Genomic map of Rhodococcus phage REQ1 (NC_016655)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_016655
Definition
Rhodococcus phage REQ1, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae.
DB of origin
REFSEQ
Length
51342
Host Name
Rhodococcus equi
Host domain
Bacteria
Is prophage?
undef
Number of proteins
85
%GC
66.32
Number of singletons
54
Number of paralogs
2

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_005087327.1 NC_016655_p75 hypothetical protein phrog_11991 unknown function unknown function 1 37187 37687
YP_005087273.1 NC_016655_p21 hypothetical protein phrog_38040 unknown function unknown function -1 6695 6889
YP_005087272.1 NC_016655_p20 hypothetical protein singleton unknown function unknown function -1 6356 6682
YP_005087275.1 NC_016655_p23 hypothetical protein singleton unknown function unknown function -1 9063 9185
YP_005087285.1 NC_016655_p33 hypothetical protein singleton unknown function unknown function 1 13475 13741
YP_005087324.1 NC_016655_p72 hypothetical protein phrog_16194 tail protein tail 1 36167 36499
YP_005087258.1 NC_016655_p6 hypothetical protein singleton unknown function unknown function -1 1505 1936
YP_005087281.1 NC_016655_p29 hypothetical protein phrog_1333 unknown function unknown function 1 11628 12131
YP_005087330.1 NC_016655_p78 tape measure protein phrog_58 tail length tape measure protein tail 1 38584 42927
YP_005087329.1 NC_016655_p77 hypothetical protein phrog_32980 unknown function unknown function 1 38218 38499
YP_005087289.1 NC_016655_p37 hypothetical protein singleton unknown function unknown function 1 15320 15448
YP_005087263.1 NC_016655_p11 hypothetical protein singleton unknown function unknown function -1 3422 3643
YP_005087291.1 NC_016655_p39 hypothetical protein singleton unknown function unknown function 1 16226 16381
YP_005087320.1 NC_016655_p68 portal protein phrog_12 portal protein head and packaging 1 31213 32679
YP_005087286.1 NC_016655_p34 hypothetical protein phrog_236 nucleotide kinase other 1 13849 14694
YP_005087312.1 NC_016655_p60 hypothetical protein singleton unknown function unknown function 1 23031 23159
YP_005087305.1 NC_016655_p53 hypothetical protein singleton unknown function unknown function 1 20635 21171
YP_005087314.1 NC_016655_p62 hypothetical protein phrog_23653 unknown function unknown function 1 25446 26012
YP_005087262.1 NC_016655_p10 hypothetical protein singleton unknown function unknown function -1 2999 3400
YP_005087333.1 NC_016655_p81 hypothetical protein singleton unknown function unknown function 1 48201 49109
YP_005087276.1 NC_016655_p24 hypothetical protein singleton unknown function unknown function 1 9172 9510
YP_005087269.1 NC_016655_p17 hypothetical protein singleton unknown function unknown function -1 4656 4937
YP_005087259.1 NC_016655_p7 hypothetical protein phrog_3908 unknown function unknown function -1 1996 2205
YP_005087290.1 NC_016655_p38 hypothetical protein phrog_1674 exonuclease DNA, RNA and nucleotide metabolism 1 15432 16226
YP_005087331.1 NC_016655_p79 hypothetical protein singleton unknown function unknown function 1 42994 46974
YP_005087279.1 NC_016655_p27 hypothetical protein singleton unknown function unknown function 1 10904 11272
YP_005087328.1 NC_016655_p76 hypothetical protein phrog_344 tail assembly chaperone tail 1 37805 38203
YP_005087261.1 NC_016655_p9 hypothetical protein singleton unknown function unknown function -1 2656 2994
YP_005087307.1 NC_016655_p55 hypothetical protein singleton unknown function unknown function 1 21420 21554
YP_005087292.1 NC_016655_p40 hypothetical protein singleton unknown function unknown function -1 16431 16550
YP_005087267.1 NC_016655_p15 hypothetical protein singleton unknown function unknown function -1 4232 4405
YP_005087326.1 NC_016655_p74 hypothetical protein phrog_4574 major tail protein tail 1 36756 37172
YP_005087300.1 NC_016655_p48 hypothetical protein singleton unknown function unknown function 1 18723 18944
YP_005087323.1 NC_016655_p71 hypothetical protein phrog_17840 tail terminator connector 1 35723 36151
YP_005087294.1 NC_016655_p42 hypothetical protein singleton unknown function unknown function 1 17322 17645
YP_005087270.1 NC_016655_p18 hypothetical protein phrog_1221 unknown function unknown function -1 5032 6081
YP_005087306.1 NC_016655_p54 hypothetical protein phrog_5984 unknown function unknown function 1 21146 21418
YP_005087337.1 NC_016655_p85 hypothetical protein singleton unknown function unknown function 1 50910 51272
YP_005087278.1 NC_016655_p26 hypothetical protein singleton unknown function unknown function -1 10526 10873
YP_005087318.1 NC_016655_p66 terminase large subunit phrog_9 terminase large subunit head and packaging 1 29500 31053
