Genomic map of Rhodococcus phage REQ2 (NC_016652)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_016652
Definition
Rhodococcus phage REQ2, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae.
DB of origin
REFSEQ
Length
49330
Host Name
Rhodococcus equi
Host domain
Bacteria
Is prophage?
undef
Number of proteins
82
%GC
65.4
Number of singletons
33
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_005087055.1 NC_016652_p11 hypothetical protein phrog_123 tail terminator connector 1 7293 7724
YP_005087069.1 NC_016652_p25 hypothetical protein phrog_6071 unknown function unknown function 1 22322 22531
YP_005087088.1 NC_016652_p44 hypothetical protein singleton unknown function unknown function 1 34109 34450
YP_005087046.1 NC_016652_p2 terminase large subunit phrog_2 terminase large subunit head and packaging 1 393 1919
YP_005087052.1 NC_016652_p8 hypothetical protein phrog_137 head-tail adaptor Ad1 connector 1 6272 6640
YP_005087081.1 NC_016652_p37 hypothetical protein singleton unknown function unknown function -1 29130 29963
YP_005087124.1 NC_016652_p80 hypothetical protein phrog_1467 unknown function unknown function 1 47326 47904
YP_005087060.1 NC_016652_p16 hypothetical protein phrog_37902 unknown function unknown function 1 11255 11623
YP_005087100.1 NC_016652_p56 hypothetical protein phrog_22 thioredoxin domain DNA, RNA and nucleotide metabolism 1 38041 38379
YP_005087082.1 NC_016652_p38 phage integrase phrog_1 integrase integration and excision -1 30324 31529
YP_005087091.1 NC_016652_p47 hypothetical protein singleton unknown function unknown function 1 35560 35802
YP_005087121.1 NC_016652_p77 hypothetical protein singleton unknown function unknown function 1 46180 46503
YP_005087104.1 NC_016652_p60 hypothetical protein singleton unknown function unknown function 1 40526 40654
YP_005087113.1 NC_016652_p69 hypothetical protein singleton unknown function unknown function 1 43044 43217
YP_005087125.1 NC_016652_p81 hypothetical protein phrog_2474 MerR-like transcriptional regulator transcription regulation 1 47996 48220
YP_005087057.1 NC_016652_p13 hypothetical protein phrog_10356 virion structural protein head and packaging 1 8876 9904
YP_005087051.1 NC_016652_p7 hypothetical protein phrog_2322 head-tail connector protein connector 1 5849 6256
YP_005087059.1 NC_016652_p15 hypothetical protein singleton unknown function unknown function 1 10968 11258
YP_005087107.1 NC_016652_p63 hypothetical protein singleton unknown function unknown function 1 41201 41485
YP_005087092.1 NC_016652_p48 hypothetical protein singleton unknown function unknown function 1 35799 36143
YP_005087056.1 NC_016652_p12 main tail protein phrog_476 major tail protein tail 1 7795 8721
YP_005087116.1 NC_016652_p72 calcineurin-like phosphoesterase family protein phrog_547 phosphoesterase other 1 44418 45047
YP_005087048.1 NC_016652_p4 clp protease family protein phrog_2976 head maturation protease head and packaging 1 3228 4442
YP_005087045.1 NC_016652_p1 hypothetical protein phrog_1459 terminase small subunit head and packaging 1 71 421
YP_005087079.1 NC_016652_p35 excisionase singleton unknown function unknown function -1 28247 28975
YP_005087077.1 NC_016652_p33 hypothetical protein singleton unknown function unknown function -1 27041 27175
YP_005087047.1 NC_016652_p3 portal protein phrog_113 portal protein head and packaging 1 1933 3231
YP_005087103.1 NC_016652_p59 hypothetical protein phrog_1590 unknown function unknown function 1 39789 40529
YP_005087098.1 NC_016652_p54 hypothetical protein singleton unknown function unknown function 1 37704 37865
YP_005087109.1 NC_016652_p65 hypothetical protein singleton unknown function unknown function 1 42102 42266
YP_005087084.1 NC_016652_p40 hypothetical protein phrog_19097 transcriptional repressor transcription regulation -1 31979 32449
YP_005087070.1 NC_016652_p26 holin phrog_3798 unknown function unknown function 1 22510 22854
YP_005087108.1 NC_016652_p64 hypothetical protein phrog_24393 unknown function unknown function 1 41482 42105
YP_005087110.1 NC_016652_p66 hypothetical protein phrog_1573 DNA methyltransferase other 1 42263 42595
YP_005087062.1 NC_016652_p18 tape measure protein phrog_4197 tail length tape measure protein tail 1 12445 18258
YP_005087115.1 NC_016652_p71 endonuclease phrog_307 endonuclease VII DNA, RNA and nucleotide metabolism 1 43984 44421
YP_005087087.1 NC_016652_p43 antirepressor phrog_130 anti-repressor Ant transcription regulation 1 33255 34112
YP_005087122.1 NC_016652_p78 hypothetical protein singleton unknown function unknown function 1 46570 46743
YP_005087080.1 NC_016652_p36 hypothetical protein singleton unknown function unknown function -1 28972 29133
