| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_016435 |
Definition |
Gordonia phage GRU1, complete genome. |
Molecule type |
DNA |
Genome structure |
circular |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae. |
DB of origin |
REFSEQ |
Length |
65766 |
Host Name |
Gordonia rubropertincta |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
94 |
%GC |
65.47 |
Number of singletons |
5 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_004935838.1 | NC_016435_p15 | portal protein | phrog_104 | portal protein | head and packaging | 1 | 7260 | 8837 |
| YP_004935830.1 | NC_016435_p7 | hypothetical protein | phrog_16183 | unknown function | unknown function | 1 | 1781 | 2137 |
| YP_004935834.1 | NC_016435_p11 | hypothetical protein | phrog_21562 | tail protein | tail | 1 | 3453 | 4427 |
| YP_004935863.1 | NC_016435_p40 | hypothetical protein | phrog_726 | unknown function | unknown function | 1 | 32426 | 32848 |
| YP_004935864.1 | NC_016435_p41 | primase | phrog_1156 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 32845 | 35406 |
| YP_004935859.1 | NC_016435_p36 | lysis enzyme | phrog_6007 | endolysin | lysis | 1 | 29972 | 30604 |
| YP_004935850.1 | NC_016435_p27 | tail assembly protein | phrog_2624 | tail assembly chaperone | tail | 1 | 15854 | 16153 |
| YP_004935850.1 | NC_016435_p27 | tail assembly protein | phrog_2624 | tail assembly chaperone | tail | 1 | 16153 | 16665 |
| YP_004935912.1 | NC_016435_p89 | hypothetical protein | phrog_14019 | unknown function | unknown function | 1 | 63100 | 63744 |
| YP_004935888.1 | NC_016435_p65 | hypothetical protein | phrog_14599 | unknown function | unknown function | -1 | 50133 | 50606 |
| YP_004935842.1 | NC_016435_p19 | hypothetical protein | phrog_29 | major head protein | head and packaging | 1 | 11381 | 12442 |
| YP_004935855.1 | NC_016435_p32 | hypothetical protein | phrog_346 | minor tail protein | tail | 1 | 25851 | 28217 |
| YP_004935881.1 | NC_016435_p58 | hypothetical protein | phrog_3848 | unknown function | unknown function | -1 | 46095 | 46466 |
| YP_004935874.1 | NC_016435_p51 | hypothetical protein | phrog_13496 | thioredoxin domain | DNA, RNA and nucleotide metabolism | -1 | 41728 | 42234 |
| YP_004935851.1 | NC_016435_p28 | tape measure protein | phrog_6090 | tail length tape measure protein | tail | 1 | 16753 | 22167 |
| YP_004935916.1 | NC_016435_p93 | hypothetical protein | phrog_3032 | unknown function | unknown function | 1 | 64725 | 65153 |
| YP_004935836.1 | NC_016435_p13 | terminase small subunit | phrog_7785 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 5091 | 5522 |
| YP_004935899.1 | NC_016435_p76 | hypothetical protein | phrog_20867 | unknown function | unknown function | 1 | 55846 | 56415 |
| YP_004935857.1 | NC_016435_p34 | hypothetical protein | phrog_6030 | unknown function | unknown function | 1 | 29266 | 29568 |
| YP_004935889.1 | NC_016435_p66 | hypothetical protein | phrog_12059 | unknown function | unknown function | -1 | 50610 | 51605 |
| YP_004935824.1 | NC_016435_p1 | hypothetical protein | phrog_23039 | unknown function | unknown function | 1 | 57 | 251 |
| YP_004935843.1 | NC_016435_p20 | hypothetical protein | phrog_6587 | head-tail connector protein | connector | 1 | 12444 | 12878 |
| YP_004935913.1 | NC_016435_p90 | hypothetical protein | phrog_25654 | unknown function | unknown function | 1 | 63741 | 64019 |
| YP_004935854.1 | NC_016435_p31 | phage tail protein | phrog_4120 | minor tail protein | tail | 1 | 24740 | 25849 |
| YP_004935867.1 | NC_016435_p44 | hypothetical protein | phrog_13050 | unknown function | unknown function | -1 | 36123 | 36404 |
| YP_004935880.1 | NC_016435_p57 | hypothetical protein | phrog_14384 | unknown function | unknown function | -1 | 45922 | 46044 |
| YP_004935887.1 | NC_016435_p64 | hypothetical protein | phrog_34223 | unknown function | unknown function | -1 | 49825 | 50136 |
| YP_004935875.1 | NC_016435_p52 | hypothetical protein | phrog_13965 | unknown function | unknown function | -1 | 42307 | 43185 |
| YP_004935877.1 | NC_016435_p54 | hypothetical protein | phrog_1218 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 44032 | 45213 |
| YP_004935903.1 | NC_016435_p80 | hypothetical protein | phrog_13451 | unknown function | unknown function | 1 | 57721 | 57981 |
