| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_016564 |
Definition |
Planktothrix phage PaV-LD, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae. |
DB of origin |
REFSEQ |
Length |
95299 |
Host Name |
Planktothrix agardhii |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
142 |
%GC |
41.44 |
Number of singletons |
94 |
Number of paralogs |
7 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_004957312.1 | NC_016564_p39 | hypothetical protein | singleton | unknown function | unknown function | -1 | 22536 | 22751 |
| YP_004957374.1 | NC_016564_p101 | hypothetical protein | singleton | unknown function | unknown function | -1 | 73068 | 73325 |
| YP_004957324.1 | NC_016564_p51 | hypothetical protein | singleton | unknown function | unknown function | -1 | 30722 | 31066 |
| YP_004957354.1 | NC_016564_p81 | virion structural protein | phrog_33618 | unknown function | unknown function | 1 | 56721 | 57875 |
| YP_004957403.1 | NC_016564_p130 | hypothetical protein | singleton | unknown function | unknown function | -1 | 89983 | 90486 |
| YP_004957335.1 | NC_016564_p62 | hypothetical protein | phrog_16619 | minor head protein | head and packaging | 1 | 40907 | 41488 |
| YP_004957358.1 | NC_016564_p85 | minor virion protein | phrog_16619 | minor head protein | head and packaging | 1 | 59123 | 60205 |
| YP_004957331.1 | NC_016564_p58 | hypothetical protein | phrog_35535 | unknown function | unknown function | 1 | 37571 | 37993 |
| YP_004957397.1 | NC_016564_p124 | hypothetical protein | singleton | unknown function | unknown function | -1 | 85979 | 86341 |
| YP_004957379.1 | NC_016564_p106 | hypothetical protein | singleton | unknown function | unknown function | -1 | 75293 | 75637 |
| YP_004957362.1 | NC_016564_p89 | hypothetical protein | singleton | unknown function | unknown function | -1 | 66461 | 66916 |
| YP_004957407.1 | NC_016564_p134 | hypothetical protein | singleton | unknown function | unknown function | -1 | 92279 | 92404 |
| YP_004957382.1 | NC_016564_p109 | hypothetical protein | singleton | unknown function | unknown function | 1 | 76344 | 76709 |
| YP_004957343.1 | NC_016564_p70 | hypothetical protein | singleton | unknown function | unknown function | -1 | 46847 | 47221 |
| YP_004957309.1 | NC_016564_p36 | protein phosphatase | phrog_17277 | unknown function | unknown function | 1 | 20071 | 21201 |
| YP_004957378.1 | NC_016564_p105 | hypothetical protein | phrog_129 | transcriptional regulator | transcription regulation | -1 | 74659 | 75186 |
| YP_004957355.1 | NC_016564_p82 | hypothetical protein | singleton | unknown function | unknown function | 1 | 57877 | 58152 |
| YP_004957315.1 | NC_016564_p42 | hypothetical protein | singleton | unknown function | unknown function | -1 | 23609 | 23944 |
| YP_004957410.1 | NC_016564_p137 | hypothetical protein | singleton | unknown function | unknown function | -1 | 93047 | 93346 |
| YP_004957287.1 | NC_016564_p14 | hypothetical protein | singleton | unknown function | unknown function | 1 | 8993 | 9295 |
| YP_004957348.1 | NC_016564_p75 | hypothetical protein | phrog_302 | virion structural protein | head and packaging | 1 | 51170 | 51505 |
| YP_004957291.1 | NC_016564_p18 | integrase | phrog_1 | integrase | integration and excision | 1 | 10405 | 11538 |
| YP_004957302.1 | NC_016564_p29 | hypothetical protein | phrog_8769 | methyltransferase | other | -1 | 16783 | 17160 |
| YP_004957276.1 | NC_016564_p3 | hypothetical protein | singleton | unknown function | unknown function | -1 | 919 | 1302 |
| YP_004957326.1 | NC_016564_p53 | terminase large subunit | phrog_2 | terminase large subunit | head and packaging | -1 | 31517 | 33121 |
| YP_004957395.1 | NC_016564_p122 | hypothetical protein | phrog_315 | endolysin | lysis | -1 | 84775 | 85386 |
