Genomic map of Gordonia phage GRU1 (NC_016435)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_016435
Definition
Gordonia phage GRU1, complete genome.
Molecule type
DNA
Genome structure
circular
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae.
DB of origin
REFSEQ
Length
65766
Host Name
Gordonia rubropertincta
Host domain
Bacteria
Is prophage?
undef
Number of proteins
94
%GC
65.47
Number of singletons
5
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_004935838.1 NC_016435_p15 portal protein phrog_104 portal protein head and packaging 1 7260 8837
YP_004935830.1 NC_016435_p7 hypothetical protein phrog_16183 unknown function unknown function 1 1781 2137
YP_004935834.1 NC_016435_p11 hypothetical protein phrog_21562 tail protein tail 1 3453 4427
YP_004935863.1 NC_016435_p40 hypothetical protein phrog_726 unknown function unknown function 1 32426 32848
YP_004935864.1 NC_016435_p41 primase phrog_1156 DNA primase DNA, RNA and nucleotide metabolism -1 32845 35406
YP_004935859.1 NC_016435_p36 lysis enzyme phrog_6007 endolysin lysis 1 29972 30604
YP_004935850.1 NC_016435_p27 tail assembly protein phrog_2624 tail assembly chaperone tail 1 15854 16153
YP_004935850.1 NC_016435_p27 tail assembly protein phrog_2624 tail assembly chaperone tail 1 16153 16665
YP_004935912.1 NC_016435_p89 hypothetical protein phrog_14019 unknown function unknown function 1 63100 63744
YP_004935888.1 NC_016435_p65 hypothetical protein phrog_14599 unknown function unknown function -1 50133 50606
YP_004935842.1 NC_016435_p19 hypothetical protein phrog_29 major head protein head and packaging 1 11381 12442
YP_004935855.1 NC_016435_p32 hypothetical protein phrog_346 minor tail protein tail 1 25851 28217
YP_004935881.1 NC_016435_p58 hypothetical protein phrog_3848 unknown function unknown function -1 46095 46466
YP_004935874.1 NC_016435_p51 hypothetical protein phrog_13496 thioredoxin domain DNA, RNA and nucleotide metabolism -1 41728 42234
YP_004935851.1 NC_016435_p28 tape measure protein phrog_6090 tail length tape measure protein tail 1 16753 22167
YP_004935916.1 NC_016435_p93 hypothetical protein phrog_3032 unknown function unknown function 1 64725 65153
YP_004935836.1 NC_016435_p13 terminase small subunit phrog_7785 HNH endonuclease DNA, RNA and nucleotide metabolism 1 5091 5522
YP_004935899.1 NC_016435_p76 hypothetical protein phrog_20867 unknown function unknown function 1 55846 56415
YP_004935857.1 NC_016435_p34 hypothetical protein phrog_6030 unknown function unknown function 1 29266 29568
YP_004935889.1 NC_016435_p66 hypothetical protein phrog_12059 unknown function unknown function -1 50610 51605
YP_004935824.1 NC_016435_p1 hypothetical protein phrog_23039 unknown function unknown function 1 57 251
YP_004935843.1 NC_016435_p20 hypothetical protein phrog_6587 head-tail connector protein connector 1 12444 12878
YP_004935913.1 NC_016435_p90 hypothetical protein phrog_25654 unknown function unknown function 1 63741 64019
YP_004935854.1 NC_016435_p31 phage tail protein phrog_4120 minor tail protein tail 1 24740 25849
YP_004935867.1 NC_016435_p44 hypothetical protein phrog_13050 unknown function unknown function -1 36123 36404
YP_004935880.1 NC_016435_p57 hypothetical protein phrog_14384 unknown function unknown function -1 45922 46044
YP_004935887.1 NC_016435_p64 hypothetical protein phrog_34223 unknown function unknown function -1 49825 50136
YP_004935875.1 NC_016435_p52 hypothetical protein phrog_13965 unknown function unknown function -1 42307 43185
YP_004935877.1 NC_016435_p54 hypothetical protein phrog_1218 exonuclease DNA, RNA and nucleotide metabolism -1 44032 45213
