| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_016652 |
Definition |
Rhodococcus phage REQ2, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae. |
DB of origin |
REFSEQ |
Length |
49330 |
Host Name |
Rhodococcus equi |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
82 |
%GC |
65.4 |
Number of singletons |
33 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_005087055.1 | NC_016652_p11 | hypothetical protein | phrog_123 | tail terminator | connector | 1 | 7293 | 7724 |
| YP_005087069.1 | NC_016652_p25 | hypothetical protein | phrog_6071 | unknown function | unknown function | 1 | 22322 | 22531 |
| YP_005087088.1 | NC_016652_p44 | hypothetical protein | singleton | unknown function | unknown function | 1 | 34109 | 34450 |
| YP_005087046.1 | NC_016652_p2 | terminase large subunit | phrog_2 | terminase large subunit | head and packaging | 1 | 393 | 1919 |
| YP_005087052.1 | NC_016652_p8 | hypothetical protein | phrog_137 | head-tail adaptor Ad1 | connector | 1 | 6272 | 6640 |
| YP_005087081.1 | NC_016652_p37 | hypothetical protein | singleton | unknown function | unknown function | -1 | 29130 | 29963 |
| YP_005087124.1 | NC_016652_p80 | hypothetical protein | phrog_1467 | unknown function | unknown function | 1 | 47326 | 47904 |
| YP_005087060.1 | NC_016652_p16 | hypothetical protein | phrog_37902 | unknown function | unknown function | 1 | 11255 | 11623 |
| YP_005087100.1 | NC_016652_p56 | hypothetical protein | phrog_22 | thioredoxin domain | DNA, RNA and nucleotide metabolism | 1 | 38041 | 38379 |
| YP_005087082.1 | NC_016652_p38 | phage integrase | phrog_1 | integrase | integration and excision | -1 | 30324 | 31529 |
| YP_005087091.1 | NC_016652_p47 | hypothetical protein | singleton | unknown function | unknown function | 1 | 35560 | 35802 |
| YP_005087121.1 | NC_016652_p77 | hypothetical protein | singleton | unknown function | unknown function | 1 | 46180 | 46503 |
| YP_005087104.1 | NC_016652_p60 | hypothetical protein | singleton | unknown function | unknown function | 1 | 40526 | 40654 |
| YP_005087113.1 | NC_016652_p69 | hypothetical protein | singleton | unknown function | unknown function | 1 | 43044 | 43217 |
| YP_005087125.1 | NC_016652_p81 | hypothetical protein | phrog_2474 | MerR-like transcriptional regulator | transcription regulation | 1 | 47996 | 48220 |
| YP_005087057.1 | NC_016652_p13 | hypothetical protein | phrog_10356 | virion structural protein | head and packaging | 1 | 8876 | 9904 |
| YP_005087051.1 | NC_016652_p7 | hypothetical protein | phrog_2322 | head-tail connector protein | connector | 1 | 5849 | 6256 |
| YP_005087059.1 | NC_016652_p15 | hypothetical protein | singleton | unknown function | unknown function | 1 | 10968 | 11258 |
| YP_005087107.1 | NC_016652_p63 | hypothetical protein | singleton | unknown function | unknown function | 1 | 41201 | 41485 |
| YP_005087092.1 | NC_016652_p48 | hypothetical protein | singleton | unknown function | unknown function | 1 | 35799 | 36143 |
| YP_005087056.1 | NC_016652_p12 | main tail protein | phrog_476 | major tail protein | tail | 1 | 7795 | 8721 |
| YP_005087116.1 | NC_016652_p72 | calcineurin-like phosphoesterase family protein | phrog_547 | phosphoesterase | other | 1 | 44418 | 45047 |
| YP_005087048.1 | NC_016652_p4 | clp protease family protein | phrog_2976 | head maturation protease | head and packaging | 1 | 3228 | 4442 |
| YP_005087045.1 | NC_016652_p1 | hypothetical protein | phrog_1459 | terminase small subunit | head and packaging | 1 | 71 | 421 |
| YP_005087079.1 | NC_016652_p35 | excisionase | singleton | unknown function | unknown function | -1 | 28247 | 28975 |