YP_005087120.1 NC_016652_p76 hypothetical protein singleton unknown function unknown function 1 45773 46183
YP_005087105.1 NC_016652_p61 hypothetical protein phrog_478 site-specific recombination directionality factor RDF integration and excision 1 40651 41043
YP_005087066.1 NC_016652_p22 lysin phrog_670 endolysin lysis 1 21035 21745
YP_005087123.1 NC_016652_p79 hypothetical protein singleton unknown function unknown function 1 46736 47323
YP_005087096.1 NC_016652_p52 hypothetical protein singleton unknown function unknown function 1 37388 37504
YP_005087076.1 NC_016652_p32 hypothetical protein singleton unknown function unknown function -1 26795 26953
YP_005087078.1 NC_016652_p34 hypothetical protein singleton unknown function unknown function -1 27332 28216
YP_005087049.1 NC_016652_p5 hypothetical protein phrog_673 head scaffolding protein head and packaging 1 4445 4885
YP_005087054.1 NC_016652_p10 hypothetical protein singleton unknown function unknown function 1 6964 7293
YP_005087065.1 NC_016652_p21 hypothetical protein singleton unknown function unknown function 1 20676 21038
YP_005087117.1 NC_016652_p73 hypothetical protein singleton unknown function unknown function 1 45044 45262
YP_005087086.1 NC_016652_p42 phage excisionase phrog_66 excisionase and transcriptional regulator integration and excision 1 33070 33258
YP_005087075.1 NC_016652_p31 hypothetical protein phrog_597 DNA binding protein DNA, RNA and nucleotide metabolism -1 26559 26798
YP_005087067.1 NC_016652_p23 holin phrog_3428 holin lysis 1 21745 22032
YP_005087064.1 NC_016652_p20 phage tail protein phrog_110 minor tail protein tail 1 19089 20663
YP_005087050.1 NC_016652_p6 main capsid protein phrog_1650 major head protein head and packaging 1 4914 5852
YP_005087073.1 NC_016652_p29 hypothetical protein phrog_37491 unknown function unknown function 1 25247 26131
YP_005087083.1 NC_016652_p39 hypothetical protein phrog_87 metallo-protease other -1 31546 31992
YP_005087068.1 NC_016652_p24 hypothetical protein phrog_4511 unknown function unknown function 1 22071 22325
YP_005087085.1 NC_016652_p41 hypothetical protein phrog_9103 transcriptional repressor transcription regulation 1 32596 32826
YP_005087101.1 NC_016652_p57 exonuclease phrog_149 exonuclease DNA, RNA and nucleotide metabolism 1 38376 39203
YP_005087053.1 NC_016652_p9 hypothetical protein phrog_501 head closure Hc1 connector 1 6642 6971
YP_005087089.1 NC_016652_p45 hypothetical protein singleton unknown function unknown function -1 34666 35022
YP_005087072.1 NC_016652_p28 hypothetical protein phrog_1718 tail protein tail 1 23565 25247
YP_005087061.1 NC_016652_p17 hypothetical protein phrog_2624 tail assembly chaperone tail 1 11626 12441
YP_005087095.1 NC_016652_p51 DNA polymerase III, beta subunit phrog_12598 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 36591 37391
YP_005087093.1 NC_016652_p49 hypothetical protein phrog_26296 unknown function unknown function 1 36140 36403
YP_005087094.1 NC_016652_p50 hypothetical protein singleton unknown function unknown function 1 36400 36579
YP_005087090.1 NC_016652_p46 hypothetical protein singleton unknown function unknown function 1 35131 35262
YP_005087097.1 NC_016652_p53 hypothetical protein singleton unknown function unknown function 1 37501 37704
YP_005087112.1 NC_016652_p68 hypothetical protein phrog_27856 unknown function unknown function 1 42772 43047
YP_005087071.1 NC_016652_p27 hypothetical protein phrog_12076 unknown function unknown function 1 22841 23572
YP_005087119.1 NC_016652_p75 hypothetical protein singleton unknown function unknown function 1 45618 45776
YP_005087063.1 NC_016652_p19 phage tail protein phrog_106 minor tail protein tail 1 18255 19085
YP_005087126.1 NC_016652_p82 hypothetical protein phrog_1808 HNH endonuclease DNA, RNA and nucleotide metabolism 1 48914 49288
YP_005087111.1 NC_016652_p67 hypothetical protein singleton unknown function unknown function -1 42597 42773
YP_005087099.1 NC_016652_p55 hypothetical protein singleton unknown function unknown function 1 37862 38044
YP_005087074.1 NC_016652_p30 hypothetical protein phrog_6558 unknown function unknown function -1 26290 26562
YP_005087114.1 NC_016652_p70 hypothetical protein phrog_3926 replication initiation protein DNA, RNA and nucleotide metabolism 1 43365 43724
YP_005087102.1 NC_016652_p58 hypothetical protein phrog_11517 unknown function unknown function 1 39206 39829
YP_005087106.1 NC_016652_p62 hypothetical protein singleton unknown function unknown function 1 41040 41204
YP_005087118.1 NC_016652_p74 hypothetical protein singleton unknown function unknown function 1 45259 45621
YP_005087058.1 NC_016652_p14 hypothetical protein singleton unknown function unknown function 1 9904 10818