Genomic map of Cyanophage P-SSP2 (NC_016656)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_016656
Definition
Cyanophage P-SSP2, complete genome.
Molecule type
DNA
Genome structure
circular
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Autographiviridae; Tritonvirus; Synechococcus virus PSSP2.
DB of origin
REFSEQ
Length
45890
Host Name
Synechococcus sp.
Host domain
Bacteria
Is prophage?
undef
Number of proteins
56
%GC
37.93
Number of singletons
8
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_005087383.1 NC_016656_p46 hypothetical protein phrog_35130 unknown function unknown function 1 28691 29083
YP_005087381.1 NC_016656_p44 hypothetical protein phrog_28543 unknown function unknown function 1 26830 27027
YP_005087343.1 NC_016656_p6 hypothetical protein phrog_891 terminase small subunit head and packaging 1 1663 1908
YP_005087356.1 NC_016656_p19 hypothetical protein phrog_36314 unknown function unknown function 1 9361 9513
YP_005087340.1 NC_016656_p3 hypothetical protein phrog_650 unknown function unknown function 1 577 939
YP_005087391.1 NC_016656_p54 hypothetical protein phrog_13518 unknown function unknown function 1 40057 43944
YP_005087385.1 NC_016656_p48 tail tube protein B phrog_457 tail protein tail 1 29706 32639
YP_005087347.1 NC_016656_p10 DNA maturase beta subunit phrog_38 terminase large subunit head and packaging 1 3699 5432
YP_005087388.1 NC_016656_p51 hypothetical protein phrog_19322 unknown function unknown function 1 33309 33803
YP_005087382.1 NC_016656_p45 major capsid protein phrog_267 major head protein head and packaging 1 27332 28645
YP_005087348.1 NC_016656_p11 hypothetical protein phrog_16742 unknown function unknown function 1 5587 5847
YP_005087389.1 NC_016656_p52 hypothetical protein phrog_36240 unknown function unknown function 1 33810 35933
YP_005087380.1 NC_016656_p43 core photosystem II reaction center protein phrog_182 photosystem II D1 moron, auxiliary metabolic gene and host takeover 1 25751 26833
YP_005087342.1 NC_016656_p5 hypothetical protein phrog_2738 unknown function unknown function 1 1426 1584
YP_005087352.1 NC_016656_p15 hypothetical protein phrog_2554 unknown function unknown function 1 7698 8387
YP_005087363.1 NC_016656_p26 gp0.7 phrog_9665 transcriptional regulator transcription regulation 1 10908 11276
YP_005087354.1 NC_016656_p17 hypothetical protein singleton unknown function unknown function 1 8874 9158
YP_005087370.1 NC_016656_p33 hypothetical protein phrog_27006 unknown function unknown function 1 19841 20092
YP_005087349.1 NC_016656_p12 transaldolase family protein phrog_440 transaldolase other 1 5917 6561
YP_005087375.1 NC_016656_p38 hypothetical protein phrog_13568 unknown function unknown function 1 22444 22719
YP_005087360.1 NC_016656_p23 hypothetical protein phrog_9569 unknown function unknown function 1 10245 10559
YP_005087338.1 NC_016656_p1 hypothetical protein singleton unknown function unknown function -1 14 214
YP_005087392.1 NC_016656_p55 hypothetical protein phrog_9942 tail fiber protein tail 1 43945 45675
YP_005087377.1 NC_016656_p40 capsid assembly protein phrog_1052 head assembly head and packaging 1 24287 25081
YP_005087345.1 NC_016656_p8 hypothetical protein phrog_2214 HNH endonuclease DNA, RNA and nucleotide metabolism 1 2122 2454
YP_005087355.1 NC_016656_p18 hypothetical protein singleton unknown function unknown function 1 9155 9364
YP_005087358.1 NC_016656_p21 hypothetical protein phrog_23048 unknown function unknown function 1 9746 9928
YP_005087357.1 NC_016656_p20 hypothetical protein phrog_25438 unknown function unknown function 1 9510 9749
YP_005087376.1 NC_016656_p39 head-tail connector protein phrog_449 head-tail adaptor connector 1 22719 24284
YP_005087364.1 NC_016656_p27 hypothetical protein singleton unknown function unknown function 1 12443 12619
YP_005087371.1 NC_016656_p34 hypothetical protein phrog_236 nucleotide kinase other 1 19984 20202
YP_005087393.1 NC_016656_p56 hypothetical protein phrog_20003 unknown function unknown function 1 45685 45864
YP_005087367.1 NC_016656_p30 endonuclease phrog_945 endonuclease DNA, RNA and nucleotide metabolism 1 15362 15712
YP_005087359.1 NC_016656_p22 hypothetical protein phrog_30072 unknown function unknown function 1 10096 10248
YP_005087373.1 NC_016656_p36 hypothetical protein phrog_6799 ribonucleotide reductase class Ia beta subunit DNA, RNA and nucleotide metabolism 1 21571 22284
YP_005087369.1 NC_016656_p32 exonuclease phrog_107 exonuclease DNA, RNA and nucleotide metabolism 1 19108 19872
YP_005087361.1 NC_016656_p24 hypothetical protein phrog_21680 unknown function unknown function 1 10556 10720
YP_005087378.1 NC_016656_p41 hgh-light inducible protein phrog_178 high light inducible protein other 1 25137 25328
YP_005087368.1 NC_016656_p31 hypothetical protein singleton unknown function unknown function 1 17227 17370
YP_005087384.1 NC_016656_p47 tail tube protein A phrog_446 tail protein tail 1 29088 29588
YP_005087365.1 NC_016656_p28 RNA polymerase phrog_414 RNA polymerase DNA, RNA and nucleotide metabolism 1 12592 14793
YP_005087372.1 NC_016656_p35 ribonucleotide reductase domain-containing protein phrog_367 ribonucleotide reductase DNA, RNA and nucleotide metabolism 1 20168 21574
YP_005087339.1 NC_016656_p2 hypothetical protein phrog_721 unknown function unknown function 1 266 580
YP_005087346.1 NC_016656_p9 hypothetical protein phrog_33051 unknown function unknown function 1 2500 3681
YP_005087386.1 NC_016656_p49 hypothetical protein phrog_17835 unknown function unknown function 1 32632 32805
YP_005087362.1 NC_016656_p25 hypothetical protein singleton unknown function unknown function 1 10808 10948
YP_005087341.1 NC_016656_p4 hypothetical protein phrog_1755 unknown function unknown function 1 984 1472
YP_005087353.1 NC_016656_p16 hypothetical protein phrog_33278 unknown function unknown function 1 8479 8805
YP_005087350.1 NC_016656_p13 hypothetical protein singleton unknown function unknown function 1 7095 7352
YP_005087374.1 NC_016656_p37 hypothetical protein phrog_4970 unknown function unknown function 1 22253 22444
YP_005087366.1 NC_016656_p29 ssDNA binding protein phrog_112 Gp2.5-like ssDNA binding protein and ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 14793 15362
YP_005087387.1 NC_016656_p50 hypothetical protein phrog_308 internal virion protein head and packaging 1 32798 33253
YP_005087351.1 NC_016656_p14 hypothetical protein singleton unknown function unknown function 1 7273 7695
YP_005087344.1 NC_016656_p7 hypothetical protein phrog_6437 unknown function unknown function 1 1889 2125
YP_005087390.1 NC_016656_p53 hypothetical protein phrog_6651 internal virion protein head and packaging 1 35952 40016
YP_005087379.1 NC_016656_p42 hypothetical protein phrog_417 unknown function unknown function 1 25391 25750