| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_016434 |
Definition |
Gordonia phage GTE5, complete genome. |
Molecule type |
DNA |
Genome structure |
circular |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae. |
DB of origin |
REFSEQ |
Length |
65839 |
Host Name |
Gordonia terrae |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
92 |
%GC |
65.05 |
Number of singletons |
7 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_004935755.1 | NC_016434_p24 | hypothetical protein | phrog_12236 | head-tail connector protein | connector | 1 | 14770 | 15120 |
| YP_004935782.1 | NC_016434_p51 | hypothetical protein | phrog_13496 | thioredoxin domain | DNA, RNA and nucleotide metabolism | -1 | 42754 | 43260 |
| YP_004935742.1 | NC_016434_p11 | hypothetical protein | phrog_21562 | tail protein | tail | 1 | 3460 | 5433 |
| YP_004935809.1 | NC_016434_p78 | hypothetical protein | phrog_13451 | unknown function | unknown function | 1 | 58002 | 58256 |
| YP_004935778.1 | NC_016434_p47 | hypothetical protein | phrog_1981 | unknown function | unknown function | -1 | 38190 | 38936 |
| YP_004935748.1 | NC_016434_p17 | head protein | phrog_1522 | head maturation protease | head and packaging | 1 | 9843 | 11228 |
| YP_004935789.1 | NC_016434_p58 | hypothetical protein | phrog_3848 | unknown function | unknown function | -1 | 47281 | 47643 |
| YP_004935751.1 | NC_016434_p20 | main capsid protein | phrog_29 | major head protein | head and packaging | 1 | 12384 | 13445 |
| YP_004935743.1 | NC_016434_p12 | hypothetical protein | phrog_13218 | unknown function | unknown function | 1 | 5454 | 5636 |
| YP_004935790.1 | NC_016434_p59 | helicase | phrog_62 | DNA helicase | DNA, RNA and nucleotide metabolism | -1 | 47640 | 49067 |
| YP_004935759.1 | NC_016434_p28 | tail assembly protein | phrog_2624 | tail assembly chaperone | tail | 1 | 16818 | 17117 |
| YP_004935759.1 | NC_016434_p28 | tail assembly protein | phrog_2624 | tail assembly chaperone | tail | 1 | 17117 | 17629 |
| YP_004935802.1 | NC_016434_p71 | hypothetical protein | phrog_16405 | membrane protein | moron, auxiliary metabolic gene and host takeover | 1 | 54889 | 55575 |
| YP_004935814.1 | NC_016434_p83 | hypothetical protein | phrog_14603 | unknown function | unknown function | 1 | 61428 | 61838 |
| YP_004935787.1 | NC_016434_p56 | hypothetical protein | phrog_13499 | unknown function | unknown function | -1 | 46735 | 47070 |
| YP_004935818.1 | NC_016434_p87 | hypothetical protein | phrog_1374 | unknown function | unknown function | 1 | 63789 | 63998 |
| YP_004935781.1 | NC_016434_p50 | hypothetical protein | phrog_7933 | unknown function | unknown function | -1 | 42533 | 42757 |
| YP_004935758.1 | NC_016434_p27 | hypothetical protein | phrog_14117 | virion structural protein | head and packaging | 1 | 16432 | 16794 |
| YP_004935776.1 | NC_016434_p45 | hypothetical protein | phrog_13050 | unknown function | unknown function | -1 | 37433 | 37696 |
| YP_004935771.1 | NC_016434_p40 | holin | phrog_3428 | holin | lysis | 1 | 32933 | 33247 |
| YP_004935783.1 | NC_016434_p52 | hypothetical protein | phrog_13965 | unknown function | unknown function | -1 | 43333 | 44217 |
| YP_004935797.1 | NC_016434_p66 | hypothetical protein | singleton | unknown function | unknown function | 1 | 52567 | 52851 |
| YP_004935747.1 | NC_016434_p16 | portal protein | phrog_104 | portal protein | head and packaging | 1 | 8269 | 9846 |
| YP_004935779.1 | NC_016434_p48 | DNA polymerase III alpha subunit | phrog_405 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 38933 | 42214 |
| YP_004935812.1 | NC_016434_p81 | hypothetical protein | singleton | unknown function | unknown function | 1 | 59675 | 59950 |
| YP_004935757.1 | NC_016434_p26 | main tail protein | phrog_476 | major tail protein | tail | 1 | 15663 | 16346 |
| YP_004935760.1 | NC_016434_p29 | tape measure protein | phrog_6090 | tail length tape measure protein | tail | 1 | 17717 | 23122 |
| YP_004935820.1 | NC_016434_p89 | hypothetical protein | phrog_25654 | unknown function | unknown function | 1 | 64633 | 64908 |
| YP_004935763.1 | NC_016434_p32 | minor tail protein | phrog_4120 | minor tail protein | tail | 1 | 25695 | 26804 |