| YP_004957303.1 | NC_016564_p30 | hypothetical protein | singleton | unknown function | unknown function | -1 | 17318 | 17536 |
| YP_004957350.1 | NC_016564_p77 | hypothetical protein | phrog_27999 | unknown function | unknown function | 1 | 51684 | 52103 |
| YP_004957310.1 | NC_016564_p37 | protein kinase | phrog_2361 | serine-threonine kinase | other | 1 | 21207 | 22025 |
| YP_004957327.1 | NC_016564_p54 | hypothetical protein | phrog_23655 | unknown function | unknown function | -1 | 33229 | 33879 |
| YP_004957325.1 | NC_016564_p52 | hypothetical protein | singleton | unknown function | unknown function | 1 | 31098 | 31514 |
| YP_004957280.1 | NC_016564_p7 | replicative DNA helicase | phrog_19 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | 1 | 3659 | 5398 |
| YP_004957339.1 | NC_016564_p66 | hypothetical protein | phrog_16619 | minor head protein | head and packaging | 1 | 45091 | 45603 |
| YP_004957383.1 | NC_016564_p110 | hypothetical protein | singleton | unknown function | unknown function | 1 | 76723 | 77202 |
| YP_004957406.1 | NC_016564_p133 | hypothetical protein | singleton | unknown function | unknown function | -1 | 91711 | 92043 |
| YP_004957323.1 | NC_016564_p50 | hypothetical protein | singleton | unknown function | unknown function | -1 | 30348 | 30689 |
| YP_004957305.1 | NC_016564_p32 | acetyltransferase | phrog_1249 | acetyltransferase | other | -1 | 17897 | 18490 |
| YP_004957356.1 | NC_016564_p83 | hypothetical protein | singleton | unknown function | unknown function | 1 | 58159 | 58470 |
| YP_004957300.1 | NC_016564_p27 | hypothetical protein | singleton | unknown function | unknown function | -1 | 15650 | 16096 |
| YP_004957283.1 | NC_016564_p10 | site-specific DNA methylase | phrog_116 | DNA methyltransferase | other | 1 | 6399 | 7439 |
| YP_004957334.1 | NC_016564_p61 | hypothetical protein | singleton | unknown function | unknown function | 1 | 38491 | 40917 |
| YP_004957400.1 | NC_016564_p127 | FtsK/SpoIIIE protein | singleton | unknown function | unknown function | -1 | 87003 | 88430 |
| YP_004957371.1 | NC_016564_p98 | nuclease | phrog_498 | DNA methyltransferase | other | 1 | 70950 | 72074 |
| YP_004957363.1 | NC_016564_p90 | hypothetical protein | singleton | unknown function | unknown function | -1 | 67046 | 67480 |
| YP_004957398.1 | NC_016564_p125 | hypothetical protein | singleton | unknown function | unknown function | -1 | 86338 | 86577 |
| YP_004957392.1 | NC_016564_p119 | crossover junction endodeoxyribonuclease | phrog_1770 | Holliday junction resolvase | DNA, RNA and nucleotide metabolism | -1 | 83587 | 84066 |
| YP_004957275.1 | NC_016564_p2 | hypothetical protein | singleton | unknown function | unknown function | -1 | 296 | 838 |
| YP_004957314.1 | NC_016564_p41 | hypothetical protein | singleton | unknown function | unknown function | 1 | 23317 | 23523 |
| YP_004957307.1 | NC_016564_p34 | hypothetical protein | phrog_11928 | unknown function | unknown function | 1 | 19296 | 19589 |
| YP_004957284.1 | NC_016564_p11 | hypothetical protein | singleton | unknown function | unknown function | 1 | 7436 | 7867 |
| YP_004957321.1 | NC_016564_p48 | hypothetical protein | singleton | unknown function | unknown function | -1 | 27797 | 27976 |
| YP_004957316.1 | NC_016564_p43 | hypothetical protein | singleton | unknown function | unknown function | -1 | 23958 | 24260 |
| YP_004957369.1 | NC_016564_p96 | hypothetical protein | singleton | unknown function | unknown function | -1 | 70213 | 70326 |
| YP_004957372.1 | NC_016564_p99 | hypothetical protein | singleton | unknown function | unknown function | 1 | 72166 | 72360 |
| YP_004957290.1 | NC_016564_p17 | hypothetical protein | singleton | unknown function | unknown function | 1 | 9890 | 10159 |
