Genomic map of Staphylococcus phage S24-1 (NC_016565)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_016565
Definition
Staphylococcus phage S24-1, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae; Rakietenvirinae; Rosenblumvirus; Staphylococcus virus S24-1.
DB of origin
REFSEQ
Length
18168
Host Name
Staphylococcus aureus
Host domain
Bacteria
Is prophage?
undef
Number of proteins
21
%GC
28.9
Number of singletons
0
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_004957431.1 NC_016565_p16 structure protein, minor tail protein phrog_287 minor tail protein tail -1 12420 14348
YP_004957433.1 NC_016565_p18 upper collar protein phrog_2038 upper collar connector connector -1 15109 16092
YP_004957434.1 NC_016565_p19 major capsid protein phrog_2006 major head protein head and packaging -1 16107 17318
YP_004957436.1 NC_016565_p21 hypothetical protein phrog_7102 unknown function unknown function -1 17521 17880
YP_004957426.1 NC_016565_p11 tail lysin phrog_5979 unknown function unknown function -1 6490 7929
YP_004957424.1 NC_016565_p9 hypothetical protein phrog_2150 terminase head and packaging 1 2828 4075
YP_004957430.1 NC_016565_p15 endolysin phrog_635 endolysin lysis -1 11656 12408
YP_004957427.1 NC_016565_p12 holin phrog_199 holin lysis -1 7904 8326
YP_004957421.1 NC_016565_p6 hypothetical protein phrog_7529 unknown function unknown function 1 1728 2132
YP_004957435.1 NC_016565_p20 hypothetical protein phrog_6289 unknown function unknown function -1 17325 17507
YP_004957432.1 NC_016565_p17 lower collar protein phrog_3225 adaptor Ad4 connector -1 14361 15116
YP_004957420.1 NC_016565_p5 hypothetical protein phrog_7019 unknown function unknown function 1 1550 1726
YP_004957422.1 NC_016565_p7 hypothetical protein phrog_8543 unknown function unknown function 1 2125 2295
YP_004957416.1 NC_016565_p1 hypothetical protein phrog_10178 unknown function unknown function 1 377 559
YP_004957418.1 NC_016565_p3 hypothetical protein phrog_6346 unknown function unknown function 1 872 1108
YP_004957423.1 NC_016565_p8 hypothetical protein phrog_6099 unknown function unknown function 1 2298 2780
YP_004957417.1 NC_016565_p2 hypothetical protein phrog_6274 unknown function unknown function 1 552 854
YP_004957428.1 NC_016565_p13 structure protein major tail protein phrog_2248 tail protein tail -1 8329 10092
YP_004957429.1 NC_016565_p14 structure protein minor tail protein phrog_9604 tail protein tail -1 10148 11593
YP_004957425.1 NC_016565_p10 DNA polymerase phrog_1907 DNA polymerase DNA, RNA and nucleotide metabolism 1 4090 6375
YP_004957419.1 NC_016565_p4 single stranded DNA binding protein phrog_378 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 1132 1494