| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_016761 |
Definition |
Salmonella phage SPN1S, complete genome. |
Molecule type |
DNA |
Genome structure |
circular |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae; Uetakevirus. |
DB of origin |
REFSEQ |
Length |
38684 |
Host Name |
Salmonella |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
52 |
%GC |
50.16 |
Number of singletons |
5 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_005097977.1 | NC_016761_p2 | terminase large subunit | phrog_2 | terminase large subunit | head and packaging | 1 | 666 | 2147 |
| YP_005097994.1 | NC_016761_p19 | hypothetical protein | phrog_684 | virion structural protein | head and packaging | 1 | 17029 | 19503 |
| YP_005097990.1 | NC_016761_p15 | hypothetical protein | phrog_308 | internal virion protein | head and packaging | 1 | 11393 | 11857 |
| YP_005098011.1 | NC_016761_p36 | hypothetical protein | phrog_17484 | membrane protein | moron, auxiliary metabolic gene and host takeover | -1 | 30570 | 30686 |
| YP_005098005.1 | NC_016761_p30 | integrase | phrog_1 | integrase | integration and excision | 1 | 27043 | 28296 |
| YP_005098002.1 | NC_016761_p27 | holin | phrog_217 | holin | lysis | 1 | 25319 | 25627 |
| YP_005098007.1 | NC_016761_p32 | adenine methylase | phrog_359 | DNA methyltransferase | other | -1 | 28469 | 29062 |
| YP_005098022.1 | NC_016761_p47 | hypothetical protein | phrog_190 | Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 36076 | 36420 |
| YP_005098000.1 | NC_016761_p25 | GtrA | singleton | unknown function | unknown function | -1 | 24495 | 24782 |
| YP_005097985.1 | NC_016761_p10 | hypothetical protein | phrog_427 | unknown function | unknown function | 1 | 7242 | 7634 |
| YP_005098012.1 | NC_016761_p37 | transcriptional regulator | phrog_66 | excisionase and transcriptional regulator | integration and excision | -1 | 30683 | 30931 |
| YP_005098024.1 | NC_016761_p49 | hypothetical protein | phrog_874 | unknown function | unknown function | 1 | 36991 | 37596 |
| YP_005098009.1 | NC_016761_p34 | hypothetical protein | phrog_1998 | unknown function | unknown function | -1 | 30123 | 30281 |
| YP_005097996.1 | NC_016761_p21 | hypothetical protein | phrog_450 | unknown function | unknown function | -1 | 19704 | 20087 |
| YP_005097991.1 | NC_016761_p16 | hypothetical protein | phrog_418 | internal virion protein | head and packaging | 1 | 11857 | 12399 |
| YP_005098008.1 | NC_016761_p33 | bacteriophage protein | phrog_7901 | unknown function | unknown function | -1 | 29059 | 30054 |
| YP_005097988.1 | NC_016761_p13 | hypothetical protein | phrog_394 | tail protein | tail | 1 | 8311 | 8916 |
| YP_005097982.1 | NC_016761_p7 | hypothetical protein | phrog_528 | unknown function | unknown function | 1 | 5196 | 5492 |
| YP_005098001.1 | NC_016761_p26 | hypothetical protein | phrog_198 | holin | lysis | 1 | 24928 | 25332 |
| YP_005097979.1 | NC_016761_p4 | hypothetical protein | singleton | unknown function | unknown function | 1 | 2546 | 2716 |
| YP_005097980.1 | NC_016761_p5 | hypothetical protein | phrog_831 | unknown function | unknown function | 1 | 3308 | 3514 |
| YP_005097997.1 | NC_016761_p22 | tailspike | phrog_1819 | tail spike protein | tail | 1 | 20161 | 22470 |
| YP_005098006.1 | NC_016761_p31 | hypothetical protein | phrog_4701 | unknown function | unknown function | -1 | 28293 | 28472 |
| YP_005097998.1 | NC_016761_p23 | lipopolysaccharide modification acyltransferase 2 | singleton | unknown function | unknown function | -1 | 22506 | 22835 |
| YP_005098026.1 | NC_016761_p51 | eaf | phrog_6018 | unknown function | unknown function | 1 | 37847 | 38206 |