| YP_004957393.1 | NC_016564_p120 | hypothetical protein | singleton | unknown function | unknown function | -1 | 84063 | 84380 |
| YP_004957375.1 | NC_016564_p102 | hypothetical protein | singleton | unknown function | unknown function | -1 | 73471 | 73755 |
| YP_004957322.1 | NC_016564_p49 | hypothetical protein | phrog_15468 | unknown function | unknown function | -1 | 27977 | 30343 |
| YP_004957404.1 | NC_016564_p131 | hypothetical protein | singleton | unknown function | unknown function | -1 | 91029 | 91217 |
| YP_004957277.1 | NC_016564_p4 | hypothetical protein | singleton | unknown function | unknown function | 1 | 1629 | 1907 |
| YP_004957342.1 | NC_016564_p69 | G protein | phrog_26 | tail completion or Neck1 protein | connector | 1 | 46453 | 46872 |
| YP_004957274.1 | NC_016564_p1 | hypothetical protein | singleton | unknown function | unknown function | -1 | 114 | 296 |
| YP_004957405.1 | NC_016564_p132 | hypothetical protein | singleton | unknown function | unknown function | 1 | 91351 | 91605 |
| YP_004957361.1 | NC_016564_p88 | tail tape measure protein | singleton | unknown function | unknown function | 1 | 61293 | 66047 |
| YP_004957346.1 | NC_016564_p73 | capsid protein | phrog_264 | major head protein | head and packaging | 1 | 49731 | 50684 |
| YP_004957333.1 | NC_016564_p60 | hypothetical protein | singleton | unknown function | unknown function | 1 | 38221 | 38445 |
| YP_004957337.1 | NC_016564_p64 | KilA-like protein | phrog_63 | anti-repressor Ant | transcription regulation | 1 | 41786 | 42583 |
| YP_004957349.1 | NC_016564_p76 | hypothetical protein | singleton | unknown function | unknown function | 1 | 51502 | 51687 |
| YP_004957401.1 | NC_016564_p128 | hypothetical protein | singleton | unknown function | unknown function | -1 | 88414 | 89223 |
| YP_004957320.1 | NC_016564_p47 | hypothetical protein | singleton | unknown function | unknown function | -1 | 27603 | 27809 |
| YP_004957409.1 | NC_016564_p136 | hypothetical protein | singleton | unknown function | unknown function | -1 | 92675 | 93043 |
| YP_004957298.1 | NC_016564_p25 | hypothetical protein | singleton | unknown function | unknown function | 1 | 14888 | 15091 |
| YP_004957366.1 | NC_016564_p93 | hypothetical protein | singleton | unknown function | unknown function | -1 | 68088 | 68249 |
| YP_004957381.1 | NC_016564_p108 | hypothetical protein | singleton | unknown function | unknown function | -1 | 76024 | 76281 |
| YP_004957367.1 | NC_016564_p94 | hypothetical protein | singleton | unknown function | unknown function | 1 | 68537 | 68776 |
| YP_004957341.1 | NC_016564_p68 | hypothetical protein | phrog_32599 | unknown function | unknown function | 1 | 45858 | 46394 |
| YP_004957328.1 | NC_016564_p55 | hypothetical protein | singleton | unknown function | unknown function | -1 | 33879 | 34520 |
| YP_004957340.1 | NC_016564_p67 | hypothetical protein | singleton | unknown function | unknown function | 1 | 45616 | 45750 |
| YP_004957306.1 | NC_016564_p33 | ABC transporter | phrog_293 | ABC transporter | moron, auxiliary metabolic gene and host takeover | 1 | 18485 | 19240 |
| YP_004957281.1 | NC_016564_p8 | hypothetical protein | singleton | unknown function | unknown function | 1 | 5399 | 5827 |
| YP_004957368.1 | NC_016564_p95 | DNA damage-inducible protein | phrog_63 | anti-repressor Ant | transcription regulation | -1 | 69187 | 70020 |
| YP_004957295.1 | NC_016564_p22 | phycobilisome degradation protein nbla | phrog_23930 | unknown function | unknown function | -1 | 13384 | 13548 |
| YP_004957344.1 | NC_016564_p71 | capsid protein | phrog_530 | head maturation protease | head and packaging | 1 | 47352 | 48875 |
| YP_004957352.1 | NC_016564_p79 | hypothetical protein | phrog_16619 | minor head protein | head and packaging | 1 | 53749 | 55524 |
