Genomic map of Salmonella phage SPN1S (NC_016761)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_016761
Definition
Salmonella phage SPN1S, complete genome.
Molecule type
DNA
Genome structure
circular
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae; Uetakevirus.
DB of origin
REFSEQ
Length
38684
Host Name
Salmonella
Host domain
Bacteria
Is prophage?
undef
Number of proteins
52
%GC
50.16
Number of singletons
5
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_005097977.1 NC_016761_p2 terminase large subunit phrog_2 terminase large subunit head and packaging 1 666 2147
YP_005097994.1 NC_016761_p19 hypothetical protein phrog_684 virion structural protein head and packaging 1 17029 19503
YP_005097990.1 NC_016761_p15 hypothetical protein phrog_308 internal virion protein head and packaging 1 11393 11857
YP_005098011.1 NC_016761_p36 hypothetical protein phrog_17484 membrane protein moron, auxiliary metabolic gene and host takeover -1 30570 30686
YP_005098005.1 NC_016761_p30 integrase phrog_1 integrase integration and excision 1 27043 28296
YP_005098002.1 NC_016761_p27 holin phrog_217 holin lysis 1 25319 25627
YP_005098007.1 NC_016761_p32 adenine methylase phrog_359 DNA methyltransferase other -1 28469 29062
YP_005098022.1 NC_016761_p47 hypothetical protein phrog_190 Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 36076 36420
YP_005098000.1 NC_016761_p25 GtrA singleton unknown function unknown function -1 24495 24782
YP_005097985.1 NC_016761_p10 hypothetical protein phrog_427 unknown function unknown function 1 7242 7634
YP_005098012.1 NC_016761_p37 transcriptional regulator phrog_66 excisionase and transcriptional regulator integration and excision -1 30683 30931
YP_005098024.1 NC_016761_p49 hypothetical protein phrog_874 unknown function unknown function 1 36991 37596
YP_005098009.1 NC_016761_p34 hypothetical protein phrog_1998 unknown function unknown function -1 30123 30281
YP_005097996.1 NC_016761_p21 hypothetical protein phrog_450 unknown function unknown function -1 19704 20087
YP_005097991.1 NC_016761_p16 hypothetical protein phrog_418 internal virion protein head and packaging 1 11857 12399
YP_005098008.1 NC_016761_p33 bacteriophage protein phrog_7901 unknown function unknown function -1 29059 30054
YP_005097988.1 NC_016761_p13 hypothetical protein phrog_394 tail protein tail 1 8311 8916
YP_005097982.1 NC_016761_p7 hypothetical protein phrog_528 unknown function unknown function 1 5196 5492
YP_005098001.1 NC_016761_p26 hypothetical protein phrog_198 holin lysis 1 24928 25332
YP_005097979.1 NC_016761_p4 hypothetical protein singleton unknown function unknown function 1 2546 2716
YP_005097980.1 NC_016761_p5 hypothetical protein phrog_831 unknown function unknown function 1 3308 3514
YP_005097997.1 NC_016761_p22 tailspike phrog_1819 tail spike protein tail 1 20161 22470
YP_005098006.1 NC_016761_p31 hypothetical protein phrog_4701 unknown function unknown function -1 28293 28472
YP_005097998.1 NC_016761_p23 lipopolysaccharide modification acyltransferase 2 singleton unknown function unknown function -1 22506 22835
YP_005098026.1 NC_016761_p51 eaf phrog_6018 unknown function unknown function 1 37847 38206
YP_005097989.1 NC_016761_p14 hypothetical protein phrog_376 tail protein tail 1 8916 11393
YP_005097993.1 NC_016761_p18 hypothetical protein phrog_1145 unknown function unknown function 1 15222 17024
YP_005097992.1 NC_016761_p17 minor structural protein phrog_992 head protein head and packaging 1 12412 15225
YP_005098014.1 NC_016761_p39 hypothetical protein phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism -1 31872 32282
YP_005098010.1 NC_016761_p35 transcriptional activator phrog_868 transcriptional activator transcription regulation -1 30274 30573
YP_005097983.1 NC_016761_p8 endoprotease phrog_458 protease other 1 5495 6211
YP_005097984.1 NC_016761_p9 major capsid protein phrog_212 major head protein head and packaging 1 6222 7229
YP_005098016.1 NC_016761_p41 hypothetical protein phrog_856 unknown function unknown function -1 33084 33386
YP_005097986.1 NC_016761_p11 hypothetical protein phrog_590 unknown function unknown function 1 7627 7911
YP_005098017.1 NC_016761_p42 hypothetical protein phrog_898 unknown function unknown function -1 33391 33540
YP_005098018.1 NC_016761_p43 repressor phrog_8 transcriptional regulator transcription regulation -1 33765 34361
YP_005097981.1 NC_016761_p6 phage head-tail connector protein phrog_332 head-tail adaptor connector 1 3529 5199
YP_005098004.1 NC_016761_p29 Rz-like protein phrog_312 Rz-like spanin lysis 1 26243 26725
YP_005098021.1 NC_016761_p46 DNA replication protein phrog_2509 replication initiation protein DNA, RNA and nucleotide metabolism 1 35140 35955
YP_005097999.1 NC_016761_p24 lipopolysaccharide modification acyltransferase 1 singleton unknown function unknown function -1 22859 23710
YP_005097976.1 NC_016761_p1 terminase small subunit phrog_51 terminase small subunit head and packaging 1 1 669
YP_005098023.1 NC_016761_p48 hypothetical protein phrog_492 unknown function unknown function 1 36482 36961
YP_005098013.1 NC_016761_p38 RecT family protein phrog_561 RecT-like ssDNA annealing protein DNA, RNA and nucleotide metabolism -1 30981 31862
YP_005098020.1 NC_016761_p45 hypothetical protein phrog_1081 unknown function unknown function 1 34894 35097
YP_005097995.1 NC_016761_p20 hypothetical protein phrog_7892 unknown function unknown function 1 19514 19654
YP_005098025.1 NC_016761_p50 hypothetical protein phrog_667 unknown function unknown function 1 37593 37850
YP_005098027.1 NC_016761_p52 hypothetical protein phrog_536 transcriptional regulator transcription regulation 1 38348 38656
YP_005098015.1 NC_016761_p40 exonuclease VIII/RecE-like protein phrog_412 exonuclease VIII DNA, RNA and nucleotide metabolism -1 32263 33087
YP_005098003.1 NC_016761_p28 endolysin phrog_181 endolysin lysis 1 25617 26246
YP_005097978.1 NC_016761_p3 hypothetical protein singleton unknown function unknown function -1 2190 2384
YP_005097987.1 NC_016761_p12 hypothetical protein phrog_825 unknown function unknown function 1 7976 8311
YP_005098019.1 NC_016761_p44 hypothetical protein phrog_35 transcriptional repressor transcription regulation 1 34517 34750