Genomic map of Planktothrix phage PaV-LD (NC_016564)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_016564
Definition
Planktothrix phage PaV-LD, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae.
DB of origin
REFSEQ
Length
95299
Host Name
Planktothrix agardhii
Host domain
Bacteria
Is prophage?
undef
Number of proteins
142
%GC
41.44
Number of singletons
94
Number of paralogs
7

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_004957312.1 NC_016564_p39 hypothetical protein singleton unknown function unknown function -1 22536 22751
YP_004957374.1 NC_016564_p101 hypothetical protein singleton unknown function unknown function -1 73068 73325
YP_004957324.1 NC_016564_p51 hypothetical protein singleton unknown function unknown function -1 30722 31066
YP_004957354.1 NC_016564_p81 virion structural protein phrog_33618 unknown function unknown function 1 56721 57875
YP_004957403.1 NC_016564_p130 hypothetical protein singleton unknown function unknown function -1 89983 90486
YP_004957335.1 NC_016564_p62 hypothetical protein phrog_16619 minor head protein head and packaging 1 40907 41488
YP_004957358.1 NC_016564_p85 minor virion protein phrog_16619 minor head protein head and packaging 1 59123 60205
YP_004957331.1 NC_016564_p58 hypothetical protein phrog_35535 unknown function unknown function 1 37571 37993
YP_004957397.1 NC_016564_p124 hypothetical protein singleton unknown function unknown function -1 85979 86341
YP_004957379.1 NC_016564_p106 hypothetical protein singleton unknown function unknown function -1 75293 75637
YP_004957362.1 NC_016564_p89 hypothetical protein singleton unknown function unknown function -1 66461 66916
YP_004957407.1 NC_016564_p134 hypothetical protein singleton unknown function unknown function -1 92279 92404
YP_004957382.1 NC_016564_p109 hypothetical protein singleton unknown function unknown function 1 76344 76709
YP_004957343.1 NC_016564_p70 hypothetical protein singleton unknown function unknown function -1 46847 47221
YP_004957309.1 NC_016564_p36 protein phosphatase phrog_17277 unknown function unknown function 1 20071 21201
YP_004957378.1 NC_016564_p105 hypothetical protein phrog_129 transcriptional regulator transcription regulation -1 74659 75186
YP_004957355.1 NC_016564_p82 hypothetical protein singleton unknown function unknown function 1 57877 58152
YP_004957315.1 NC_016564_p42 hypothetical protein singleton unknown function unknown function -1 23609 23944
YP_004957410.1 NC_016564_p137 hypothetical protein singleton unknown function unknown function -1 93047 93346
YP_004957287.1 NC_016564_p14 hypothetical protein singleton unknown function unknown function 1 8993 9295
YP_004957348.1 NC_016564_p75 hypothetical protein phrog_302 virion structural protein head and packaging 1 51170 51505
YP_004957291.1 NC_016564_p18 integrase phrog_1 integrase integration and excision 1 10405 11538
YP_004957302.1 NC_016564_p29 hypothetical protein phrog_8769 methyltransferase other -1 16783 17160
YP_004957276.1 NC_016564_p3 hypothetical protein singleton unknown function unknown function -1 919 1302
YP_004957326.1 NC_016564_p53 terminase large subunit phrog_2 terminase large subunit head and packaging -1 31517 33121
YP_004957395.1 NC_016564_p122 hypothetical protein phrog_315 endolysin lysis -1 84775 85386
YP_004957303.1 NC_016564_p30 hypothetical protein singleton unknown function unknown function -1 17318 17536
YP_004957350.1 NC_016564_p77 hypothetical protein phrog_27999 unknown function unknown function 1 51684 52103
YP_004957310.1 NC_016564_p37 protein kinase phrog_2361 serine-threonine kinase other 1 21207 22025
YP_004957327.1 NC_016564_p54 hypothetical protein phrog_23655 unknown function unknown function -1 33229 33879
YP_004957325.1 NC_016564_p52 hypothetical protein singleton unknown function unknown function 1 31098 31514
YP_004957280.1 NC_016564_p7 replicative DNA helicase phrog_19 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism 1 3659 5398
YP_004957339.1 NC_016564_p66 hypothetical protein phrog_16619 minor head protein head and packaging 1 45091 45603
