Genomic map of Rhodobacter phage RcapMu (NC_016165)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_016165
Definition
Rhodobacter phage RcapMu, complete genome.
Molecule type
DNA
Genome structure
circular
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae.
DB of origin
REFSEQ
Length
39283
Host Name
Rhodobacter capsulatus
Host domain
Bacteria
Is prophage?
undef
Number of proteins
58
%GC
64.89
Number of singletons
17
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_004934659.1 NC_016165_p16 transposition protein B phrog_296 DNA transposition protein integration and excision 1 8285 9058
YP_004934644.1 NC_016165_p1 hypothetical protein singleton unknown function unknown function 1 50 184
YP_004934663.1 NC_016165_p20 hypothetical protein singleton unknown function unknown function 1 10530 10763
YP_004934666.1 NC_016165_p23 hypothetical protein singleton unknown function unknown function 1 12089 12304
YP_004934648.1 NC_016165_p5 hypothetical protein singleton unknown function unknown function -1 1888 2268
YP_004934654.1 NC_016165_p11 hypothetical protein phrog_13335 unknown function unknown function 1 4144 4434
YP_004934696.1 NC_016165_p53 hypothetical protein phrog_396 minor tail protein tail 1 32132 32659
YP_004934667.1 NC_016165_p24 GemA-like protein phrog_286 unknown function unknown function 1 12301 12747
YP_004934672.1 NC_016165_p29 hypothetical protein phrog_873 endolysin head and packaging 1 14946 15458
YP_004934678.1 NC_016165_p35 hypothetical protein singleton unknown function unknown function 1 18350 18574
YP_004934661.1 NC_016165_p18 LacI-like regulatory protein phrog_2119 unknown function unknown function 1 9636 10001
YP_004934652.1 NC_016165_p9 hypothetical protein singleton unknown function unknown function 1 3888 4022
YP_004934660.1 NC_016165_p17 TroR domain transcriptional regulator phrog_2030 transcriptional regulator transcription regulation 1 9088 9645
YP_004934683.1 NC_016165_p40 scaffolding protein singleton unknown function unknown function 1 23096 23551
YP_004934686.1 NC_016165_p43 hypothetical protein singleton unknown function unknown function 1 24937 25425
YP_004934658.1 NC_016165_p15 transposase A phrog_310 transposase integration and excision 1 5964 8252
YP_004934695.1 NC_016165_p52 hypothetical protein phrog_384 virion structural protein head and packaging 1 31713 32135
YP_004934685.1 NC_016165_p42 major capsid protein phrog_1005 major head protein head and packaging 1 23919 24872
YP_004934698.1 NC_016165_p55 tail fiber protein phrog_31 central tail fiber J tail 1 33099 36527
YP_004934665.1 NC_016165_p22 hypothetical protein phrog_23215 unknown function unknown function 1 11208 12092
YP_004934668.1 NC_016165_p25 hypothetical protein singleton unknown function unknown function 1 12744 12851
YP_004934699.1 NC_016165_p56 tail spike protein phrog_38452 tail protein tail 1 36554 37885
YP_004934679.1 NC_016165_p36 portal protein phrog_113 portal protein head and packaging 1 18571 19947
YP_004934653.1 NC_016165_p10 hypothetical protein singleton unknown function unknown function 1 4022 4147
YP_004934688.1 NC_016165_p45 hypothetical protein phrog_195 head-tail adaptor connector 1 25786 26211
YP_004934692.1 NC_016165_p49 hypothetical protein phrog_569 tail length tape measure protein tail 1 27904 28281
YP_004934690.1 NC_016165_p47 hypothetical protein singleton unknown function unknown function 1 26645 26842
YP_004934664.1 NC_016165_p21 DNA-binding protein HU phrog_379 DNA binding protein DNA, RNA and nucleotide metabolism 1 10856 11131
YP_004934676.1 NC_016165_p33 hypothetical protein singleton unknown function unknown function 1 17866 18015
YP_004934646.1 NC_016165_p3 hypothetical protein singleton unknown function unknown function -1 708 1397
YP_004934674.1 NC_016165_p31 DNA-binding protein phrog_756 DNA binding protein DNA, RNA and nucleotide metabolism 1 15708 16211
YP_004934662.1 NC_016165_p19 host-nuclease inhibitor Gam phrog_491 Mu Gam-like end protection DNA, RNA and nucleotide metabolism 1 9988 10530
YP_004934681.1 NC_016165_p38 virion morphogenesis protein phrog_26 tail completion or Neck1 protein connector 1 21617 22171
YP_004934700.1 NC_016165_p57 hypothetical protein phrog_12296 tail fiber protein tail 1 37916 38182
YP_004934670.1 NC_016165_p27 transcriptional regulator phrog_836 late transcriptional activator transcription regulation 1 13577 13945
YP_004934682.1 NC_016165_p39 protease phrog_976 head maturation protease head and packaging 1 22439 23551
YP_004934687.1 NC_016165_p44 hypothetical protein phrog_717 unknown function unknown function 1 25496 25786
YP_004934655.1 NC_016165_p12 hypothetical protein singleton unknown function unknown function 1 4434 4625
YP_004934697.1 NC_016165_p54 tail assembly protein phrog_329 minor tail protein tail 1 32662 33102
YP_004934671.1 NC_016165_p28 lysozyme phrog_7 endolysin lysis 1 14017 14946
YP_004934651.1 NC_016165_p8 hypothetical protein singleton unknown function unknown function 1 3581 3898
YP_004934701.1 NC_016165_p58 tail fiber protein phrog_5939 tail protein tail 1 38182 39162
YP_004934673.1 NC_016165_p30 hypothetical protein phrog_1193 hemolysin other 1 15455 15721
YP_004934675.1 NC_016165_p32 large terminase phrog_38 terminase large subunit head and packaging 1 16208 17866
YP_004934647.1 NC_016165_p4 hypothetical protein phrog_16123 unknown function unknown function -1 1400 1876
YP_004934656.1 NC_016165_p13 ParB-like nuclease phrog_3264 ParB-like partition protein DNA, RNA and nucleotide metabolism 1 4635 5486
YP_004934649.1 NC_016165_p6 c-repressor phrog_4 transcriptional repressor transcription regulation -1 2430 3146
YP_004934669.1 NC_016165_p26 conserved transposable phage protein phrog_421 unknown function unknown function 1 12851 13528
YP_004934677.1 NC_016165_p34 hypothetical protein phrog_3362 unknown function unknown function 1 18015 18353
YP_004934650.1 NC_016165_p7 ner-like transcriptional regulator phrog_769 transcriptional repressor transcription regulation 1 3291 3584
YP_004934694.1 NC_016165_p51 tape measure protein phrog_19487 tail length tape measure protein tail 1 28633 31716
YP_004934680.1 NC_016165_p37 head morphogenesis protein phrog_220 minor head protein and DNA pilot head and packaging 1 20043 21524
YP_004934657.1 NC_016165_p14 conserved transposable prophage protein phrog_2345 transcriptional regulator transcription regulation 1 5488 5955
YP_004934684.1 NC_016165_p41 hypothetical protein phrog_673 head scaffolding protein head and packaging 1 23564 23908
YP_004934689.1 NC_016165_p46 hypothetical protein singleton unknown function unknown function 1 26211 26642
YP_004934645.1 NC_016165_p2 hypothetical protein singleton unknown function unknown function -1 511 711
YP_004934693.1 NC_016165_p50 hypothetical protein phrog_680 tail length tape measure protein tail 1 28344 28631
YP_004934691.1 NC_016165_p48 hypothetical protein phrog_290 minor tail protein tail 1 26845 27771