Genomic map of Rhodococcus phage REQ3 (NC_016654)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_016654
Definition
Rhodococcus phage REQ3, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae.
DB of origin
REFSEQ
Length
39474
Host Name
Rhodococcus equi
Host domain
Bacteria
Is prophage?
undef
Number of proteins
60
%GC
65.94
Number of singletons
3
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_005087233.1 NC_016654_p41 hypothetical protein phrog_33857 unknown function unknown function 1 23284 23496
YP_005087226.1 NC_016654_p34 hypothetical protein phrog_5536 unknown function unknown function 1 15686 16183
YP_005087200.1 NC_016654_p8 endonuclease phrog_37644 unknown function unknown function 1 3539 3811
YP_005087193.1 NC_016654_p1 phage integrase phrog_1 integrase integration and excision -1 82 1320
YP_005087250.1 NC_016654_p58 hypothetical protein phrog_644 unknown function unknown function 1 37388 37825
YP_005087198.1 NC_016654_p6 hypothetical protein phrog_3642 HTH DNA binding protein DNA, RNA and nucleotide metabolism 1 2988 3281
YP_005087229.1 NC_016654_p37 minor capsid protein phrog_581 minor head protein head and packaging 1 19080 20858
YP_005087214.1 NC_016654_p22 hypothetical protein phrog_24393 unknown function unknown function 1 9784 10266
YP_005087227.1 NC_016654_p35 terminase large subunit phrog_2 terminase large subunit head and packaging 1 16180 17478
YP_005087235.1 NC_016654_p43 hypothetical protein phrog_3881 head-tail connector protein connector 1 23906 24238
YP_005087207.1 NC_016654_p15 hypothetical protein phrog_32926 unknown function unknown function 1 7466 7960
YP_005087195.1 NC_016654_p3 hypothetical protein singleton unknown function unknown function -1 1827 2312
YP_005087210.1 NC_016654_p18 hypothetical protein phrog_33153 unknown function unknown function 1 8801 8923
YP_005087223.1 NC_016654_p31 hypothetical protein phrog_1126 unknown function unknown function 1 14457 14756
YP_005087211.1 NC_016654_p19 hypothetical protein phrog_244 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 8920 9282
YP_005087240.1 NC_016654_p48 tape measure protein phrog_10780 tail length tape measure protein tail 1 26599 31356
YP_005087213.1 NC_016654_p21 hypothetical protein phrog_2021 unknown function unknown function 1 9467 9787
YP_005087199.1 NC_016654_p7 hypothetical protein phrog_32605 unknown function unknown function 1 3278 3481
YP_005087249.1 NC_016654_p57 hypothetical protein phrog_1718 tail protein tail 1 36958 37371
YP_005087247.1 NC_016654_p55 hypothetical protein phrog_1397 unknown function unknown function 1 35929 36294
YP_005087208.1 NC_016654_p16 hypothetical protein phrog_26296 unknown function unknown function 1 8188 8457
YP_005087206.1 NC_016654_p14 hypothetical protein phrog_1882 unknown function unknown function 1 6642 7469
YP_005087225.1 NC_016654_p33 hypothetical protein phrog_28863 unknown function unknown function 1 15461 15646
YP_005087232.1 NC_016654_p40 hypothetical protein phrog_10541 unknown function unknown function 1 22668 23072
YP_005087243.1 NC_016654_p51 hypothetical protein phrog_352 minor tail protein tail 1 33944 34471
YP_005087202.1 NC_016654_p10 endonuclease phrog_826 HNH endonuclease DNA, RNA and nucleotide metabolism 1 4829 5143
YP_005087209.1 NC_016654_p17 hypothetical protein phrog_33397 unknown function unknown function 1 8454 8804
YP_005087236.1 NC_016654_p44 hypothetical protein phrog_5 tail completion or Neck1 protein connector 1 24247 24573