YP_004957383.1 NC_016564_p110 hypothetical protein singleton unknown function unknown function 1 76723 77202
YP_004957406.1 NC_016564_p133 hypothetical protein singleton unknown function unknown function -1 91711 92043
YP_004957323.1 NC_016564_p50 hypothetical protein singleton unknown function unknown function -1 30348 30689
YP_004957305.1 NC_016564_p32 acetyltransferase phrog_1249 acetyltransferase other -1 17897 18490
YP_004957356.1 NC_016564_p83 hypothetical protein singleton unknown function unknown function 1 58159 58470
YP_004957300.1 NC_016564_p27 hypothetical protein singleton unknown function unknown function -1 15650 16096
YP_004957283.1 NC_016564_p10 site-specific DNA methylase phrog_116 DNA methyltransferase other 1 6399 7439
YP_004957334.1 NC_016564_p61 hypothetical protein singleton unknown function unknown function 1 38491 40917
YP_004957400.1 NC_016564_p127 FtsK/SpoIIIE protein singleton unknown function unknown function -1 87003 88430
YP_004957371.1 NC_016564_p98 nuclease phrog_498 DNA methyltransferase other 1 70950 72074
YP_004957363.1 NC_016564_p90 hypothetical protein singleton unknown function unknown function -1 67046 67480
YP_004957398.1 NC_016564_p125 hypothetical protein singleton unknown function unknown function -1 86338 86577
YP_004957392.1 NC_016564_p119 crossover junction endodeoxyribonuclease phrog_1770 Holliday junction resolvase DNA, RNA and nucleotide metabolism -1 83587 84066
YP_004957275.1 NC_016564_p2 hypothetical protein singleton unknown function unknown function -1 296 838
YP_004957314.1 NC_016564_p41 hypothetical protein singleton unknown function unknown function 1 23317 23523
YP_004957307.1 NC_016564_p34 hypothetical protein phrog_11928 unknown function unknown function 1 19296 19589
YP_004957284.1 NC_016564_p11 hypothetical protein singleton unknown function unknown function 1 7436 7867
YP_004957321.1 NC_016564_p48 hypothetical protein singleton unknown function unknown function -1 27797 27976
YP_004957316.1 NC_016564_p43 hypothetical protein singleton unknown function unknown function -1 23958 24260
YP_004957369.1 NC_016564_p96 hypothetical protein singleton unknown function unknown function -1 70213 70326
YP_004957372.1 NC_016564_p99 hypothetical protein singleton unknown function unknown function 1 72166 72360
YP_004957290.1 NC_016564_p17 hypothetical protein singleton unknown function unknown function 1 9890 10159
YP_004957393.1 NC_016564_p120 hypothetical protein singleton unknown function unknown function -1 84063 84380
YP_004957375.1 NC_016564_p102 hypothetical protein singleton unknown function unknown function -1 73471 73755
YP_004957322.1 NC_016564_p49 hypothetical protein phrog_15468 unknown function unknown function -1 27977 30343
YP_004957404.1 NC_016564_p131 hypothetical protein singleton unknown function unknown function -1 91029 91217
YP_004957277.1 NC_016564_p4 hypothetical protein singleton unknown function unknown function 1 1629 1907
YP_004957342.1 NC_016564_p69 G protein phrog_26 tail completion or Neck1 protein connector 1 46453 46872
YP_004957274.1 NC_016564_p1 hypothetical protein singleton unknown function unknown function -1 114 296
YP_004957405.1 NC_016564_p132 hypothetical protein singleton unknown function unknown function 1 91351 91605
YP_004957361.1 NC_016564_p88 tail tape measure protein singleton unknown function unknown function 1 61293 66047
YP_004957346.1 NC_016564_p73 capsid protein phrog_264 major head protein head and packaging 1 49731 50684
YP_004957333.1 NC_016564_p60 hypothetical protein singleton unknown function unknown function 1 38221 38445
YP_004957337.1 NC_016564_p64 KilA-like protein phrog_63 anti-repressor Ant transcription regulation 1 41786 42583
YP_004957349.1 NC_016564_p76 hypothetical protein singleton unknown function unknown function 1 51502 51687
YP_004957401.1 NC_016564_p128 hypothetical protein singleton unknown function unknown function -1 88414 89223
YP_004957320.1 NC_016564_p47 hypothetical protein singleton unknown function unknown function -1 27603 27809
