| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_016654 |
Definition |
Rhodococcus phage REQ3, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae. |
DB of origin |
REFSEQ |
Length |
39474 |
Host Name |
Rhodococcus equi |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
60 |
%GC |
65.94 |
Number of singletons |
3 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_005087233.1 | NC_016654_p41 | hypothetical protein | phrog_33857 | unknown function | unknown function | 1 | 23284 | 23496 |
| YP_005087226.1 | NC_016654_p34 | hypothetical protein | phrog_5536 | unknown function | unknown function | 1 | 15686 | 16183 |
| YP_005087200.1 | NC_016654_p8 | endonuclease | phrog_37644 | unknown function | unknown function | 1 | 3539 | 3811 |
| YP_005087193.1 | NC_016654_p1 | phage integrase | phrog_1 | integrase | integration and excision | -1 | 82 | 1320 |
| YP_005087250.1 | NC_016654_p58 | hypothetical protein | phrog_644 | unknown function | unknown function | 1 | 37388 | 37825 |
| YP_005087198.1 | NC_016654_p6 | hypothetical protein | phrog_3642 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 2988 | 3281 |
| YP_005087229.1 | NC_016654_p37 | minor capsid protein | phrog_581 | minor head protein | head and packaging | 1 | 19080 | 20858 |
| YP_005087214.1 | NC_016654_p22 | hypothetical protein | phrog_24393 | unknown function | unknown function | 1 | 9784 | 10266 |
| YP_005087227.1 | NC_016654_p35 | terminase large subunit | phrog_2 | terminase large subunit | head and packaging | 1 | 16180 | 17478 |
| YP_005087235.1 | NC_016654_p43 | hypothetical protein | phrog_3881 | head-tail connector protein | connector | 1 | 23906 | 24238 |
| YP_005087207.1 | NC_016654_p15 | hypothetical protein | phrog_32926 | unknown function | unknown function | 1 | 7466 | 7960 |
| YP_005087195.1 | NC_016654_p3 | hypothetical protein | singleton | unknown function | unknown function | -1 | 1827 | 2312 |
| YP_005087210.1 | NC_016654_p18 | hypothetical protein | phrog_33153 | unknown function | unknown function | 1 | 8801 | 8923 |
| YP_005087223.1 | NC_016654_p31 | hypothetical protein | phrog_1126 | unknown function | unknown function | 1 | 14457 | 14756 |
| YP_005087211.1 | NC_016654_p19 | hypothetical protein | phrog_244 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 8920 | 9282 |
| YP_005087240.1 | NC_016654_p48 | tape measure protein | phrog_10780 | tail length tape measure protein | tail | 1 | 26599 | 31356 |
| YP_005087213.1 | NC_016654_p21 | hypothetical protein | phrog_2021 | unknown function | unknown function | 1 | 9467 | 9787 |
| YP_005087199.1 | NC_016654_p7 | hypothetical protein | phrog_32605 | unknown function | unknown function | 1 | 3278 | 3481 |
| YP_005087249.1 | NC_016654_p57 | hypothetical protein | phrog_1718 | tail protein | tail | 1 | 36958 | 37371 |
| YP_005087247.1 | NC_016654_p55 | hypothetical protein | phrog_1397 | unknown function | unknown function | 1 | 35929 | 36294 |
| YP_005087208.1 | NC_016654_p16 | hypothetical protein | phrog_26296 | unknown function | unknown function | 1 | 8188 | 8457 |
| YP_005087206.1 | NC_016654_p14 | hypothetical protein | phrog_1882 | unknown function | unknown function | 1 | 6642 | 7469 |
| YP_005087225.1 | NC_016654_p33 | hypothetical protein | phrog_28863 | unknown function | unknown function | 1 | 15461 | 15646 |
| YP_005087232.1 | NC_016654_p40 | hypothetical protein | phrog_10541 | unknown function | unknown function | 1 | 22668 | 23072 |
| YP_005087243.1 | NC_016654_p51 | hypothetical protein | phrog_352 | minor tail protein | tail | 1 | 33944 | 34471 |
| YP_005087202.1 | NC_016654_p10 | endonuclease | phrog_826 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 4829 | 5143 |
| YP_005087209.1 | NC_016654_p17 | hypothetical protein | phrog_33397 | unknown function | unknown function | 1 | 8454 | 8804 |
| YP_005087236.1 | NC_016654_p44 | hypothetical protein | phrog_5 | tail completion or Neck1 protein | connector | 1 | 24247 | 24573 |
