| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_016566 |
Definition |
Shigella phage EP23, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Dhillonvirus. |
DB of origin |
REFSEQ |
Length |
44077 |
Host Name |
Shigella sonnei |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
57 |
%GC |
54.42 |
Number of singletons |
2 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_004957438.1 | NC_016566_p2 | terminase | phrog_2 | terminase large subunit | head and packaging | 1 | 628 | 2013 |
| YP_004957465.1 | NC_016566_p29 | DNA methyltransferase | phrog_111 | DNA methyltransferase | other | -1 | 25594 | 26079 |
| YP_004957439.1 | NC_016566_p3 | phage structural protein | phrog_145 | portal protein | head and packaging | 1 | 2025 | 3545 |
| YP_004957456.1 | NC_016566_p20 | phage minor tail protein L | phrog_18 | minor tail protein | tail | 1 | 15722 | 16510 |
| YP_004957475.1 | NC_016566_p39 | hypothetical protein | phrog_11211 | unknown function | unknown function | -1 | 33289 | 33531 |
| YP_004957454.1 | NC_016566_p18 | phage tail length tape-measure protein 1 | phrog_24 | tail length tape measure protein | tail | 1 | 12447 | 15089 |
| YP_004957486.1 | NC_016566_p50 | hypothetical protein | phrog_10243 | unknown function | unknown function | 1 | 40151 | 40693 |
| YP_004957467.1 | NC_016566_p31 | hypothetical protein | phrog_99 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 26605 | 26922 |
| YP_004957458.1 | NC_016566_p22 | phage tail assembly protein I | phrog_32 | tail assembly protein | tail | 1 | 17244 | 17861 |
| YP_004957491.1 | NC_016566_p55 | hypothetical protein | phrog_11068 | unknown function | unknown function | 1 | 42280 | 42447 |
| YP_004957473.1 | NC_016566_p37 | hypothetical protein | phrog_10102 | unknown function | unknown function | -1 | 32295 | 32465 |
| YP_004957490.1 | NC_016566_p54 | lysozyme | phrog_7 | endolysin | lysis | 1 | 41772 | 42263 |
| YP_004957477.1 | NC_016566_p41 | hypothetical protein | phrog_9934 | unknown function | unknown function | -1 | 34954 | 35133 |
| YP_004957448.1 | NC_016566_p12 | hypothetical protein | phrog_11158 | unknown function | unknown function | 1 | 9044 | 9160 |
| YP_004957487.1 | NC_016566_p51 | hypothetical protein | phrog_2531 | unknown function | unknown function | 1 | 40901 | 41200 |
| YP_004957489.1 | NC_016566_p53 | holin-like class I protein | phrog_2508 | holin | lysis | 1 | 41540 | 41785 |
| YP_004957444.1 | NC_016566_p8 | DNA polymerase III beta subunit | phrog_3007 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | -1 | 5926 | 6438 |
| YP_004957446.1 | NC_016566_p10 | phage structural protein | phrog_247 | major head protein | head and packaging | 1 | 7389 | 8483 |
| YP_004957447.1 | NC_016566_p11 | hypothetical protein | phrog_477 | head-tail adaptor Ad1 | connector | 1 | 8542 | 9042 |
| YP_004957462.1 | NC_016566_p26 | hypothetical protein | phrog_9871 | unknown function | unknown function | -1 | 24304 | 24858 |
| YP_004957459.1 | NC_016566_p23 | phage tail fiber protein | phrog_31 | central tail fiber J | tail | 1 | 17858 | 21676 |
| YP_004957474.1 | NC_016566_p38 | hypothetical protein | phrog_112 | Gp2.5-like ssDNA binding protein and ssDNA annealing protein | DNA, RNA and nucleotide metabolism | -1 | 32524 | 33198 |
| YP_004957442.1 | NC_016566_p6 | hypothetical protein | phrog_5672 | Rz-like spanin | lysis | 1 | 4908 | 5066 |
| YP_004957470.1 | NC_016566_p34 | hypothetical protein | phrog_5558 | Lar-like restriction alleviation protein | moron, auxiliary metabolic gene and host takeover | -1 | 28618 | 28791 |
| YP_004957482.1 | NC_016566_p46 | helicase-primase | phrog_3228 | replicative helicase-primase | DNA, RNA and nucleotide metabolism | 1 | 36821 | 39085 |
| YP_004957471.1 | NC_016566_p35 | hypothetical protein | phrog_93 | endonuclease | DNA, RNA and nucleotide metabolism | -1 | 28832 | 29068 |