| YP_004935765.1 | NC_016434_p34 | carbohydrate binding domain protein | phrog_8373 | unknown function | unknown function | 1 | 29375 | 29539 |
| YP_004935804.1 | NC_016434_p73 | hypothetical protein | phrog_18547 | unknown function | unknown function | 1 | 56009 | 56578 |
| YP_004935739.1 | NC_016434_p8 | hypothetical protein | phrog_14439 | unknown function | unknown function | 1 | 2149 | 2331 |
| YP_004935805.1 | NC_016434_p74 | hypothetical protein | phrog_15206 | unknown function | unknown function | 1 | 56575 | 56742 |
| YP_004935806.1 | NC_016434_p75 | hypothetical protein | phrog_20867 | unknown function | unknown function | 1 | 56739 | 57425 |
| YP_004935800.1 | NC_016434_p69 | hypothetical protein | phrog_10850 | unknown function | unknown function | 1 | 53879 | 54112 |
| YP_004935801.1 | NC_016434_p70 | hypothetical protein | phrog_15177 | unknown function | unknown function | 1 | 54128 | 54859 |
| YP_004935746.1 | NC_016434_p15 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 6550 | 8226 |
| YP_004935816.1 | NC_016434_p85 | hypothetical protein | phrog_13626 | unknown function | unknown function | 1 | 63211 | 63474 |
| YP_004935786.1 | NC_016434_p55 | hypothetical protein | phrog_4160 | unknown function | unknown function | -1 | 46242 | 46745 |
| YP_004935745.1 | NC_016434_p14 | terminase small subunit | phrog_7785 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 6100 | 6531 |
| YP_004935768.1 | NC_016434_p37 | hypothetical protein | phrog_240 | head protein | head and packaging | 1 | 30882 | 31223 |
| YP_004935819.1 | NC_016434_p88 | hypothetical protein | phrog_14019 | unknown function | unknown function | 1 | 63995 | 64636 |
| YP_004935791.1 | NC_016434_p60 | transcriptional regulator | phrog_14304 | transcriptional regulator WhiB-like | transcription regulation | -1 | 49526 | 50149 |
| YP_004935753.1 | NC_016434_p22 | hypothetical protein | phrog_137 | head-tail adaptor Ad1 | connector | 1 | 13921 | 14376 |
| YP_004935798.1 | NC_016434_p67 | hypothetical protein | singleton | unknown function | unknown function | 1 | 52937 | 53458 |
| YP_004935796.1 | NC_016434_p65 | hypothetical protein | phrog_12059 | unknown function | unknown function | -1 | 51349 | 52365 |
| YP_004935762.1 | NC_016434_p31 | minor tail protein | phrog_110 | minor tail protein | tail | 1 | 24044 | 25663 |
| YP_004935741.1 | NC_016434_p10 | hypothetical protein | phrog_6439 | unknown function | unknown function | 1 | 3209 | 3460 |
| YP_004935764.1 | NC_016434_p33 | hypothetical protein | phrog_746 | minor tail protein | tail | 1 | 26806 | 29361 |
| YP_004935807.1 | NC_016434_p76 | hypothetical protein | phrog_20357 | unknown function | unknown function | 1 | 57468 | 57581 |
| YP_004935785.1 | NC_016434_p54 | hypothetical protein | phrog_1218 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 45064 | 46020 |
| YP_004935744.1 | NC_016434_p13 | hypothetical protein | phrog_18398 | unknown function | unknown function | 1 | 5633 | 6103 |
| YP_004935734.1 | NC_016434_p3 | hypothetical protein | phrog_12539 | unknown function | unknown function | 1 | 748 | 1053 |
| YP_004935777.1 | NC_016434_p46 | DNA binding excisionase protein | phrog_1729 | unknown function | unknown function | -1 | 37711 | 38169 |
| YP_004935737.1 | NC_016434_p6 | hypothetical protein | phrog_13455 | unknown function | unknown function | 1 | 1516 | 1779 |
| YP_004935803.1 | NC_016434_p72 | hypothetical protein | phrog_35654 | unknown function | unknown function | 1 | 55650 | 55928 |
| YP_004935808.1 | NC_016434_p77 | hypothetical protein | phrog_26507 | unknown function | unknown function | 1 | 57674 | 57952 |
| YP_004935733.1 | NC_016434_p2 | hypothetical protein | phrog_15936 | membrane protein | moron, auxiliary metabolic gene and host takeover | 1 | 305 | 751 |
| YP_004935754.1 | NC_016434_p23 | hypothetical protein | phrog_12740 | head closure Hc1 | connector | 1 | 14376 | 14780 |
| YP_004935749.1 | NC_016434_p18 | hypothetical protein | phrog_12880 | head scaffolding protein | head and packaging | 1 | 11225 | 11905 |
