| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_016565 |
Definition |
Staphylococcus phage S24-1, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae; Rakietenvirinae; Rosenblumvirus; Staphylococcus virus S24-1. |
DB of origin |
REFSEQ |
Length |
18168 |
Host Name |
Staphylococcus aureus |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
21 |
%GC |
28.9 |
Number of singletons |
0 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_004957431.1 | NC_016565_p16 | structure protein, minor tail protein | phrog_287 | minor tail protein | tail | -1 | 12420 | 14348 |
| YP_004957433.1 | NC_016565_p18 | upper collar protein | phrog_2038 | upper collar connector | connector | -1 | 15109 | 16092 |
| YP_004957434.1 | NC_016565_p19 | major capsid protein | phrog_2006 | major head protein | head and packaging | -1 | 16107 | 17318 |
| YP_004957436.1 | NC_016565_p21 | hypothetical protein | phrog_7102 | unknown function | unknown function | -1 | 17521 | 17880 |
| YP_004957426.1 | NC_016565_p11 | tail lysin | phrog_5979 | unknown function | unknown function | -1 | 6490 | 7929 |
| YP_004957424.1 | NC_016565_p9 | hypothetical protein | phrog_2150 | terminase | head and packaging | 1 | 2828 | 4075 |
| YP_004957430.1 | NC_016565_p15 | endolysin | phrog_635 | endolysin | lysis | -1 | 11656 | 12408 |
| YP_004957427.1 | NC_016565_p12 | holin | phrog_199 | holin | lysis | -1 | 7904 | 8326 |
| YP_004957421.1 | NC_016565_p6 | hypothetical protein | phrog_7529 | unknown function | unknown function | 1 | 1728 | 2132 |
| YP_004957435.1 | NC_016565_p20 | hypothetical protein | phrog_6289 | unknown function | unknown function | -1 | 17325 | 17507 |
| YP_004957432.1 | NC_016565_p17 | lower collar protein | phrog_3225 | adaptor Ad4 | connector | -1 | 14361 | 15116 |
| YP_004957420.1 | NC_016565_p5 | hypothetical protein | phrog_7019 | unknown function | unknown function | 1 | 1550 | 1726 |
| YP_004957422.1 | NC_016565_p7 | hypothetical protein | phrog_8543 | unknown function | unknown function | 1 | 2125 | 2295 |
| YP_004957416.1 | NC_016565_p1 | hypothetical protein | phrog_10178 | unknown function | unknown function | 1 | 377 | 559 |
| YP_004957418.1 | NC_016565_p3 | hypothetical protein | phrog_6346 | unknown function | unknown function | 1 | 872 | 1108 |
| YP_004957423.1 | NC_016565_p8 | hypothetical protein | phrog_6099 | unknown function | unknown function | 1 | 2298 | 2780 |
| YP_004957417.1 | NC_016565_p2 | hypothetical protein | phrog_6274 | unknown function | unknown function | 1 | 552 | 854 |
| YP_004957428.1 | NC_016565_p13 | structure protein major tail protein | phrog_2248 | tail protein | tail | -1 | 8329 | 10092 |
| YP_004957429.1 | NC_016565_p14 | structure protein minor tail protein | phrog_9604 | tail protein | tail | -1 | 10148 | 11593 |
| YP_004957425.1 | NC_016565_p10 | DNA polymerase | phrog_1907 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 4090 | 6375 |
| YP_004957419.1 | NC_016565_p4 | single stranded DNA binding protein | phrog_378 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 1132 | 1494 |