-tail adaptor | connector | 1 | 25786 | 26211 |
| YP_004934692.1 | NC_016165_p49 | hypothetical protein | phrog_569 | tail length tape measure protein | tail | 1 | 27904 | 28281 |
| YP_004934690.1 | NC_016165_p47 | hypothetical protein | singleton | unknown function | unknown function | 1 | 26645 | 26842 |
| YP_004934664.1 | NC_016165_p21 | DNA-binding protein HU | phrog_379 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 10856 | 11131 |
| YP_004934676.1 | NC_016165_p33 | hypothetical protein | singleton | unknown function | unknown function | 1 | 17866 | 18015 |
| YP_004934646.1 | NC_016165_p3 | hypothetical protein | singleton | unknown function | unknown function | -1 | 708 | 1397 |
| YP_004934674.1 | NC_016165_p31 | DNA-binding protein | phrog_756 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 15708 | 16211 |
| YP_004934662.1 | NC_016165_p19 | host-nuclease inhibitor Gam | phrog_491 | Mu Gam-like end protection | DNA, RNA and nucleotide metabolism | 1 | 9988 | 10530 |
| YP_004934681.1 | NC_016165_p38 | virion morphogenesis protein | phrog_26 | tail completion or Neck1 protein | connector | 1 | 21617 | 22171 |
| YP_004934700.1 | NC_016165_p57 | hypothetical protein | phrog_12296 | tail fiber protein | tail | 1 | 37916 | 38182 |
| YP_004934670.1 | NC_016165_p27 | transcriptional regulator | phrog_836 | late transcriptional activator | transcription regulation | 1 | 13577 | 13945 |
| YP_004934682.1 | NC_016165_p39 | protease | phrog_976 | head maturation protease | head and packaging | 1 | 22439 | 23551 |
| YP_004934687.1 | NC_016165_p44 | hypothetical protein | phrog_717 | unknown function | unknown function | 1 | 25496 | 25786 |
| YP_004934655.1 | NC_016165_p12 | hypothetical protein | singleton | unknown function | unknown function | 1 | 4434 | 4625 |
| YP_004934697.1 | NC_016165_p54 | tail assembly protein | phrog_329 | minor tail protein | tail | 1 | 32662 | 33102 |
| YP_004934671.1 | NC_016165_p28 | lysozyme | phrog_7 | endolysin | lysis | 1 | 14017 | 14946 |
| YP_004934651.1 | NC_016165_p8 | hypothetical protein | singleton | unknown function | unknown function | 1 | 3581 | 3898 |
| YP_004934701.1 | NC_016165_p58 | tail fiber protein | phrog_5939 | tail protein | tail | 1 | 38182 | 39162 |
| YP_004934673.1 | NC_016165_p30 | hypothetical protein | phrog_1193 | hemolysin | other | 1 | 15455 | 15721 |
| YP_004934675.1 | NC_016165_p32 | large terminase | phrog_38 | terminase large subunit | head and packaging | 1 | 16208 | 17866 |
| YP_004934647.1 | NC_016165_p4 | hypothetical protein | phrog_16123 | unknown function | unknown function | -1 | 1400 | 1876 |
| YP_004934656.1 | NC_016165_p13 | ParB-like nuclease | phrog_3264 | ParB-like partition protein | DNA, RNA and nucleotide metabolism | 1 | 4635 | 5486 |
| YP_004934649.1 | NC_016165_p6 | c-repressor | phrog_4 | transcriptional repressor | transcription regulation | -1 | 2430 | 3146 |
| YP_004934669.1 | NC_016165_p26 | conserved transposable phage protein | phrog_421 | unknown function | unknown function | 1 | 12851 | 13528 |
| YP_004934677.1 | NC_016165_p34 | hypothetical protein | phrog_3362 | unknown function | unknown function | 1 | 18015 | 18353 |
| YP_004934650.1 | NC_016165_p7 | ner-like transcriptional regulator | phrog_769 | transcriptional repressor | transcription regulation | 1 | 3291 | 3584 |
| YP_004934694.1 | NC_016165_p51 | tape measure protein | phrog_19487 | tail length tape measure protein | tail | 1 | 28633 | 31716 |
| YP_004934680.1 | NC_016165_p37 | head morphogenesis protein | phrog_220 | minor head protein and DNA pilot | head and packaging | 1 | 20043 | 21524 |
| YP_004934657.1 | NC_016165_p14 | conserved transposable prophage protein | phrog_2345 | transcriptional regulator | transcription regulation | 1 | 5488 | 5955 |
| YP_004934684.1 | NC_016165_p41 | hypothetical protein | phrog_673 | head scaffolding protein | head and packaging | 1 | 23564 | 23908 |
| YP_004934689.1 | NC_016165_p46 | hypothetical protein | singleton | unknown function | unknown function | 1 | 26211 | 26642 |
| YP_004934645.1 | NC_016165_p2 | hypothetical protein | singleton | unknown function | unknown function | -1 | 511 | 711 |
| YP_004934693.1 | NC_016165_p50 | hypothetical protein | phrog_680 | tail length tape measure protein | tail | 1 | 28344 | 28631 |
| YP_004934691.1 | NC_016165_p48 | hypothetical protein | phrog_290 | minor tail protein | tail | 1 | 26845 | 27771 |