| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_016655 |
Definition |
Rhodococcus phage REQ1, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae. |
DB of origin |
REFSEQ |
Length |
51342 |
Host Name |
Rhodococcus equi |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
85 |
%GC |
66.32 |
Number of singletons |
54 |
Number of paralogs |
2 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_005087327.1 | NC_016655_p75 | hypothetical protein | phrog_11991 | unknown function | unknown function | 1 | 37187 | 37687 |
| YP_005087273.1 | NC_016655_p21 | hypothetical protein | phrog_38040 | unknown function | unknown function | -1 | 6695 | 6889 |
| YP_005087272.1 | NC_016655_p20 | hypothetical protein | singleton | unknown function | unknown function | -1 | 6356 | 6682 |
| YP_005087275.1 | NC_016655_p23 | hypothetical protein | singleton | unknown function | unknown function | -1 | 9063 | 9185 |
| YP_005087285.1 | NC_016655_p33 | hypothetical protein | singleton | unknown function | unknown function | 1 | 13475 | 13741 |
| YP_005087324.1 | NC_016655_p72 | hypothetical protein | phrog_16194 | tail protein | tail | 1 | 36167 | 36499 |
| YP_005087258.1 | NC_016655_p6 | hypothetical protein | singleton | unknown function | unknown function | -1 | 1505 | 1936 |
| YP_005087281.1 | NC_016655_p29 | hypothetical protein | phrog_1333 | unknown function | unknown function | 1 | 11628 | 12131 |
| YP_005087330.1 | NC_016655_p78 | tape measure protein | phrog_58 | tail length tape measure protein | tail | 1 | 38584 | 42927 |
| YP_005087329.1 | NC_016655_p77 | hypothetical protein | phrog_32980 | unknown function | unknown function | 1 | 38218 | 38499 |
| YP_005087289.1 | NC_016655_p37 | hypothetical protein | singleton | unknown function | unknown function | 1 | 15320 | 15448 |
| YP_005087263.1 | NC_016655_p11 | hypothetical protein | singleton | unknown function | unknown function | -1 | 3422 | 3643 |
| YP_005087291.1 | NC_016655_p39 | hypothetical protein | singleton | unknown function | unknown function | 1 | 16226 | 16381 |
| YP_005087320.1 | NC_016655_p68 | portal protein | phrog_12 | portal protein | head and packaging | 1 | 31213 | 32679 |
| YP_005087286.1 | NC_016655_p34 | hypothetical protein | phrog_236 | nucleotide kinase | other | 1 | 13849 | 14694 |
| YP_005087312.1 | NC_016655_p60 | hypothetical protein | singleton | unknown function | unknown function | 1 | 23031 | 23159 |
| YP_005087305.1 | NC_016655_p53 | hypothetical protein | singleton | unknown function | unknown function | 1 | 20635 | 21171 |
| YP_005087314.1 | NC_016655_p62 | hypothetical protein | phrog_23653 | unknown function | unknown function | 1 | 25446 | 26012 |
| YP_005087262.1 | NC_016655_p10 | hypothetical protein | singleton | unknown function | unknown function | -1 | 2999 | 3400 |
| YP_005087333.1 | NC_016655_p81 | hypothetical protein | singleton | unknown function | unknown function | 1 | 48201 | 49109 |
| YP_005087276.1 | NC_016655_p24 | hypothetical protein | singleton | unknown function | unknown function | 1 | 9172 | 9510 |
| YP_005087269.1 | NC_016655_p17 | hypothetical protein | singleton | unknown function | unknown function | -1 | 4656 | 4937 |
| YP_005087259.1 | NC_016655_p7 | hypothetical protein | phrog_3908 | unknown function | unknown function | -1 | 1996 | 2205 |
| YP_005087290.1 | NC_016655_p38 | hypothetical protein | phrog_1674 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 15432 | 16226 |
| YP_005087331.1 | NC_016655_p79 | hypothetical protein | singleton | unknown function | unknown function | 1 | 42994 | 46974 |
| YP_005087279.1 | NC_016655_p27 | hypothetical protein | singleton | unknown function | unknown function | 1 | 10904 | 11272 |