| YP_004935821.1 | NC_016434_p90 | hypothetical protein | phrog_2089 | unknown function | unknown function | 1 | 64905 | 65159 |
| YP_004935767.1 | NC_016434_p36 | hypothetical protein | phrog_6030 | unknown function | unknown function | 1 | 30576 | 30878 |
| YP_004935822.1 | NC_016434_p91 | hypothetical protein | phrog_13327 | unknown function | unknown function | 1 | 65218 | 65568 |
| YP_004935792.1 | NC_016434_p61 | hypothetical protein | phrog_10718 | unknown function | unknown function | -1 | 50146 | 50310 |
| YP_004935736.1 | NC_016434_p5 | hypothetical protein | phrog_15162 | membrane protein | moron, auxiliary metabolic gene and host takeover | 1 | 1421 | 1519 |
| YP_004935773.1 | NC_016434_p42 | hypothetical protein | phrog_726 | unknown function | unknown function | 1 | 33736 | 34173 |
| YP_004935774.1 | NC_016434_p43 | primase | phrog_1156 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 34156 | 36717 |
| YP_004935761.1 | NC_016434_p30 | minor tail protein | phrog_106 | minor tail protein | tail | 1 | 23122 | 24039 |
| YP_004935817.1 | NC_016434_p86 | hypothetical protein | phrog_20759 | unknown function | unknown function | 1 | 63462 | 63755 |
| YP_004935769.1 | NC_016434_p38 | lysis protein | phrog_6007 | endolysin | lysis | 1 | 31282 | 31914 |
| YP_004935735.1 | NC_016434_p4 | hypothetical protein | phrog_13444 | unknown function | unknown function | 1 | 1050 | 1424 |
| YP_004935766.1 | NC_016434_p35 | hypothetical protein | phrog_416 | minor tail protein | tail | 1 | 29539 | 30600 |
| YP_004935810.1 | NC_016434_p79 | hypothetical protein | singleton | unknown function | unknown function | 1 | 58260 | 58574 |
| YP_004935788.1 | NC_016434_p57 | hypothetical protein | phrog_14384 | unknown function | unknown function | -1 | 47108 | 47230 |
| YP_004935732.1 | NC_016434_p1 | hypothetical protein | phrog_23039 | unknown function | unknown function | 1 | 55 | 249 |
| YP_004935793.1 | NC_016434_p62 | hypothetical protein | phrog_14499 | membrane protein | moron, auxiliary metabolic gene and host takeover | -1 | 50351 | 50458 |
| YP_004935770.1 | NC_016434_p39 | lysis protein | phrog_9506 | endolysin | lysis | 1 | 31911 | 32936 |
| YP_004935794.1 | NC_016434_p63 | hypothetical protein | phrog_5392 | unknown function | unknown function | -1 | 50473 | 50838 |
| YP_004935795.1 | NC_016434_p64 | hypothetical protein | phrog_14599 | unknown function | unknown function | -1 | 50872 | 51345 |
| YP_004935811.1 | NC_016434_p80 | hypothetical protein | singleton | unknown function | unknown function | 1 | 59143 | 59442 |
| YP_004935740.1 | NC_016434_p9 | hypothetical protein | phrog_102 | endolysin | lysis | 1 | 2331 | 3101 |
| YP_004935756.1 | NC_016434_p25 | hypothetical protein | phrog_123 | tail terminator | connector | 1 | 15117 | 15632 |
| YP_004935752.1 | NC_016434_p21 | hypothetical protein | phrog_6587 | head-tail connector protein | connector | 1 | 13447 | 13881 |
| YP_004935780.1 | NC_016434_p49 | hypothetical protein | singleton | unknown function | unknown function | -1 | 42217 | 42459 |
| YP_004935823.1 | NC_016434_p92 | hypothetical protein | singleton | unknown function | unknown function | 1 | 65525 | 65704 |
| YP_004935815.1 | NC_016434_p84 | hypothetical protein | phrog_20553 | unknown function | unknown function | 1 | 61835 | 63214 |
| YP_004935784.1 | NC_016434_p53 | hypothetical protein | phrog_124 | Sak4-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | -1 | 44234 | 45013 |
| YP_004935775.1 | NC_016434_p44 | hypothetical protein | phrog_14298 | unknown function | unknown function | -1 | 36719 | 37126 |
| YP_004935738.1 | NC_016434_p7 | hypothetical protein | phrog_16183 | unknown function | unknown function | 1 | 1785 | 2138 |
| YP_004935750.1 | NC_016434_p19 | hypothetical protein | phrog_3583 | head decoration | head and packaging | 1 | 11921 | 12340 |
| YP_004935772.1 | NC_016434_p41 | hypothetical protein | phrog_1298 | minor tail protein | tail | 1 | 33174 | 33761 |
| YP_004935799.1 | NC_016434_p68 | hypothetical protein | phrog_13959 | unknown function | unknown function | 1 | 53451 | 53867 |
| YP_004935813.1 | NC_016434_p82 | hypothetical protein | phrog_226 | minor tail protein | tail | 1 | 60179 | 60772 |