YP_005087234.1 NC_016654_p42 hypothetical protein phrog_541 head-tail adaptor connector 1 23499 23909
YP_005087221.1 NC_016654_p29 hypothetical protein phrog_33951 unknown function unknown function 1 13202 13534
YP_005087248.1 NC_016654_p56 hypothetical protein phrog_12076 unknown function unknown function 1 36296 36955
YP_005087194.1 NC_016654_p2 hypothetical protein phrog_22858 unknown function unknown function -1 1325 1852
YP_005087252.1 NC_016654_p60 hypothetical protein phrog_22486 unknown function unknown function 1 38942 39082
YP_005087197.1 NC_016654_p5 hypothetical protein singleton unknown function unknown function -1 2701 2832
YP_005087224.1 NC_016654_p32 tail fibre phrog_32325 tail protein tail 1 14746 15459
YP_005087231.1 NC_016654_p39 major capsid protein phrog_212 major head protein head and packaging 1 21619 22623
YP_005087218.1 NC_016654_p26 single stranded DNA binding protein phrog_44 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 12169 12615
YP_005087201.1 NC_016654_p9 endonuclease phrog_434 RecE-like recombination exonuclease DNA, RNA and nucleotide metabolism 1 3808 4743
YP_005087237.1 NC_016654_p45 hypothetical protein phrog_2595 head-tail connector protein connector 1 24570 25019
YP_005087222.1 NC_016654_p30 hypothetical protein phrog_908 unknown function unknown function 1 13527 14201
YP_005087205.1 NC_016654_p13 hypothetical protein phrog_8273 unknown function unknown function 1 6322 6642
YP_005087251.1 NC_016654_p59 hypothetical protein phrog_32032 unknown function unknown function 1 37841 38932
YP_005087246.1 NC_016654_p54 hypothetical protein phrog_4026 minor tail protein tail 1 35525 35953
YP_005087204.1 NC_016654_p12 hypothetical protein phrog_21939 unknown function unknown function 1 5979 6275
YP_005087242.1 NC_016654_p50 minor tail protein phrog_110 minor tail protein tail 1 32274 33917
YP_005087196.1 NC_016654_p4 hypothetical protein phrog_5301 transcriptional repressor transcription regulation -1 2294 2725
YP_005087217.1 NC_016654_p25 transcription factor phrog_1492 HNH endonuclease DNA, RNA and nucleotide metabolism 1 11558 12172
YP_005087245.1 NC_016654_p53 hypothetical protein singleton unknown function unknown function -1 35248 35424
YP_005087230.1 NC_016654_p38 hypothetical protein phrog_25524 unknown function unknown function 1 21010 21609
YP_005087203.1 NC_016654_p11 Rect-like protein phrog_561 RecT-like ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 5140 5982
YP_005087238.1 NC_016654_p46 hypothetical protein phrog_3884 major tail protein tail 1 25028 25765
YP_005087216.1 NC_016654_p24 hypothetical protein phrog_20755 unknown function unknown function 1 11083 11430
YP_005087239.1 NC_016654_p47 hypothetical protein phrog_3860 tail assembly chaperone tail 1 25838 26401
YP_005087228.1 NC_016654_p36 portal protein phrog_533 portal protein head and packaging 1 17475 19076
YP_005087219.1 NC_016654_p27 hypothetical protein phrog_2021 unknown function unknown function 1 12625 12996
YP_005087241.1 NC_016654_p49 minor tail protein phrog_106 minor tail protein tail 1 31366 32277
YP_005087212.1 NC_016654_p20 hypothetical protein phrog_38015 unknown function unknown function 1 9282 9470
YP_005087220.1 NC_016654_p28 hypothetical protein phrog_33761 unknown function unknown function 1 12993 13205
YP_005087215.1 NC_016654_p23 endonuclease phrog_4160 unknown function unknown function 1 10266 11021
YP_005087244.1 NC_016654_p52 lysin phrog_6007 endolysin lysis 1 34473 35225