| YP_005087328.1 | NC_016655_p76 | hypothetical protein | phrog_344 | tail assembly chaperone | tail | 1 | 37805 | 38203 |
| YP_005087261.1 | NC_016655_p9 | hypothetical protein | singleton | unknown function | unknown function | -1 | 2656 | 2994 |
| YP_005087307.1 | NC_016655_p55 | hypothetical protein | singleton | unknown function | unknown function | 1 | 21420 | 21554 |
| YP_005087292.1 | NC_016655_p40 | hypothetical protein | singleton | unknown function | unknown function | -1 | 16431 | 16550 |
| YP_005087267.1 | NC_016655_p15 | hypothetical protein | singleton | unknown function | unknown function | -1 | 4232 | 4405 |
| YP_005087326.1 | NC_016655_p74 | hypothetical protein | phrog_4574 | major tail protein | tail | 1 | 36756 | 37172 |
| YP_005087300.1 | NC_016655_p48 | hypothetical protein | singleton | unknown function | unknown function | 1 | 18723 | 18944 |
| YP_005087323.1 | NC_016655_p71 | hypothetical protein | phrog_17840 | tail terminator | connector | 1 | 35723 | 36151 |
| YP_005087294.1 | NC_016655_p42 | hypothetical protein | singleton | unknown function | unknown function | 1 | 17322 | 17645 |
| YP_005087270.1 | NC_016655_p18 | hypothetical protein | phrog_1221 | unknown function | unknown function | -1 | 5032 | 6081 |
| YP_005087306.1 | NC_016655_p54 | hypothetical protein | phrog_5984 | unknown function | unknown function | 1 | 21146 | 21418 |
| YP_005087337.1 | NC_016655_p85 | hypothetical protein | singleton | unknown function | unknown function | 1 | 50910 | 51272 |
| YP_005087278.1 | NC_016655_p26 | hypothetical protein | singleton | unknown function | unknown function | -1 | 10526 | 10873 |
| YP_005087318.1 | NC_016655_p66 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 29500 | 31053 |
| YP_005087334.1 | NC_016655_p82 | recombination endonuclease | phrog_2914 | endonuclease VII | DNA, RNA and nucleotide metabolism | 1 | 49241 | 49534 |
| YP_005087260.1 | NC_016655_p8 | hypothetical protein | singleton | unknown function | unknown function | -1 | 2198 | 2656 |
| YP_005087257.1 | NC_016655_p5 | hypothetical protein | singleton | unknown function | unknown function | -1 | 1258 | 1500 |
| YP_005087253.1 | NC_016655_p1 | hypothetical protein | phrog_36262 | unknown function | unknown function | -1 | 10 | 372 |
| YP_005087336.1 | NC_016655_p84 | hypothetical protein | singleton | unknown function | unknown function | 1 | 50638 | 50913 |
| YP_005087284.1 | NC_016655_p32 | hypothetical protein | singleton | unknown function | unknown function | 1 | 12699 | 13478 |
| YP_005087325.1 | NC_016655_p73 | hypothetical protein | singleton | unknown function | unknown function | 1 | 36499 | 36750 |
| YP_005087317.1 | NC_016655_p65 | hypothetical protein | singleton | unknown function | unknown function | 1 | 29132 | 29488 |
| YP_005087288.1 | NC_016655_p36 | hypothetical protein | singleton | unknown function | unknown function | 1 | 14905 | 15228 |
| YP_005087280.1 | NC_016655_p28 | hypothetical protein | phrog_762 | unknown function | unknown function | 1 | 11269 | 11631 |
| YP_005087302.1 | NC_016655_p50 | hypothetical protein | phrog_10893 | unknown function | unknown function | 1 | 19171 | 19650 |
| YP_005087313.1 | NC_016655_p61 | primase/polymerase | singleton | unknown function | unknown function | 1 | 23174 | 25267 |
| YP_005087266.1 | NC_016655_p14 | hypothetical protein | singleton | unknown function | unknown function | -1 | 4041 | 4235 |
| YP_005087321.1 | NC_016655_p69 | capsid protein | phrog_10 | major head protein | head and packaging | 1 | 32710 | 35031 |
| YP_005087254.1 | NC_016655_p2 | hypothetical protein | singleton | unknown function | unknown function | -1 | 386 | 535 |