| YP_004957485.1 | NC_016566_p49 | hypothetical protein | singleton | unknown function | unknown function | 1 | 39975 | 40154 |
| YP_004957460.1 | NC_016566_p24 | tail fiber protein | phrog_1980 | tail fiber protein | tail | 1 | 22032 | 23660 |
| YP_004957478.1 | NC_016566_p42 | hypothetical protein | phrog_4965 | unknown function | unknown function | -1 | 35133 | 35384 |
| YP_004957484.1 | NC_016566_p48 | hypothetical protein | phrog_9839 | unknown function | unknown function | 1 | 39549 | 39875 |
| YP_004957468.1 | NC_016566_p32 | helicase | phrog_62 | DNA helicase | DNA, RNA and nucleotide metabolism | -1 | 26924 | 28351 |
| YP_004957479.1 | NC_016566_p43 | hypothetical protein | phrog_15754 | unknown function | unknown function | -1 | 35433 | 35558 |
| YP_004957451.1 | NC_016566_p15 | hypothetical protein | phrog_179 | tail terminator | connector | 1 | 10095 | 10517 |
| YP_004957443.1 | NC_016566_p7 | hypothetical protein | phrog_1965 | unknown function | unknown function | -1 | 5080 | 5844 |
| YP_004957437.1 | NC_016566_p1 | hypothetical protein | phrog_3064 | terminase | head and packaging | 1 | 56 | 628 |
| YP_004957441.1 | NC_016566_p5 | hypothetical protein | phrog_2536 | Rz-like spanin | lysis | 1 | 4625 | 4954 |
| YP_004957449.1 | NC_016566_p13 | phage structural protein | phrog_161 | head closure Hc1 | connector | 1 | 9147 | 9500 |
| YP_004957445.1 | NC_016566_p9 | hypothetical protein | phrog_206 | head scaffolding protein | head and packaging | 1 | 6587 | 7291 |
| YP_004957480.1 | NC_016566_p44 | hypothetical protein | phrog_3127 | unknown function | unknown function | -1 | 35563 | 36078 |
| YP_004957453.1 | NC_016566_p17 | hypothetical protein | phrog_569 | tail length tape measure protein | tail | 1 | 11374 | 11736 |
| YP_004957457.1 | NC_016566_p21 | phage tail assembly protein | phrog_30 | minor tail protein | tail | 1 | 16513 | 17253 |
| YP_004957466.1 | NC_016566_p30 | hypothetical protein | phrog_10530 | DNA ligase | DNA, RNA and nucleotide metabolism | -1 | 26066 | 26524 |
| YP_004957493.1 | NC_016566_p57 | hypothetical protein | phrog_20931 | unknown function | unknown function | 1 | 43824 | 44036 |
| YP_004957492.1 | NC_016566_p56 | phosphoesterase | phrog_704 | DNA repair exonuclease | DNA, RNA and nucleotide metabolism | 1 | 42685 | 43827 |
| YP_004957488.1 | NC_016566_p52 | holin-like class II protein | phrog_2359 | holin | lysis | 1 | 41253 | 41543 |
| YP_004957463.1 | NC_016566_p27 | hypothetical protein | phrog_415 | polynucleotide kinase | other | -1 | 24922 | 25392 |
| YP_004957481.1 | NC_016566_p45 | hypothetical protein | phrog_9366 | transposase | integration and excision | 1 | 36481 | 36810 |
| YP_004957440.1 | NC_016566_p4 | phage head morphogeneisis protein | phrog_241 | head morphogenesis | head and packaging | 1 | 3565 | 4632 |
| YP_004957461.1 | NC_016566_p25 | hypothetical protein | phrog_10558 | unknown function | unknown function | -1 | 23686 | 24261 |
| YP_004957452.1 | NC_016566_p16 | phage tail protein | phrog_584 | major tail protein | tail | 1 | 10579 | 11304 |
| YP_004957476.1 | NC_016566_p40 | hypothetical protein | phrog_69 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 33524 | 34954 |
| YP_004957483.1 | NC_016566_p47 | hypothetical protein | singleton | unknown function | unknown function | -1 | 39291 | 39497 |
| YP_004957455.1 | NC_016566_p19 | phage minor tail protein | phrog_9922 | minor tail protein | tail | 1 | 15126 | 15725 |
| YP_004957469.1 | NC_016566_p33 | hypothetical protein | phrog_9291 | unknown function | unknown function | -1 | 28356 | 28574 |
| YP_004957472.1 | NC_016566_p36 | DNA polymerase family A | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 29110 | 32298 |
| YP_004957450.1 | NC_016566_p14 | tail protein | phrog_169 | tail completion or Neck1 protein | connector | 1 | 9502 | 10095 |
| YP_004957464.1 | NC_016566_p28 | hypothetical protein | phrog_10685 | unknown function | unknown function | -1 | 25389 | 25613 |