Genomic map of Shigella phage EP23 (NC_016566)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_016566
Definition
Shigella phage EP23, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Dhillonvirus.
DB of origin
REFSEQ
Length
44077
Host Name
Shigella sonnei
Host domain
Bacteria
Is prophage?
undef
Number of proteins
57
%GC
54.42
Number of singletons
2
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_004957438.1 NC_016566_p2 terminase phrog_2 terminase large subunit head and packaging 1 628 2013
YP_004957465.1 NC_016566_p29 DNA methyltransferase phrog_111 DNA methyltransferase other -1 25594 26079
YP_004957439.1 NC_016566_p3 phage structural protein phrog_145 portal protein head and packaging 1 2025 3545
YP_004957456.1 NC_016566_p20 phage minor tail protein L phrog_18 minor tail protein tail 1 15722 16510
YP_004957475.1 NC_016566_p39 hypothetical protein phrog_11211 unknown function unknown function -1 33289 33531
YP_004957454.1 NC_016566_p18 phage tail length tape-measure protein 1 phrog_24 tail length tape measure protein tail 1 12447 15089
YP_004957486.1 NC_016566_p50 hypothetical protein phrog_10243 unknown function unknown function 1 40151 40693
YP_004957467.1 NC_016566_p31 hypothetical protein phrog_99 HNH endonuclease DNA, RNA and nucleotide metabolism -1 26605 26922
YP_004957458.1 NC_016566_p22 phage tail assembly protein I phrog_32 tail assembly protein tail 1 17244 17861
YP_004957491.1 NC_016566_p55 hypothetical protein phrog_11068 unknown function unknown function 1 42280 42447
YP_004957473.1 NC_016566_p37 hypothetical protein phrog_10102 unknown function unknown function -1 32295 32465
YP_004957490.1 NC_016566_p54 lysozyme phrog_7 endolysin lysis 1 41772 42263
YP_004957477.1 NC_016566_p41 hypothetical protein phrog_9934 unknown function unknown function -1 34954 35133
YP_004957448.1 NC_016566_p12 hypothetical protein phrog_11158 unknown function unknown function 1 9044 9160
YP_004957487.1 NC_016566_p51 hypothetical protein phrog_2531 unknown function unknown function 1 40901 41200
YP_004957489.1 NC_016566_p53 holin-like class I protein phrog_2508 holin lysis 1 41540 41785
YP_004957444.1 NC_016566_p8 DNA polymerase III beta subunit phrog_3007 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism -1 5926 6438
YP_004957446.1 NC_016566_p10 phage structural protein phrog_247 major head protein head and packaging 1 7389 8483
YP_004957447.1 NC_016566_p11 hypothetical protein phrog_477 head-tail adaptor Ad1 connector 1 8542 9042
YP_004957462.1 NC_016566_p26 hypothetical protein phrog_9871 unknown function unknown function -1 24304 24858
YP_004957459.1 NC_016566_p23 phage tail fiber protein phrog_31 central tail fiber J tail 1 17858 21676
YP_004957474.1 NC_016566_p38 hypothetical protein phrog_112 Gp2.5-like ssDNA binding protein and ssDNA annealing protein DNA, RNA and nucleotide metabolism -1 32524 33198
YP_004957442.1 NC_016566_p6 hypothetical protein phrog_5672 Rz-like spanin lysis 1 4908 5066
YP_004957470.1 NC_016566_p34 hypothetical protein phrog_5558 Lar-like restriction alleviation protein moron, auxiliary metabolic gene and host takeover -1 28618 28791
YP_004957482.1 NC_016566_p46 helicase-primase phrog_3228 replicative helicase-primase DNA, RNA and nucleotide metabolism 1 36821 39085
YP_004957471.1 NC_016566_p35 hypothetical protein phrog_93 endonuclease DNA, RNA and nucleotide metabolism -1 28832 29068