| YP_005087234.1 | NC_016654_p42 | hypothetical protein | phrog_541 | head-tail adaptor | connector | 1 | 23499 | 23909 |
| YP_005087221.1 | NC_016654_p29 | hypothetical protein | phrog_33951 | unknown function | unknown function | 1 | 13202 | 13534 |
| YP_005087248.1 | NC_016654_p56 | hypothetical protein | phrog_12076 | unknown function | unknown function | 1 | 36296 | 36955 |
| YP_005087194.1 | NC_016654_p2 | hypothetical protein | phrog_22858 | unknown function | unknown function | -1 | 1325 | 1852 |
| YP_005087252.1 | NC_016654_p60 | hypothetical protein | phrog_22486 | unknown function | unknown function | 1 | 38942 | 39082 |
| YP_005087197.1 | NC_016654_p5 | hypothetical protein | singleton | unknown function | unknown function | -1 | 2701 | 2832 |
| YP_005087224.1 | NC_016654_p32 | tail fibre | phrog_32325 | tail protein | tail | 1 | 14746 | 15459 |
| YP_005087231.1 | NC_016654_p39 | major capsid protein | phrog_212 | major head protein | head and packaging | 1 | 21619 | 22623 |
| YP_005087218.1 | NC_016654_p26 | single stranded DNA binding protein | phrog_44 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 12169 | 12615 |
| YP_005087201.1 | NC_016654_p9 | endonuclease | phrog_434 | RecE-like recombination exonuclease | DNA, RNA and nucleotide metabolism | 1 | 3808 | 4743 |
| YP_005087237.1 | NC_016654_p45 | hypothetical protein | phrog_2595 | head-tail connector protein | connector | 1 | 24570 | 25019 |
| YP_005087222.1 | NC_016654_p30 | hypothetical protein | phrog_908 | unknown function | unknown function | 1 | 13527 | 14201 |
| YP_005087205.1 | NC_016654_p13 | hypothetical protein | phrog_8273 | unknown function | unknown function | 1 | 6322 | 6642 |
| YP_005087251.1 | NC_016654_p59 | hypothetical protein | phrog_32032 | unknown function | unknown function | 1 | 37841 | 38932 |
| YP_005087246.1 | NC_016654_p54 | hypothetical protein | phrog_4026 | minor tail protein | tail | 1 | 35525 | 35953 |
| YP_005087204.1 | NC_016654_p12 | hypothetical protein | phrog_21939 | unknown function | unknown function | 1 | 5979 | 6275 |
| YP_005087242.1 | NC_016654_p50 | minor tail protein | phrog_110 | minor tail protein | tail | 1 | 32274 | 33917 |
| YP_005087196.1 | NC_016654_p4 | hypothetical protein | phrog_5301 | transcriptional repressor | transcription regulation | -1 | 2294 | 2725 |
| YP_005087217.1 | NC_016654_p25 | transcription factor | phrog_1492 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 11558 | 12172 |
| YP_005087245.1 | NC_016654_p53 | hypothetical protein | singleton | unknown function | unknown function | -1 | 35248 | 35424 |
| YP_005087230.1 | NC_016654_p38 | hypothetical protein | phrog_25524 | unknown function | unknown function | 1 | 21010 | 21609 |
| YP_005087203.1 | NC_016654_p11 | Rect-like protein | phrog_561 | RecT-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 5140 | 5982 |
| YP_005087238.1 | NC_016654_p46 | hypothetical protein | phrog_3884 | major tail protein | tail | 1 | 25028 | 25765 |
| YP_005087216.1 | NC_016654_p24 | hypothetical protein | phrog_20755 | unknown function | unknown function | 1 | 11083 | 11430 |
| YP_005087239.1 | NC_016654_p47 | hypothetical protein | phrog_3860 | tail assembly chaperone | tail | 1 | 25838 | 26401 |
| YP_005087228.1 | NC_016654_p36 | portal protein | phrog_533 | portal protein | head and packaging | 1 | 17475 | 19076 |
| YP_005087219.1 | NC_016654_p27 | hypothetical protein | phrog_2021 | unknown function | unknown function | 1 | 12625 | 12996 |
| YP_005087241.1 | NC_016654_p49 | minor tail protein | phrog_106 | minor tail protein | tail | 1 | 31366 | 32277 |
| YP_005087212.1 | NC_016654_p20 | hypothetical protein | phrog_38015 | unknown function | unknown function | 1 | 9282 | 9470 |
| YP_005087220.1 | NC_016654_p28 | hypothetical protein | phrog_33761 | unknown function | unknown function | 1 | 12993 | 13205 |
| YP_005087215.1 | NC_016654_p23 | endonuclease | phrog_4160 | unknown function | unknown function | 1 | 10266 | 11021 |
| YP_005087244.1 | NC_016654_p52 | lysin | phrog_6007 | endolysin | lysis | 1 | 34473 | 35225 |