| YP_005097989.1 | NC_016761_p14 | hypothetical protein | phrog_376 | tail protein | tail | 1 | 8916 | 11393 |
| YP_005097993.1 | NC_016761_p18 | hypothetical protein | phrog_1145 | unknown function | unknown function | 1 | 15222 | 17024 |
| YP_005097992.1 | NC_016761_p17 | minor structural protein | phrog_992 | head protein | head and packaging | 1 | 12412 | 15225 |
| YP_005098014.1 | NC_016761_p39 | hypothetical protein | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 31872 | 32282 |
| YP_005098010.1 | NC_016761_p35 | transcriptional activator | phrog_868 | transcriptional activator | transcription regulation | -1 | 30274 | 30573 |
| YP_005097983.1 | NC_016761_p8 | endoprotease | phrog_458 | protease | other | 1 | 5495 | 6211 |
| YP_005097984.1 | NC_016761_p9 | major capsid protein | phrog_212 | major head protein | head and packaging | 1 | 6222 | 7229 |
| YP_005098016.1 | NC_016761_p41 | hypothetical protein | phrog_856 | unknown function | unknown function | -1 | 33084 | 33386 |
| YP_005097986.1 | NC_016761_p11 | hypothetical protein | phrog_590 | unknown function | unknown function | 1 | 7627 | 7911 |
| YP_005098017.1 | NC_016761_p42 | hypothetical protein | phrog_898 | unknown function | unknown function | -1 | 33391 | 33540 |
| YP_005098018.1 | NC_016761_p43 | repressor | phrog_8 | transcriptional regulator | transcription regulation | -1 | 33765 | 34361 |
| YP_005097981.1 | NC_016761_p6 | phage head-tail connector protein | phrog_332 | head-tail adaptor | connector | 1 | 3529 | 5199 |
| YP_005098004.1 | NC_016761_p29 | Rz-like protein | phrog_312 | Rz-like spanin | lysis | 1 | 26243 | 26725 |
| YP_005098021.1 | NC_016761_p46 | DNA replication protein | phrog_2509 | replication initiation protein | DNA, RNA and nucleotide metabolism | 1 | 35140 | 35955 |
| YP_005097999.1 | NC_016761_p24 | lipopolysaccharide modification acyltransferase 1 | singleton | unknown function | unknown function | -1 | 22859 | 23710 |
| YP_005097976.1 | NC_016761_p1 | terminase small subunit | phrog_51 | terminase small subunit | head and packaging | 1 | 1 | 669 |
| YP_005098023.1 | NC_016761_p48 | hypothetical protein | phrog_492 | unknown function | unknown function | 1 | 36482 | 36961 |
| YP_005098013.1 | NC_016761_p38 | RecT family protein | phrog_561 | RecT-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | -1 | 30981 | 31862 |
| YP_005098020.1 | NC_016761_p45 | hypothetical protein | phrog_1081 | unknown function | unknown function | 1 | 34894 | 35097 |
| YP_005097995.1 | NC_016761_p20 | hypothetical protein | phrog_7892 | unknown function | unknown function | 1 | 19514 | 19654 |
| YP_005098025.1 | NC_016761_p50 | hypothetical protein | phrog_667 | unknown function | unknown function | 1 | 37593 | 37850 |
| YP_005098027.1 | NC_016761_p52 | hypothetical protein | phrog_536 | transcriptional regulator | transcription regulation | 1 | 38348 | 38656 |
| YP_005098015.1 | NC_016761_p40 | exonuclease VIII/RecE-like protein | phrog_412 | exonuclease VIII | DNA, RNA and nucleotide metabolism | -1 | 32263 | 33087 |
| YP_005098003.1 | NC_016761_p28 | endolysin | phrog_181 | endolysin | lysis | 1 | 25617 | 26246 |
| YP_005097978.1 | NC_016761_p3 | hypothetical protein | singleton | unknown function | unknown function | -1 | 2190 | 2384 |
| YP_005097987.1 | NC_016761_p12 | hypothetical protein | phrog_825 | unknown function | unknown function | 1 | 7976 | 8311 |
| YP_005098019.1 | NC_016761_p44 | hypothetical protein | phrog_35 | transcriptional repressor | transcription regulation | 1 | 34517 | 34750 |