YP_004957409.1 NC_016564_p136 hypothetical protein singleton unknown function unknown function -1 92675 93043
YP_004957298.1 NC_016564_p25 hypothetical protein singleton unknown function unknown function 1 14888 15091
YP_004957366.1 NC_016564_p93 hypothetical protein singleton unknown function unknown function -1 68088 68249
YP_004957381.1 NC_016564_p108 hypothetical protein singleton unknown function unknown function -1 76024 76281
YP_004957367.1 NC_016564_p94 hypothetical protein singleton unknown function unknown function 1 68537 68776
YP_004957341.1 NC_016564_p68 hypothetical protein phrog_32599 unknown function unknown function 1 45858 46394
YP_004957328.1 NC_016564_p55 hypothetical protein singleton unknown function unknown function -1 33879 34520
YP_004957340.1 NC_016564_p67 hypothetical protein singleton unknown function unknown function 1 45616 45750
YP_004957306.1 NC_016564_p33 ABC transporter phrog_293 ABC transporter moron, auxiliary metabolic gene and host takeover 1 18485 19240
YP_004957281.1 NC_016564_p8 hypothetical protein singleton unknown function unknown function 1 5399 5827
YP_004957368.1 NC_016564_p95 DNA damage-inducible protein phrog_63 anti-repressor Ant transcription regulation -1 69187 70020
YP_004957295.1 NC_016564_p22 phycobilisome degradation protein nbla phrog_23930 unknown function unknown function -1 13384 13548
YP_004957344.1 NC_016564_p71 capsid protein phrog_530 head maturation protease head and packaging 1 47352 48875
YP_004957352.1 NC_016564_p79 hypothetical protein phrog_16619 minor head protein head and packaging 1 53749 55524
YP_004957376.1 NC_016564_p103 hypothetical protein singleton unknown function unknown function 1 73935 74162
YP_004957285.1 NC_016564_p12 hypothetical protein singleton unknown function unknown function 1 7872 8192
YP_004957385.1 NC_016564_p112 hypothetical protein singleton unknown function unknown function -1 77931 78515
YP_004957373.1 NC_016564_p100 anti-repressor protein phrog_63 anti-repressor Ant transcription regulation 1 72400 72960
YP_004957414.1 NC_016564_p141 hypothetical protein singleton unknown function unknown function -1 94273 94380
YP_004957357.1 NC_016564_p84 hypothetical protein singleton unknown function unknown function 1 58479 59075
YP_004957332.1 NC_016564_p59 hypothetical protein singleton unknown function unknown function 1 38055 38171
YP_004957386.1 NC_016564_p113 hypothetical protein singleton unknown function unknown function -1 78530 80920
YP_004957301.1 NC_016564_p28 hypothetical protein phrog_32599 unknown function unknown function -1 16158 16676
YP_004957318.1 NC_016564_p45 hypothetical protein singleton unknown function unknown function -1 25289 25777
YP_004957288.1 NC_016564_p15 hypothetical protein singleton unknown function unknown function 1 9310 9591
YP_004957380.1 NC_016564_p107 hypothetical protein phrog_6422 Lar-like restriction alleviation protein moron, auxiliary metabolic gene and host takeover -1 75744 76034
YP_004957311.1 NC_016564_p38 hypothetical protein singleton unknown function unknown function -1 22109 22534
YP_004957304.1 NC_016564_p31 hypothetical protein singleton unknown function unknown function -1 17533 17760
YP_004957330.1 NC_016564_p57 portal protein phrog_146 portal protein head and packaging 1 35268 37256
YP_004957396.1 NC_016564_p123 peptidase M23 phrog_6700 endolysin lysis -1 85383 85976
YP_004957413.1 NC_016564_p140 hypothetical protein phrog_625 unknown function unknown function -1 93956 94276
YP_004957308.1 NC_016564_p35 hypothetical protein singleton unknown function unknown function 1 19586 19957
YP_004957319.1 NC_016564_p46 hypothetical protein singleton unknown function unknown function -1 25849 27576
YP_004957408.1 NC_016564_p135 hypothetical protein singleton unknown function unknown function -1 92397 92678
YP_004957329.1 NC_016564_p56 hypothetical protein phrog_29986 unknown function unknown function -1 34513 35169
YP_004957387.1 NC_016564_p114 hypothetical protein singleton unknown function unknown function -1 80922 81809