| YP_005087077.1 | NC_016652_p33 | hypothetical protein | singleton | unknown function | unknown function | -1 | 27041 | 27175 |
| YP_005087047.1 | NC_016652_p3 | portal protein | phrog_113 | portal protein | head and packaging | 1 | 1933 | 3231 |
| YP_005087103.1 | NC_016652_p59 | hypothetical protein | phrog_1590 | unknown function | unknown function | 1 | 39789 | 40529 |
| YP_005087098.1 | NC_016652_p54 | hypothetical protein | singleton | unknown function | unknown function | 1 | 37704 | 37865 |
| YP_005087109.1 | NC_016652_p65 | hypothetical protein | singleton | unknown function | unknown function | 1 | 42102 | 42266 |
| YP_005087084.1 | NC_016652_p40 | hypothetical protein | phrog_19097 | transcriptional repressor | transcription regulation | -1 | 31979 | 32449 |
| YP_005087070.1 | NC_016652_p26 | holin | phrog_3798 | unknown function | unknown function | 1 | 22510 | 22854 |
| YP_005087108.1 | NC_016652_p64 | hypothetical protein | phrog_24393 | unknown function | unknown function | 1 | 41482 | 42105 |
| YP_005087110.1 | NC_016652_p66 | hypothetical protein | phrog_1573 | DNA methyltransferase | other | 1 | 42263 | 42595 |
| YP_005087062.1 | NC_016652_p18 | tape measure protein | phrog_4197 | tail length tape measure protein | tail | 1 | 12445 | 18258 |
| YP_005087115.1 | NC_016652_p71 | endonuclease | phrog_307 | endonuclease VII | DNA, RNA and nucleotide metabolism | 1 | 43984 | 44421 |
| YP_005087087.1 | NC_016652_p43 | antirepressor | phrog_130 | anti-repressor Ant | transcription regulation | 1 | 33255 | 34112 |
| YP_005087122.1 | NC_016652_p78 | hypothetical protein | singleton | unknown function | unknown function | 1 | 46570 | 46743 |
| YP_005087080.1 | NC_016652_p36 | hypothetical protein | singleton | unknown function | unknown function | -1 | 28972 | 29133 |
| YP_005087120.1 | NC_016652_p76 | hypothetical protein | singleton | unknown function | unknown function | 1 | 45773 | 46183 |
| YP_005087105.1 | NC_016652_p61 | hypothetical protein | phrog_478 | site-specific recombination directionality factor RDF | integration and excision | 1 | 40651 | 41043 |
| YP_005087066.1 | NC_016652_p22 | lysin | phrog_670 | endolysin | lysis | 1 | 21035 | 21745 |
| YP_005087123.1 | NC_016652_p79 | hypothetical protein | singleton | unknown function | unknown function | 1 | 46736 | 47323 |
| YP_005087096.1 | NC_016652_p52 | hypothetical protein | singleton | unknown function | unknown function | 1 | 37388 | 37504 |
| YP_005087076.1 | NC_016652_p32 | hypothetical protein | singleton | unknown function | unknown function | -1 | 26795 | 26953 |
| YP_005087078.1 | NC_016652_p34 | hypothetical protein | singleton | unknown function | unknown function | -1 | 27332 | 28216 |
| YP_005087049.1 | NC_016652_p5 | hypothetical protein | phrog_673 | head scaffolding protein | head and packaging | 1 | 4445 | 4885 |
| YP_005087054.1 | NC_016652_p10 | hypothetical protein | singleton | unknown function | unknown function | 1 | 6964 | 7293 |
| YP_005087065.1 | NC_016652_p21 | hypothetical protein | singleton | unknown function | unknown function | 1 | 20676 | 21038 |
| YP_005087117.1 | NC_016652_p73 | hypothetical protein | singleton | unknown function | unknown function | 1 | 45044 | 45262 |
| YP_005087086.1 | NC_016652_p42 | phage excisionase | phrog_66 | excisionase and transcriptional regulator | integration and excision | 1 | 33070 | 33258 |
| YP_005087075.1 | NC_016652_p31 | hypothetical protein | phrog_597 | DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 26559 | 26798 |
| YP_005087067.1 | NC_016652_p23 | holin | phrog_3428 | holin | lysis | 1 | 21745 | 22032 |
| YP_005087064.1 | NC_016652_p20 | phage tail protein | phrog_110 | minor tail protein | tail | 1 | 19089 | 20663 |
