| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_016762 |
Definition |
Pseudomonas phage phi297, complete genome. |
Molecule type |
DNA |
Genome structure |
circular |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae. |
DB of origin |
REFSEQ |
Length |
49135 |
Host Name |
Pseudomonas aeruginosa |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
69 |
%GC |
62.14 |
Number of singletons |
5 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_005098075.1 | NC_016762_p48 | hypothetical protein | phrog_2138 | unknown function | unknown function | 1 | 30720 | 30911 |
| YP_005098056.1 | NC_016762_p29 | hypothetical protein | phrog_35 | transcriptional repressor | transcription regulation | 1 | 17613 | 17825 |
| YP_005098048.1 | NC_016762_p21 | global regulatory protein | phrog_5527 | transcriptional regulator | transcription regulation | -1 | 13397 | 13768 |
| YP_005098054.1 | NC_016762_p27 | ParA protein | phrog_164 | ParA-like partition protein | DNA, RNA and nucleotide metabolism | -1 | 15492 | 16544 |
| YP_005098031.1 | NC_016762_p4 | hypothetical protein | phrog_6604 | unknown function | unknown function | -1 | 2055 | 2303 |
| YP_005098058.1 | NC_016762_p31 | hypothetical protein | singleton | unknown function | unknown function | 1 | 18256 | 18378 |
| YP_005098032.1 | NC_016762_p5 | hypothetical protein | phrog_4894 | unknown function | unknown function | -1 | 2386 | 2736 |
| YP_005098046.1 | NC_016762_p19 | hypothetical protein | phrog_6125 | unknown function | unknown function | -1 | 12666 | 12818 |
| YP_005098028.1 | NC_016762_p1 | hypothetical protein | phrog_7614 | unknown function | unknown function | -1 | 49062 | 49135 |
| YP_005098028.1 | NC_016762_p1 | hypothetical protein | phrog_7614 | unknown function | unknown function | -1 | 1 | 397 |
| YP_005098029.1 | NC_016762_p2 | hypothetical protein | phrog_3956 | unknown function | unknown function | -1 | 461 | 1888 |
| YP_005098089.1 | NC_016762_p62 | O-antigen beta polymerase | phrog_19842 | polymerase | DNA, RNA and nucleotide metabolism | -1 | 43858 | 45012 |
| YP_005098049.1 | NC_016762_p22 | hypothetical protein | phrog_9037 | unknown function | unknown function | -1 | 13801 | 14064 |
| YP_005098080.1 | NC_016762_p53 | hypothetical protein | phrog_782 | unknown function | unknown function | 1 | 32362 | 32736 |
| YP_005098072.1 | NC_016762_p45 | hypothetical protein | phrog_760 | unknown function | unknown function | 1 | 27868 | 29145 |
| YP_005098034.1 | NC_016762_p7 | hypothetical protein | phrog_355 | nucleoside 2-deoxyribosyltransferase | DNA, RNA and nucleotide metabolism | -1 | 3302 | 3625 |
| YP_005098062.1 | NC_016762_p35 | replicative DNA helicase | phrog_19 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | 1 | 20267 | 21682 |
| YP_005098044.1 | NC_016762_p17 | hypothetical protein | phrog_6457 | unknown function | unknown function | -1 | 12273 | 12464 |
| YP_005098095.1 | NC_016762_p68 | integrase | phrog_1 | integrase | integration and excision | 1 | 47758 | 48876 |
| YP_005098085.1 | NC_016762_p58 | hypothetical protein | phrog_396 | minor tail protein | tail | 1 | 37819 | 38310 |
| YP_005098038.1 | NC_016762_p11 | recombinase | phrog_77 | SbcC-like subunit of palindrome specific endonuclease | DNA, RNA and nucleotide metabolism | -1 | 7571 | 9316 |
| YP_005098041.1 | NC_016762_p14 | RecT protein | phrog_561 | RecT-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | -1 | 10511 | 11329 |
| YP_005098087.1 | NC_016762_p60 | hypothetical protein | phrog_469 | tail protein | tail | 1 | 38694 | 41423 |
| YP_005098042.1 | NC_016762_p15 | hypothetical protein | phrog_69 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 11341 | 12144 |
| YP_005098052.1 | NC_016762_p25 | hypothetical protein | phrog_2707 | unknown function | unknown function | 1 | 14800 | 15135 |
| YP_005098071.1 | NC_016762_p44 | head morphogenesis protein | phrog_758 | head morphogenesis | head and packaging | 1 | 26881 | 27864 |
| YP_005098083.1 | NC_016762_p56 | tail tape measure protein | phrog_1107 | tail length tape measure protein | tail | 1 | 34360 | 37371 |
| YP_005098090.1 | NC_016762_p63 | hypothetical protein | phrog_3377 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 45174 | 45782 |
| YP_005098081.1 | NC_016762_p54 | hypothetical protein | phrog_853 | major tail protein | tail | 1 | 32751 | 33746 |
| YP_005098065.1 | NC_016762_p38 | hypothetical protein | phrog_198 | holin | lysis | 1 | 22954 | 23343 |
| YP_005098043.1 | NC_016762_p16 | hypothetical protein | phrog_5864 | unknown function | unknown function | -1 | 12152 | 12289 |
| YP_005098063.1 | NC_016762_p36 | holliday junction resolvase | phrog_140 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 21675 | 22124 |
| YP_005098066.1 | NC_016762_p39 | hypothetical protein | phrog_217 | holin | lysis | 1 | 23336 | 23620 |