YP_004935903.1 NC_016435_p80 hypothetical protein phrog_13451 unknown function unknown function 1 57721 57981
YP_004935840.1 NC_016435_p17 hypothetical protein phrog_12880 head scaffolding protein head and packaging 1 10216 10902
YP_004935853.1 NC_016435_p30 hypothetical protein phrog_110 minor tail protein tail 1 23089 24708
YP_004935835.1 NC_016435_p12 hypothetical protein phrog_18398 unknown function unknown function 1 4519 5094
YP_004935895.1 NC_016435_p72 hypothetical protein phrog_16405 membrane protein moron, auxiliary metabolic gene and host takeover 1 53998 54684
YP_004935908.1 NC_016435_p85 hypothetical protein phrog_20553 unknown function unknown function 1 60814 62319
YP_004935856.1 NC_016435_p33 hypothetical protein phrog_416 minor tail protein tail 1 28214 29290
YP_004935896.1 NC_016435_p73 hypothetical protein phrog_35654 unknown function unknown function 1 54758 55036
YP_004935905.1 NC_016435_p82 hypothetical protein singleton unknown function unknown function 1 58462 58641
YP_004935870.1 NC_016435_p47 hypothetical protein phrog_16741 unknown function unknown function -1 37626 37859
YP_004935886.1 NC_016435_p63 hypothetical protein phrog_14499 membrane protein moron, auxiliary metabolic gene and host takeover -1 49703 49828
YP_004935833.1 NC_016435_p10 hypothetical protein phrog_6439 unknown function unknown function 1 3205 3453
YP_004935904.1 NC_016435_p81 hypothetical protein phrog_37222 unknown function unknown function 1 57978 58253
YP_004935900.1 NC_016435_p77 hypothetical protein phrog_37324 unknown function unknown function 1 56508 57080
YP_004935862.1 NC_016435_p39 hypothetical protein phrog_1298 minor tail protein tail 1 31942 32451
YP_004935828.1 NC_016435_p5 hypothetical protein phrog_15162 membrane protein moron, auxiliary metabolic gene and host takeover 1 1420 1518
YP_004935897.1 NC_016435_p74 hypothetical protein phrog_18547 unknown function unknown function 1 55116 55685
YP_004935915.1 NC_016435_p92 hypothetical protein phrog_1371 unknown function unknown function 1 64270 64728
YP_004935827.1 NC_016435_p4 hypothetical protein phrog_13444 unknown function unknown function 1 1049 1423
YP_004935882.1 NC_016435_p59 hypothetical protein phrog_17100 unknown function unknown function -1 46463 46810
YP_004935829.1 NC_016435_p6 hypothetical protein phrog_13455 unknown function unknown function 1 1515 1778
YP_004935858.1 NC_016435_p35 hypothetical protein phrog_240 head protein head and packaging 1 29572 29913
YP_004935825.1 NC_016435_p2 hypothetical protein phrog_15936 membrane protein moron, auxiliary metabolic gene and host takeover 1 307 750
YP_004935844.1 NC_016435_p21 hypothetical protein phrog_137 head-tail adaptor Ad1 connector 1 12918 13373
YP_004935907.1 NC_016435_p84 hypothetical protein phrog_14603 unknown function unknown function 1 60407 60817
YP_004935872.1 NC_016435_p49 hypothetical protein singleton unknown function unknown function 1 41111 41476
YP_004935865.1 NC_016435_p42 hypothetical protein phrog_14298 unknown function unknown function -1 35403 35816
YP_004935866.1 NC_016435_p43 hypothetical protein singleton unknown function unknown function 1 35809 36102
YP_004935906.1 NC_016435_p83 hypothetical protein phrog_226 minor tail protein tail 1 59190 59753
YP_004935868.1 NC_016435_p45 DNA binding excisionase protein phrog_1729 unknown function unknown function -1 36401 36859
YP_004935892.1 NC_016435_p69 hypothetical protein phrog_13959 unknown function unknown function 1 52559 52966
YP_004935873.1 NC_016435_p50 hypothetical protein phrog_7933 unknown function unknown function -1 41507 41731