YP_005087334.1 NC_016655_p82 recombination endonuclease phrog_2914 endonuclease VII DNA, RNA and nucleotide metabolism 1 49241 49534
YP_005087260.1 NC_016655_p8 hypothetical protein singleton unknown function unknown function -1 2198 2656
YP_005087257.1 NC_016655_p5 hypothetical protein singleton unknown function unknown function -1 1258 1500
YP_005087253.1 NC_016655_p1 hypothetical protein phrog_36262 unknown function unknown function -1 10 372
YP_005087336.1 NC_016655_p84 hypothetical protein singleton unknown function unknown function 1 50638 50913
YP_005087284.1 NC_016655_p32 hypothetical protein singleton unknown function unknown function 1 12699 13478
YP_005087325.1 NC_016655_p73 hypothetical protein singleton unknown function unknown function 1 36499 36750
YP_005087317.1 NC_016655_p65 hypothetical protein singleton unknown function unknown function 1 29132 29488
YP_005087288.1 NC_016655_p36 hypothetical protein singleton unknown function unknown function 1 14905 15228
YP_005087280.1 NC_016655_p28 hypothetical protein phrog_762 unknown function unknown function 1 11269 11631
YP_005087302.1 NC_016655_p50 hypothetical protein phrog_10893 unknown function unknown function 1 19171 19650
YP_005087313.1 NC_016655_p61 primase/polymerase singleton unknown function unknown function 1 23174 25267
YP_005087266.1 NC_016655_p14 hypothetical protein singleton unknown function unknown function -1 4041 4235
YP_005087321.1 NC_016655_p69 capsid protein phrog_10 major head protein head and packaging 1 32710 35031
YP_005087254.1 NC_016655_p2 hypothetical protein singleton unknown function unknown function -1 386 535
YP_005087265.1 NC_016655_p13 hypothetical protein singleton unknown function unknown function -1 3835 4035
YP_005087283.1 NC_016655_p31 hypothetical protein singleton unknown function unknown function 1 12457 12597
YP_005087287.1 NC_016655_p35 hypothetical protein singleton unknown function unknown function 1 14687 14908
YP_005087309.1 NC_016655_p57 hypothetical protein singleton unknown function unknown function 1 21996 22457
YP_005087295.1 NC_016655_p43 hypothetical protein singleton unknown function unknown function 1 17648 17860
YP_005087311.1 NC_016655_p59 hypothetical protein singleton unknown function unknown function 1 22786 22974
YP_005087282.1 NC_016655_p30 endonuclease phrog_1956 unknown function unknown function 1 12128 12460
YP_005087271.1 NC_016655_p19 hypothetical protein singleton unknown function unknown function -1 6101 6343
YP_005087316.1 NC_016655_p64 hypothetical protein singleton unknown function unknown function 1 27431 29128
YP_005087268.1 NC_016655_p16 hypothetical protein singleton unknown function unknown function -1 4411 4659
YP_005087274.1 NC_016655_p22 resolvase phrog_95 integrase integration and excision 1 7618 9012
YP_005087264.1 NC_016655_p12 hypothetical protein singleton unknown function unknown function -1 3656 3832
YP_005087297.1 NC_016655_p45 hypothetical protein phrog_762 unknown function unknown function 1 18020 18358
YP_005087308.1 NC_016655_p56 hypothetical protein singleton unknown function unknown function 1 21557 22003
YP_005087298.1 NC_016655_p46 hypothetical protein singleton unknown function unknown function 1 18355 18564
YP_005087303.1 NC_016655_p51 hypothetical protein singleton unknown function unknown function 1 19643 19903
YP_005087299.1 NC_016655_p47 hypothetical protein singleton unknown function unknown function 1 18557 18730
YP_005087296.1 NC_016655_p44 hypothetical protein singleton unknown function unknown function 1 17833 18018
YP_005087293.1 NC_016655_p41 hypothetical protein singleton unknown function unknown function -1 16590 17306
YP_005087301.1 NC_016655_p49 hypothetical protein singleton unknown function unknown function 1 18941 19186
YP_005087322.1 NC_016655_p70 hypothetical protein phrog_442 head-tail adaptor connector 1 35107 35721
YP_005087315.1 NC_016655_p63 lysin phrog_6700 endolysin lysis 1 26131 27207
YP_005087277.1 NC_016655_p25 hypothetical protein singleton unknown function unknown function 1 10112 10405
YP_005087319.1 NC_016655_p67 hypothetical protein singleton unknown function unknown function 1 31067 31213
YP_005087256.1 NC_016655_p4 hypothetical protein phrog_36262 unknown function unknown function -1 928 1251
YP_005087255.1 NC_016655_p3 hypothetical protein phrog_10480 unknown function unknown function -1 551 925
YP_005087335.1 NC_016655_p83 lysin phrog_2998 endolysin lysis 1 49534 50622
YP_005087332.1 NC_016655_p80 hypothetical protein phrog_1887 tail protein tail 1 46988 48121
YP_005087304.1 NC_016655_p52 hypothetical protein singleton unknown function unknown function -1 19915 20415
YP_005087310.1 NC_016655_p58 hypothetical protein singleton unknown function unknown function 1 22442 22789