| YP_005098051.1 | NC_016762_p24 | hypothetical protein | singleton | unknown function | unknown function | -1 | 14387 | 14599 |
| YP_005098067.1 | NC_016762_p40 | terminase small subunit | phrog_51 | terminase small subunit | head and packaging | 1 | 23629 | 24171 |
| YP_005098036.1 | NC_016762_p9 | hypothetical protein | phrog_3190 | unknown function | unknown function | -1 | 4266 | 4832 |
| YP_005098078.1 | NC_016762_p51 | hypothetical protein | phrog_797 | unknown function | unknown function | 1 | 31621 | 31959 |
| YP_005098084.1 | NC_016762_p57 | hypothetical protein | phrog_384 | virion structural protein | head and packaging | 1 | 37368 | 37835 |
| YP_005098039.1 | NC_016762_p12 | DNA segregation ATPase | phrog_6576 | unknown function | unknown function | -1 | 9320 | 10291 |
| YP_005098030.1 | NC_016762_p3 | hypothetical protein | singleton | unknown function | unknown function | -1 | 1948 | 2091 |
| YP_005098060.1 | NC_016762_p33 | hypothetical protein | phrog_6111 | unknown function | unknown function | 1 | 18984 | 19265 |
| YP_005098057.1 | NC_016762_p30 | hypothetical protein | phrog_29325 | unknown function | unknown function | 1 | 17858 | 18241 |
| YP_005098059.1 | NC_016762_p32 | hypothetical protein | phrog_163 | CII-like transcriptional activator | transcription regulation | 1 | 18409 | 18981 |
| YP_005098076.1 | NC_016762_p49 | hypothetical protein | phrog_17702 | unknown function | unknown function | 1 | 30868 | 31236 |
| YP_005098091.1 | NC_016762_p64 | phage lysozyme | phrog_90 | endolysin | lysis | 1 | 45936 | 46418 |
| YP_005098037.1 | NC_016762_p10 | DNA methylase N-4/N-6 domain protein | phrog_16 | DNA helicase | DNA, RNA and nucleotide metabolism | -1 | 4798 | 7428 |
| YP_005098074.1 | NC_016762_p47 | coat protein | phrog_771 | virion structural protein | head and packaging | 1 | 29614 | 30708 |
| YP_005098035.1 | NC_016762_p8 | hypothetical protein | phrog_4826 | unknown function | unknown function | -1 | 3622 | 4116 |
| YP_005098068.1 | NC_016762_p41 | terminase large subunit | phrog_2 | terminase large subunit | head and packaging | 1 | 24155 | 25408 |
| YP_005098079.1 | NC_016762_p52 | hypothetical protein | phrog_5 | tail completion or Neck1 protein | connector | 1 | 31961 | 32365 |
| YP_005098082.1 | NC_016762_p55 | hypothetical protein | phrog_791 | unknown function | unknown function | 1 | 33743 | 34360 |
| YP_005098033.1 | NC_016762_p6 | hypothetical protein | phrog_2457 | unknown function | unknown function | -1 | 2733 | 3305 |
| YP_005098077.1 | NC_016762_p50 | hypothetical protein | phrog_786 | unknown function | unknown function | 1 | 31223 | 31624 |
| YP_005098093.1 | NC_016762_p66 | hypothetical protein | phrog_3580 | unknown function | unknown function | 1 | 46780 | 47109 |
| YP_005098092.1 | NC_016762_p65 | hypothetical protein | phrog_3774 | unknown function | unknown function | 1 | 46415 | 46783 |
| YP_005098086.1 | NC_016762_p59 | hypothetical protein | phrog_329 | minor tail protein | tail | 1 | 38315 | 38722 |
| YP_005098070.1 | NC_016762_p43 | hypothetical protein | phrog_146 | portal protein | head and packaging | 1 | 25608 | 26978 |
| YP_005098088.1 | NC_016762_p61 | hypothetical protein | phrog_13768 | tail protein | tail | 1 | 41484 | 43724 |
| YP_005098055.1 | NC_016762_p28 | phage repressor | phrog_4 | transcriptional repressor | transcription regulation | -1 | 16686 | 17558 |
| YP_005098073.1 | NC_016762_p46 | hypothetical protein | phrog_766 | head decoration | head and packaging | 1 | 29149 | 29598 |
| YP_005098050.1 | NC_016762_p23 | hypothetical protein | phrog_24301 | unknown function | unknown function | -1 | 14076 | 14204 |
| YP_005098096.1 | NC_016762_p69 | AlpA family transcriptional regulator | phrog_66 | excisionase and transcriptional regulator | integration and excision | -1 | 48877 | 49110 |
| YP_005098064.1 | NC_016762_p37 | hypothetical protein | phrog_3373 | unknown function | unknown function | 1 | 22153 | 22839 |
| YP_005098061.1 | NC_016762_p34 | DNA replication protein O | phrog_22470 | replication protein | DNA, RNA and nucleotide metabolism | 1 | 19252 | 20274 |
| YP_005098047.1 | NC_016762_p20 | hypothetical protein | singleton | unknown function | unknown function | -1 | 12900 | 13157 |
| YP_005098053.1 | NC_016762_p26 | hypothetical protein | singleton | unknown function | unknown function | 1 | 15137 | 15490 |
| YP_005098040.1 | NC_016762_p13 | hypothetical protein | phrog_7521 | unknown function | unknown function | -1 | 10304 | 10504 |
| YP_005098045.1 | NC_016762_p18 | hypothetical protein | phrog_6033 | unknown function | unknown function | -1 | 12461 | 12682 |
| YP_005098069.1 | NC_016762_p42 | hypothetical protein | phrog_10752 | unknown function | unknown function | 1 | 25408 | 25605 |
| YP_005098094.1 | NC_016762_p67 | hypothetical protein | phrog_3944 | unknown function | unknown function | 1 | 47145 | 47408 |