YP_004957317.1 NC_016564_p44 hypothetical protein phrog_3018 head decoration protein head and packaging -1 24263 25288
YP_004957359.1 NC_016564_p86 hypothetical protein singleton unknown function unknown function -1 60207 60404
YP_004957391.1 NC_016564_p118 hypothetical protein singleton unknown function unknown function -1 83292 83585
YP_004957399.1 NC_016564_p126 hypothetical protein singleton unknown function unknown function -1 86585 86893
YP_004957377.1 NC_016564_p104 hypothetical protein singleton unknown function unknown function -1 74187 74627
YP_004957296.1 NC_016564_p23 hypothetical protein singleton unknown function unknown function 1 13731 13940
YP_004957282.1 NC_016564_p9 hypothetical protein singleton unknown function unknown function 1 5824 6399
YP_004957384.1 NC_016564_p111 hypothetical protein singleton unknown function unknown function 1 77202 77996
YP_004957365.1 NC_016564_p92 hypothetical protein singleton unknown function unknown function -1 67811 68095
YP_004957294.1 NC_016564_p21 thymidine kinase phrog_761 thymidylate kinase other -1 12800 13387
YP_004957313.1 NC_016564_p40 hypothetical protein singleton unknown function unknown function -1 22767 23171
YP_004957289.1 NC_016564_p16 hypothetical protein singleton unknown function unknown function 1 9602 9889
YP_004957415.1 NC_016564_p142 hypothetical protein phrog_26896 unknown function unknown function -1 94392 95195
YP_004957336.1 NC_016564_p63 hypothetical protein singleton unknown function unknown function -1 41563 41802
YP_004957351.1 NC_016564_p78 hypothetical protein singleton unknown function unknown function 1 52141 53619
YP_004957292.1 NC_016564_p19 hypothetical protein singleton unknown function unknown function 1 11587 11778
YP_004957370.1 NC_016564_p97 hypothetical protein singleton unknown function unknown function -1 70307 70549
YP_004957353.1 NC_016564_p80 hypothetical protein phrog_33618 unknown function unknown function 1 55630 56724
YP_004957286.1 NC_016564_p13 hypothetical protein singleton unknown function unknown function 1 8437 8925
YP_004957293.1 NC_016564_p20 phosphoadenosine phosphosulfate reductase phrog_424 phosphoadenosine phosphosulfate reductase moron, auxiliary metabolic gene and host takeover 1 11844 12731
YP_004957412.1 NC_016564_p139 hypothetical protein phrog_35 transcriptional repressor transcription regulation -1 93534 93884
YP_004957388.1 NC_016564_p115 thymidylate synthase singleton unknown function unknown function -1 81974 82249
YP_004957390.1 NC_016564_p117 DNA N-6-adenine-methyltransferase phrog_111 DNA methyltransferase other 1 82652 83203
YP_004957279.1 NC_016564_p6 hypothetical protein singleton unknown function unknown function 1 3072 3659
YP_004957278.1 NC_016564_p5 replication-related protein phrog_345 replication initiation O-like DNA, RNA and nucleotide metabolism 1 1904 3067
YP_004957402.1 NC_016564_p129 hypothetical protein singleton unknown function unknown function -1 89229 89660
YP_004957360.1 NC_016564_p87 hypothetical protein singleton unknown function unknown function 1 60561 61181
YP_004957345.1 NC_016564_p72 hypothetical protein phrog_33525 unknown function unknown function 1 48875 49705
YP_004957299.1 NC_016564_p26 hypothetical protein singleton unknown function unknown function 1 15283 15543
YP_004957389.1 NC_016564_p116 hypothetical protein singleton unknown function unknown function -1 82242 82526
YP_004957411.1 NC_016564_p138 hypothetical protein singleton unknown function unknown function -1 93343 93534
YP_004957364.1 NC_016564_p91 hypothetical protein singleton unknown function unknown function -1 67477 67737
YP_004957338.1 NC_016564_p65 hypothetical protein singleton unknown function unknown function 1 42710 45019
YP_004957297.1 NC_016564_p24 hypothetical protein singleton unknown function unknown function 1 13999 14799
YP_004957347.1 NC_016564_p74 hypothetical protein phrog_1983 unknown function unknown function 1 50687 51166
YP_004957394.1 NC_016564_p121 hypothetical protein singleton unknown function unknown function -1 84413 84688