| YP_004935840.1 | NC_016435_p17 | hypothetical protein | phrog_12880 | head scaffolding protein | head and packaging | 1 | 10216 | 10902 |
| YP_004935853.1 | NC_016435_p30 | hypothetical protein | phrog_110 | minor tail protein | tail | 1 | 23089 | 24708 |
| YP_004935835.1 | NC_016435_p12 | hypothetical protein | phrog_18398 | unknown function | unknown function | 1 | 4519 | 5094 |
| YP_004935895.1 | NC_016435_p72 | hypothetical protein | phrog_16405 | membrane protein | moron, auxiliary metabolic gene and host takeover | 1 | 53998 | 54684 |
| YP_004935908.1 | NC_016435_p85 | hypothetical protein | phrog_20553 | unknown function | unknown function | 1 | 60814 | 62319 |
| YP_004935856.1 | NC_016435_p33 | hypothetical protein | phrog_416 | minor tail protein | tail | 1 | 28214 | 29290 |
| YP_004935896.1 | NC_016435_p73 | hypothetical protein | phrog_35654 | unknown function | unknown function | 1 | 54758 | 55036 |
| YP_004935905.1 | NC_016435_p82 | hypothetical protein | singleton | unknown function | unknown function | 1 | 58462 | 58641 |
| YP_004935870.1 | NC_016435_p47 | hypothetical protein | phrog_16741 | unknown function | unknown function | -1 | 37626 | 37859 |
| YP_004935886.1 | NC_016435_p63 | hypothetical protein | phrog_14499 | membrane protein | moron, auxiliary metabolic gene and host takeover | -1 | 49703 | 49828 |
| YP_004935833.1 | NC_016435_p10 | hypothetical protein | phrog_6439 | unknown function | unknown function | 1 | 3205 | 3453 |
| YP_004935904.1 | NC_016435_p81 | hypothetical protein | phrog_37222 | unknown function | unknown function | 1 | 57978 | 58253 |
| YP_004935900.1 | NC_016435_p77 | hypothetical protein | phrog_37324 | unknown function | unknown function | 1 | 56508 | 57080 |
| YP_004935862.1 | NC_016435_p39 | hypothetical protein | phrog_1298 | minor tail protein | tail | 1 | 31942 | 32451 |
| YP_004935828.1 | NC_016435_p5 | hypothetical protein | phrog_15162 | membrane protein | moron, auxiliary metabolic gene and host takeover | 1 | 1420 | 1518 |
| YP_004935897.1 | NC_016435_p74 | hypothetical protein | phrog_18547 | unknown function | unknown function | 1 | 55116 | 55685 |
| YP_004935915.1 | NC_016435_p92 | hypothetical protein | phrog_1371 | unknown function | unknown function | 1 | 64270 | 64728 |
| YP_004935827.1 | NC_016435_p4 | hypothetical protein | phrog_13444 | unknown function | unknown function | 1 | 1049 | 1423 |
| YP_004935882.1 | NC_016435_p59 | hypothetical protein | phrog_17100 | unknown function | unknown function | -1 | 46463 | 46810 |
| YP_004935829.1 | NC_016435_p6 | hypothetical protein | phrog_13455 | unknown function | unknown function | 1 | 1515 | 1778 |
| YP_004935858.1 | NC_016435_p35 | hypothetical protein | phrog_240 | head protein | head and packaging | 1 | 29572 | 29913 |
| YP_004935825.1 | NC_016435_p2 | hypothetical protein | phrog_15936 | membrane protein | moron, auxiliary metabolic gene and host takeover | 1 | 307 | 750 |
| YP_004935844.1 | NC_016435_p21 | hypothetical protein | phrog_137 | head-tail adaptor Ad1 | connector | 1 | 12918 | 13373 |
| YP_004935907.1 | NC_016435_p84 | hypothetical protein | phrog_14603 | unknown function | unknown function | 1 | 60407 | 60817 |
| YP_004935872.1 | NC_016435_p49 | hypothetical protein | singleton | unknown function | unknown function | 1 | 41111 | 41476 |
| YP_004935865.1 | NC_016435_p42 | hypothetical protein | phrog_14298 | unknown function | unknown function | -1 | 35403 | 35816 |
| YP_004935866.1 | NC_016435_p43 | hypothetical protein | singleton | unknown function | unknown function | 1 | 35809 | 36102 |
| YP_004935906.1 | NC_016435_p83 | hypothetical protein | phrog_226 | minor tail protein | tail | 1 | 59190 | 59753 |
| YP_004935868.1 | NC_016435_p45 | DNA binding excisionase protein | phrog_1729 | unknown function | unknown function | -1 | 36401 | 36859 |
| YP_004935892.1 | NC_016435_p69 | hypothetical protein | phrog_13959 | unknown function | unknown function | 1 | 52559 | 52966 |
| YP_004935873.1 | NC_016435_p50 | hypothetical protein | phrog_7933 | unknown function | unknown function | -1 | 41507 | 41731 |
| YP_004935914.1 | NC_016435_p91 | hypothetical protein | phrog_2089 | unknown function | unknown function | 1 | 64016 | 64270 |