| YP_004957376.1 | NC_016564_p103 | hypothetical protein | singleton | unknown function | unknown function | 1 | 73935 | 74162 |
| YP_004957285.1 | NC_016564_p12 | hypothetical protein | singleton | unknown function | unknown function | 1 | 7872 | 8192 |
| YP_004957385.1 | NC_016564_p112 | hypothetical protein | singleton | unknown function | unknown function | -1 | 77931 | 78515 |
| YP_004957373.1 | NC_016564_p100 | anti-repressor protein | phrog_63 | anti-repressor Ant | transcription regulation | 1 | 72400 | 72960 |
| YP_004957414.1 | NC_016564_p141 | hypothetical protein | singleton | unknown function | unknown function | -1 | 94273 | 94380 |
| YP_004957357.1 | NC_016564_p84 | hypothetical protein | singleton | unknown function | unknown function | 1 | 58479 | 59075 |
| YP_004957332.1 | NC_016564_p59 | hypothetical protein | singleton | unknown function | unknown function | 1 | 38055 | 38171 |
| YP_004957386.1 | NC_016564_p113 | hypothetical protein | singleton | unknown function | unknown function | -1 | 78530 | 80920 |
| YP_004957301.1 | NC_016564_p28 | hypothetical protein | phrog_32599 | unknown function | unknown function | -1 | 16158 | 16676 |
| YP_004957318.1 | NC_016564_p45 | hypothetical protein | singleton | unknown function | unknown function | -1 | 25289 | 25777 |
| YP_004957288.1 | NC_016564_p15 | hypothetical protein | singleton | unknown function | unknown function | 1 | 9310 | 9591 |
| YP_004957380.1 | NC_016564_p107 | hypothetical protein | phrog_6422 | Lar-like restriction alleviation protein | moron, auxiliary metabolic gene and host takeover | -1 | 75744 | 76034 |
| YP_004957311.1 | NC_016564_p38 | hypothetical protein | singleton | unknown function | unknown function | -1 | 22109 | 22534 |
| YP_004957304.1 | NC_016564_p31 | hypothetical protein | singleton | unknown function | unknown function | -1 | 17533 | 17760 |
| YP_004957330.1 | NC_016564_p57 | portal protein | phrog_146 | portal protein | head and packaging | 1 | 35268 | 37256 |
| YP_004957396.1 | NC_016564_p123 | peptidase M23 | phrog_6700 | endolysin | lysis | -1 | 85383 | 85976 |
| YP_004957413.1 | NC_016564_p140 | hypothetical protein | phrog_625 | unknown function | unknown function | -1 | 93956 | 94276 |
| YP_004957308.1 | NC_016564_p35 | hypothetical protein | singleton | unknown function | unknown function | 1 | 19586 | 19957 |
| YP_004957319.1 | NC_016564_p46 | hypothetical protein | singleton | unknown function | unknown function | -1 | 25849 | 27576 |
| YP_004957408.1 | NC_016564_p135 | hypothetical protein | singleton | unknown function | unknown function | -1 | 92397 | 92678 |
| YP_004957329.1 | NC_016564_p56 | hypothetical protein | phrog_29986 | unknown function | unknown function | -1 | 34513 | 35169 |
| YP_004957387.1 | NC_016564_p114 | hypothetical protein | singleton | unknown function | unknown function | -1 | 80922 | 81809 |
| YP_004957317.1 | NC_016564_p44 | hypothetical protein | phrog_3018 | head decoration protein | head and packaging | -1 | 24263 | 25288 |
| YP_004957359.1 | NC_016564_p86 | hypothetical protein | singleton | unknown function | unknown function | -1 | 60207 | 60404 |
| YP_004957391.1 | NC_016564_p118 | hypothetical protein | singleton | unknown function | unknown function | -1 | 83292 | 83585 |
| YP_004957399.1 | NC_016564_p126 | hypothetical protein | singleton | unknown function | unknown function | -1 | 86585 | 86893 |
| YP_004957377.1 | NC_016564_p104 | hypothetical protein | singleton | unknown function | unknown function | -1 | 74187 | 74627 |
| YP_004957296.1 | NC_016564_p23 | hypothetical protein | singleton | unknown function | unknown function | 1 | 13731 | 13940 |
| YP_004957282.1 | NC_016564_p9 | hypothetical protein | singleton | unknown function | unknown function | 1 | 5824 | 6399 |