YP_004935914.1 NC_016435_p91 hypothetical protein phrog_2089 unknown function unknown function 1 64016 64270
YP_004935917.1 NC_016435_p94 hypothetical protein phrog_13327 unknown function unknown function 1 65150 65509
YP_004935841.1 NC_016435_p18 hypothetical protein phrog_3583 head decoration head and packaging 1 10918 11337
YP_004935911.1 NC_016435_p88 hypothetical protein phrog_1374 unknown function unknown function 1 62882 63103
YP_004935878.1 NC_016435_p55 hypothetical protein phrog_17235 unknown function unknown function -1 45203 45547
YP_004935890.1 NC_016435_p67 hypothetical protein singleton unknown function unknown function 1 51728 51877
YP_004935852.1 NC_016435_p29 hypothetical protein phrog_106 minor tail protein tail 1 22167 23084
YP_004935860.1 NC_016435_p37 lysis enzyme phrog_9506 endolysin lysis 1 30601 31626
YP_004935831.1 NC_016435_p8 hypothetical protein phrog_14439 unknown function unknown function 1 2148 2330
YP_004935832.1 NC_016435_p9 hypothetical protein phrog_102 endolysin lysis 1 2330 3097
YP_004935879.1 NC_016435_p56 hypothetical protein phrog_13499 unknown function unknown function -1 45540 45884
YP_004935901.1 NC_016435_p78 hypothetical protein phrog_20357 unknown function unknown function 1 57203 57316
YP_004935869.1 NC_016435_p46 hypothetical protein phrog_1981 unknown function unknown function -1 36880 37626
YP_004935871.1 NC_016435_p48 DNA polymerase III alpha subunit phrog_405 DNA polymerase DNA, RNA and nucleotide metabolism -1 37856 41041
YP_004935883.1 NC_016435_p60 helicase phrog_62 DNA helicase DNA, RNA and nucleotide metabolism -1 46807 48864
YP_004935826.1 NC_016435_p3 hypothetical protein phrog_12539 unknown function unknown function 1 747 1052
YP_004935893.1 NC_016435_p70 hypothetical protein phrog_10850 unknown function unknown function 1 52978 53211
YP_004935909.1 NC_016435_p86 hypothetical protein phrog_13626 unknown function unknown function 1 62358 62579
YP_004935898.1 NC_016435_p75 hypothetical protein phrog_15206 unknown function unknown function 1 55682 55849
YP_004935861.1 NC_016435_p38 holin phrog_3428 holin lysis 1 31623 31937
YP_004935894.1 NC_016435_p71 hypothetical protein phrog_15177 unknown function unknown function 1 53237 53968
YP_004935885.1 NC_016435_p62 hypothetical protein singleton unknown function unknown function 1 49534 49665
YP_004935845.1 NC_016435_p22 hypothetical protein phrog_12740 head closure Hc1 connector 1 13373 13777
YP_004935848.1 NC_016435_p25 main tail protein phrog_476 major tail protein tail 1 14660 15343
YP_004935910.1 NC_016435_p87 hypothetical protein phrog_20759 unknown function unknown function 1 62576 62860
YP_004935846.1 NC_016435_p23 hypothetical protein phrog_12236 head-tail connector protein connector 1 13767 14117
YP_004935884.1 NC_016435_p61 hypothetical protein phrog_10718 unknown function unknown function -1 49313 49477
YP_004935891.1 NC_016435_p68 hypothetical protein phrog_12365 unknown function unknown function 1 52084 52557
YP_004935876.1 NC_016435_p53 hypothetical protein phrog_124 Sak4-like ssDNA annealing protein DNA, RNA and nucleotide metabolism -1 43202 43981
YP_004935847.1 NC_016435_p24 hypothetical protein phrog_123 tail terminator connector 1 14114 14629
YP_004935849.1 NC_016435_p26 hypothetical protein phrog_14117 virion structural protein head and packaging 1 15429 15830
YP_004935839.1 NC_016435_p16 head protein phrog_1522 head maturation protease head and packaging 1 8834 10219
YP_004935902.1 NC_016435_p79 hypothetical protein phrog_26507 unknown function unknown function 1 57406 57675
YP_004935837.1 NC_016435_p14 terminase large subunit phrog_9 terminase large subunit head and packaging 1 5541 7217