YP_004957485.1 NC_016566_p49 hypothetical protein singleton unknown function unknown function 1 39975 40154
YP_004957460.1 NC_016566_p24 tail fiber protein phrog_1980 tail fiber protein tail 1 22032 23660
YP_004957478.1 NC_016566_p42 hypothetical protein phrog_4965 unknown function unknown function -1 35133 35384
YP_004957484.1 NC_016566_p48 hypothetical protein phrog_9839 unknown function unknown function 1 39549 39875
YP_004957468.1 NC_016566_p32 helicase phrog_62 DNA helicase DNA, RNA and nucleotide metabolism -1 26924 28351
YP_004957479.1 NC_016566_p43 hypothetical protein phrog_15754 unknown function unknown function -1 35433 35558
YP_004957451.1 NC_016566_p15 hypothetical protein phrog_179 tail terminator connector 1 10095 10517
YP_004957443.1 NC_016566_p7 hypothetical protein phrog_1965 unknown function unknown function -1 5080 5844
YP_004957437.1 NC_016566_p1 hypothetical protein phrog_3064 terminase head and packaging 1 56 628
YP_004957441.1 NC_016566_p5 hypothetical protein phrog_2536 Rz-like spanin lysis 1 4625 4954
YP_004957449.1 NC_016566_p13 phage structural protein phrog_161 head closure Hc1 connector 1 9147 9500
YP_004957445.1 NC_016566_p9 hypothetical protein phrog_206 head scaffolding protein head and packaging 1 6587 7291
YP_004957480.1 NC_016566_p44 hypothetical protein phrog_3127 unknown function unknown function -1 35563 36078
YP_004957453.1 NC_016566_p17 hypothetical protein phrog_569 tail length tape measure protein tail 1 11374 11736
YP_004957457.1 NC_016566_p21 phage tail assembly protein phrog_30 minor tail protein tail 1 16513 17253
YP_004957466.1 NC_016566_p30 hypothetical protein phrog_10530 DNA ligase DNA, RNA and nucleotide metabolism -1 26066 26524
YP_004957493.1 NC_016566_p57 hypothetical protein phrog_20931 unknown function unknown function 1 43824 44036
YP_004957492.1 NC_016566_p56 phosphoesterase phrog_704 DNA repair exonuclease DNA, RNA and nucleotide metabolism 1 42685 43827
YP_004957488.1 NC_016566_p52 holin-like class II protein phrog_2359 holin lysis 1 41253 41543
YP_004957463.1 NC_016566_p27 hypothetical protein phrog_415 polynucleotide kinase other -1 24922 25392
YP_004957481.1 NC_016566_p45 hypothetical protein phrog_9366 transposase integration and excision 1 36481 36810
YP_004957440.1 NC_016566_p4 phage head morphogeneisis protein phrog_241 head morphogenesis head and packaging 1 3565 4632
YP_004957461.1 NC_016566_p25 hypothetical protein phrog_10558 unknown function unknown function -1 23686 24261
YP_004957452.1 NC_016566_p16 phage tail protein phrog_584 major tail protein tail 1 10579 11304
YP_004957476.1 NC_016566_p40 hypothetical protein phrog_69 exonuclease DNA, RNA and nucleotide metabolism -1 33524 34954
YP_004957483.1 NC_016566_p47 hypothetical protein singleton unknown function unknown function -1 39291 39497
YP_004957455.1 NC_016566_p19 phage minor tail protein phrog_9922 minor tail protein tail 1 15126 15725
YP_004957469.1 NC_016566_p33 hypothetical protein phrog_9291 unknown function unknown function -1 28356 28574
YP_004957472.1 NC_016566_p36 DNA polymerase family A phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism -1 29110 32298
YP_004957450.1 NC_016566_p14 tail protein phrog_169 tail completion or Neck1 protein connector 1 9502 10095
YP_004957464.1 NC_016566_p28 hypothetical protein phrog_10685 unknown function unknown function -1 25389 25613