| YP_004957384.1 | NC_016564_p111 | hypothetical protein | singleton | unknown function | unknown function | 1 | 77202 | 77996 |
| YP_004957365.1 | NC_016564_p92 | hypothetical protein | singleton | unknown function | unknown function | -1 | 67811 | 68095 |
| YP_004957294.1 | NC_016564_p21 | thymidine kinase | phrog_761 | thymidylate kinase | other | -1 | 12800 | 13387 |
| YP_004957313.1 | NC_016564_p40 | hypothetical protein | singleton | unknown function | unknown function | -1 | 22767 | 23171 |
| YP_004957289.1 | NC_016564_p16 | hypothetical protein | singleton | unknown function | unknown function | 1 | 9602 | 9889 |
| YP_004957415.1 | NC_016564_p142 | hypothetical protein | phrog_26896 | unknown function | unknown function | -1 | 94392 | 95195 |
| YP_004957336.1 | NC_016564_p63 | hypothetical protein | singleton | unknown function | unknown function | -1 | 41563 | 41802 |
| YP_004957351.1 | NC_016564_p78 | hypothetical protein | singleton | unknown function | unknown function | 1 | 52141 | 53619 |
| YP_004957292.1 | NC_016564_p19 | hypothetical protein | singleton | unknown function | unknown function | 1 | 11587 | 11778 |
| YP_004957370.1 | NC_016564_p97 | hypothetical protein | singleton | unknown function | unknown function | -1 | 70307 | 70549 |
| YP_004957353.1 | NC_016564_p80 | hypothetical protein | phrog_33618 | unknown function | unknown function | 1 | 55630 | 56724 |
| YP_004957286.1 | NC_016564_p13 | hypothetical protein | singleton | unknown function | unknown function | 1 | 8437 | 8925 |
| YP_004957293.1 | NC_016564_p20 | phosphoadenosine phosphosulfate reductase | phrog_424 | phosphoadenosine phosphosulfate reductase | moron, auxiliary metabolic gene and host takeover | 1 | 11844 | 12731 |
| YP_004957412.1 | NC_016564_p139 | hypothetical protein | phrog_35 | transcriptional repressor | transcription regulation | -1 | 93534 | 93884 |
| YP_004957388.1 | NC_016564_p115 | thymidylate synthase | singleton | unknown function | unknown function | -1 | 81974 | 82249 |
| YP_004957390.1 | NC_016564_p117 | DNA N-6-adenine-methyltransferase | phrog_111 | DNA methyltransferase | other | 1 | 82652 | 83203 |
| YP_004957279.1 | NC_016564_p6 | hypothetical protein | singleton | unknown function | unknown function | 1 | 3072 | 3659 |
| YP_004957278.1 | NC_016564_p5 | replication-related protein | phrog_345 | replication initiation O-like | DNA, RNA and nucleotide metabolism | 1 | 1904 | 3067 |
| YP_004957402.1 | NC_016564_p129 | hypothetical protein | singleton | unknown function | unknown function | -1 | 89229 | 89660 |
| YP_004957360.1 | NC_016564_p87 | hypothetical protein | singleton | unknown function | unknown function | 1 | 60561 | 61181 |
| YP_004957345.1 | NC_016564_p72 | hypothetical protein | phrog_33525 | unknown function | unknown function | 1 | 48875 | 49705 |
| YP_004957299.1 | NC_016564_p26 | hypothetical protein | singleton | unknown function | unknown function | 1 | 15283 | 15543 |
| YP_004957389.1 | NC_016564_p116 | hypothetical protein | singleton | unknown function | unknown function | -1 | 82242 | 82526 |
| YP_004957411.1 | NC_016564_p138 | hypothetical protein | singleton | unknown function | unknown function | -1 | 93343 | 93534 |
| YP_004957364.1 | NC_016564_p91 | hypothetical protein | singleton | unknown function | unknown function | -1 | 67477 | 67737 |
| YP_004957338.1 | NC_016564_p65 | hypothetical protein | singleton | unknown function | unknown function | 1 | 42710 | 45019 |
| YP_004957297.1 | NC_016564_p24 | hypothetical protein | singleton | unknown function | unknown function | 1 | 13999 | 14799 |
| YP_004957347.1 | NC_016564_p74 | hypothetical protein | phrog_1983 | unknown function | unknown function | 1 | 50687 | 51166 |
| YP_004957394.1 | NC_016564_p121 | hypothetical protein | singleton | unknown function | unknown function | -1 | 84413 | 84688 |