| YP_004935917.1 | NC_016435_p94 | hypothetical protein | phrog_13327 | unknown function | unknown function | 1 | 65150 | 65509 |
| YP_004935841.1 | NC_016435_p18 | hypothetical protein | phrog_3583 | head decoration | head and packaging | 1 | 10918 | 11337 |
| YP_004935911.1 | NC_016435_p88 | hypothetical protein | phrog_1374 | unknown function | unknown function | 1 | 62882 | 63103 |
| YP_004935878.1 | NC_016435_p55 | hypothetical protein | phrog_17235 | unknown function | unknown function | -1 | 45203 | 45547 |
| YP_004935890.1 | NC_016435_p67 | hypothetical protein | singleton | unknown function | unknown function | 1 | 51728 | 51877 |
| YP_004935852.1 | NC_016435_p29 | hypothetical protein | phrog_106 | minor tail protein | tail | 1 | 22167 | 23084 |
| YP_004935860.1 | NC_016435_p37 | lysis enzyme | phrog_9506 | endolysin | lysis | 1 | 30601 | 31626 |
| YP_004935831.1 | NC_016435_p8 | hypothetical protein | phrog_14439 | unknown function | unknown function | 1 | 2148 | 2330 |
| YP_004935832.1 | NC_016435_p9 | hypothetical protein | phrog_102 | endolysin | lysis | 1 | 2330 | 3097 |
| YP_004935879.1 | NC_016435_p56 | hypothetical protein | phrog_13499 | unknown function | unknown function | -1 | 45540 | 45884 |
| YP_004935901.1 | NC_016435_p78 | hypothetical protein | phrog_20357 | unknown function | unknown function | 1 | 57203 | 57316 |
| YP_004935869.1 | NC_016435_p46 | hypothetical protein | phrog_1981 | unknown function | unknown function | -1 | 36880 | 37626 |
| YP_004935871.1 | NC_016435_p48 | DNA polymerase III alpha subunit | phrog_405 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 37856 | 41041 |
| YP_004935883.1 | NC_016435_p60 | helicase | phrog_62 | DNA helicase | DNA, RNA and nucleotide metabolism | -1 | 46807 | 48864 |
| YP_004935826.1 | NC_016435_p3 | hypothetical protein | phrog_12539 | unknown function | unknown function | 1 | 747 | 1052 |
| YP_004935893.1 | NC_016435_p70 | hypothetical protein | phrog_10850 | unknown function | unknown function | 1 | 52978 | 53211 |
| YP_004935909.1 | NC_016435_p86 | hypothetical protein | phrog_13626 | unknown function | unknown function | 1 | 62358 | 62579 |
| YP_004935898.1 | NC_016435_p75 | hypothetical protein | phrog_15206 | unknown function | unknown function | 1 | 55682 | 55849 |
| YP_004935861.1 | NC_016435_p38 | holin | phrog_3428 | holin | lysis | 1 | 31623 | 31937 |
| YP_004935894.1 | NC_016435_p71 | hypothetical protein | phrog_15177 | unknown function | unknown function | 1 | 53237 | 53968 |
| YP_004935885.1 | NC_016435_p62 | hypothetical protein | singleton | unknown function | unknown function | 1 | 49534 | 49665 |
| YP_004935845.1 | NC_016435_p22 | hypothetical protein | phrog_12740 | head closure Hc1 | connector | 1 | 13373 | 13777 |
| YP_004935848.1 | NC_016435_p25 | main tail protein | phrog_476 | major tail protein | tail | 1 | 14660 | 15343 |
| YP_004935910.1 | NC_016435_p87 | hypothetical protein | phrog_20759 | unknown function | unknown function | 1 | 62576 | 62860 |
| YP_004935846.1 | NC_016435_p23 | hypothetical protein | phrog_12236 | head-tail connector protein | connector | 1 | 13767 | 14117 |
| YP_004935884.1 | NC_016435_p61 | hypothetical protein | phrog_10718 | unknown function | unknown function | -1 | 49313 | 49477 |
| YP_004935891.1 | NC_016435_p68 | hypothetical protein | phrog_12365 | unknown function | unknown function | 1 | 52084 | 52557 |
| YP_004935876.1 | NC_016435_p53 | hypothetical protein | phrog_124 | Sak4-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | -1 | 43202 | 43981 |
| YP_004935847.1 | NC_016435_p24 | hypothetical protein | phrog_123 | tail terminator | connector | 1 | 14114 | 14629 |
| YP_004935849.1 | NC_016435_p26 | hypothetical protein | phrog_14117 | virion structural protein | head and packaging | 1 | 15429 | 15830 |
| YP_004935839.1 | NC_016435_p16 | head protein | phrog_1522 | head maturation protease | head and packaging | 1 | 8834 | 10219 |
| YP_004935902.1 | NC_016435_p79 | hypothetical protein | phrog_26507 | unknown function | unknown function | 1 | 57406 | 57675 |
| YP_004935837.1 | NC_016435_p14 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 5541 | 7217 |