| YP_005087050.1 | NC_016652_p6 | main capsid protein | phrog_1650 | major head protein | head and packaging | 1 | 4914 | 5852 |
| YP_005087073.1 | NC_016652_p29 | hypothetical protein | phrog_37491 | unknown function | unknown function | 1 | 25247 | 26131 |
| YP_005087083.1 | NC_016652_p39 | hypothetical protein | phrog_87 | metallo-protease | other | -1 | 31546 | 31992 |
| YP_005087068.1 | NC_016652_p24 | hypothetical protein | phrog_4511 | unknown function | unknown function | 1 | 22071 | 22325 |
| YP_005087085.1 | NC_016652_p41 | hypothetical protein | phrog_9103 | transcriptional repressor | transcription regulation | 1 | 32596 | 32826 |
| YP_005087101.1 | NC_016652_p57 | exonuclease | phrog_149 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 38376 | 39203 |
| YP_005087053.1 | NC_016652_p9 | hypothetical protein | phrog_501 | head closure Hc1 | connector | 1 | 6642 | 6971 |
| YP_005087089.1 | NC_016652_p45 | hypothetical protein | singleton | unknown function | unknown function | -1 | 34666 | 35022 |
| YP_005087072.1 | NC_016652_p28 | hypothetical protein | phrog_1718 | tail protein | tail | 1 | 23565 | 25247 |
| YP_005087061.1 | NC_016652_p17 | hypothetical protein | phrog_2624 | tail assembly chaperone | tail | 1 | 11626 | 12441 |
| YP_005087095.1 | NC_016652_p51 | DNA polymerase III, beta subunit | phrog_12598 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 36591 | 37391 |
| YP_005087093.1 | NC_016652_p49 | hypothetical protein | phrog_26296 | unknown function | unknown function | 1 | 36140 | 36403 |
| YP_005087094.1 | NC_016652_p50 | hypothetical protein | singleton | unknown function | unknown function | 1 | 36400 | 36579 |
| YP_005087090.1 | NC_016652_p46 | hypothetical protein | singleton | unknown function | unknown function | 1 | 35131 | 35262 |
| YP_005087097.1 | NC_016652_p53 | hypothetical protein | singleton | unknown function | unknown function | 1 | 37501 | 37704 |
| YP_005087112.1 | NC_016652_p68 | hypothetical protein | phrog_27856 | unknown function | unknown function | 1 | 42772 | 43047 |
| YP_005087071.1 | NC_016652_p27 | hypothetical protein | phrog_12076 | unknown function | unknown function | 1 | 22841 | 23572 |
| YP_005087119.1 | NC_016652_p75 | hypothetical protein | singleton | unknown function | unknown function | 1 | 45618 | 45776 |
| YP_005087063.1 | NC_016652_p19 | phage tail protein | phrog_106 | minor tail protein | tail | 1 | 18255 | 19085 |
| YP_005087126.1 | NC_016652_p82 | hypothetical protein | phrog_1808 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 48914 | 49288 |
| YP_005087111.1 | NC_016652_p67 | hypothetical protein | singleton | unknown function | unknown function | -1 | 42597 | 42773 |
| YP_005087099.1 | NC_016652_p55 | hypothetical protein | singleton | unknown function | unknown function | 1 | 37862 | 38044 |
| YP_005087074.1 | NC_016652_p30 | hypothetical protein | phrog_6558 | unknown function | unknown function | -1 | 26290 | 26562 |
| YP_005087114.1 | NC_016652_p70 | hypothetical protein | phrog_3926 | replication initiation protein | DNA, RNA and nucleotide metabolism | 1 | 43365 | 43724 |
| YP_005087102.1 | NC_016652_p58 | hypothetical protein | phrog_11517 | unknown function | unknown function | 1 | 39206 | 39829 |
| YP_005087106.1 | NC_016652_p62 | hypothetical protein | singleton | unknown function | unknown function | 1 | 41040 | 41204 |
| YP_005087118.1 | NC_016652_p74 | hypothetical protein | singleton | unknown function | unknown function | 1 | 45259 | 45621 |
| YP_005087058.1 | NC_016652_p14 | hypothetical protein | singleton | unknown function | unknown function | 1 | 9904 | 10818 |