| YP_005087265.1 | NC_016655_p13 | hypothetical protein | singleton | unknown function | unknown function | -1 | 3835 | 4035 |
| YP_005087283.1 | NC_016655_p31 | hypothetical protein | singleton | unknown function | unknown function | 1 | 12457 | 12597 |
| YP_005087287.1 | NC_016655_p35 | hypothetical protein | singleton | unknown function | unknown function | 1 | 14687 | 14908 |
| YP_005087309.1 | NC_016655_p57 | hypothetical protein | singleton | unknown function | unknown function | 1 | 21996 | 22457 |
| YP_005087295.1 | NC_016655_p43 | hypothetical protein | singleton | unknown function | unknown function | 1 | 17648 | 17860 |
| YP_005087311.1 | NC_016655_p59 | hypothetical protein | singleton | unknown function | unknown function | 1 | 22786 | 22974 |
| YP_005087282.1 | NC_016655_p30 | endonuclease | phrog_1956 | unknown function | unknown function | 1 | 12128 | 12460 |
| YP_005087271.1 | NC_016655_p19 | hypothetical protein | singleton | unknown function | unknown function | -1 | 6101 | 6343 |
| YP_005087316.1 | NC_016655_p64 | hypothetical protein | singleton | unknown function | unknown function | 1 | 27431 | 29128 |
| YP_005087268.1 | NC_016655_p16 | hypothetical protein | singleton | unknown function | unknown function | -1 | 4411 | 4659 |
| YP_005087274.1 | NC_016655_p22 | resolvase | phrog_95 | integrase | integration and excision | 1 | 7618 | 9012 |
| YP_005087264.1 | NC_016655_p12 | hypothetical protein | singleton | unknown function | unknown function | -1 | 3656 | 3832 |
| YP_005087297.1 | NC_016655_p45 | hypothetical protein | phrog_762 | unknown function | unknown function | 1 | 18020 | 18358 |
| YP_005087308.1 | NC_016655_p56 | hypothetical protein | singleton | unknown function | unknown function | 1 | 21557 | 22003 |
| YP_005087298.1 | NC_016655_p46 | hypothetical protein | singleton | unknown function | unknown function | 1 | 18355 | 18564 |
| YP_005087303.1 | NC_016655_p51 | hypothetical protein | singleton | unknown function | unknown function | 1 | 19643 | 19903 |
| YP_005087299.1 | NC_016655_p47 | hypothetical protein | singleton | unknown function | unknown function | 1 | 18557 | 18730 |
| YP_005087296.1 | NC_016655_p44 | hypothetical protein | singleton | unknown function | unknown function | 1 | 17833 | 18018 |
| YP_005087293.1 | NC_016655_p41 | hypothetical protein | singleton | unknown function | unknown function | -1 | 16590 | 17306 |
| YP_005087301.1 | NC_016655_p49 | hypothetical protein | singleton | unknown function | unknown function | 1 | 18941 | 19186 |
| YP_005087322.1 | NC_016655_p70 | hypothetical protein | phrog_442 | head-tail adaptor | connector | 1 | 35107 | 35721 |
| YP_005087315.1 | NC_016655_p63 | lysin | phrog_6700 | endolysin | lysis | 1 | 26131 | 27207 |
| YP_005087277.1 | NC_016655_p25 | hypothetical protein | singleton | unknown function | unknown function | 1 | 10112 | 10405 |
| YP_005087319.1 | NC_016655_p67 | hypothetical protein | singleton | unknown function | unknown function | 1 | 31067 | 31213 |
| YP_005087256.1 | NC_016655_p4 | hypothetical protein | phrog_36262 | unknown function | unknown function | -1 | 928 | 1251 |
| YP_005087255.1 | NC_016655_p3 | hypothetical protein | phrog_10480 | unknown function | unknown function | -1 | 551 | 925 |
| YP_005087335.1 | NC_016655_p83 | lysin | phrog_2998 | endolysin | lysis | 1 | 49534 | 50622 |
| YP_005087332.1 | NC_016655_p80 | hypothetical protein | phrog_1887 | tail protein | tail | 1 | 46988 | 48121 |
| YP_005087304.1 | NC_016655_p52 | hypothetical protein | singleton | unknown function | unknown function | -1 | 19915 | 20415 |
| YP_005087310.1 | NC_016655_p58 | hypothetical protein | singleton | unknown function | unknown function | 1 | 22442 | 22789 |