Genomic map of Salmonella phage SE2 (NC_016763)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_016763
Definition
Salmonella phage SE2, complete genome.
Molecule type
DNA
Genome structure
circular
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Guernseyvirinae; Jerseyvirus.
DB of origin
REFSEQ
Length
43221
Host Name
Salmonella enterica
Host domain
Bacteria
Is prophage?
undef
Number of proteins
61
%GC
49.64
Number of singletons
2
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_005098098.1 NC_016763_p2 hypothetical protein phrog_99 HNH endonuclease DNA, RNA and nucleotide metabolism -1 1521 2018
YP_005098107.1 NC_016763_p11 hypothetical protein phrog_3127 unknown function unknown function -1 8265 8777
YP_005098140.1 NC_016763_p44 hypothetical protein phrog_3614 unknown function unknown function 1 27085 27690
YP_005098119.1 NC_016763_p23 hypothetical protein phrog_2180 unknown function unknown function 1 15783 15968
YP_005098145.1 NC_016763_p49 DNA binding protein phrog_63 anti-repressor Ant transcription regulation -1 30058 30498
YP_005098142.1 NC_016763_p46 hypothetical protein phrog_169 tail completion or Neck1 protein connector 1 28046 28441
YP_005098148.1 NC_016763_p52 hypothetical protein phrog_704 DNA repair exonuclease DNA, RNA and nucleotide metabolism -1 32319 33473
YP_005098156.1 NC_016763_p60 hypothetical protein phrog_469 tail protein tail 1 38359 40917
YP_005098141.1 NC_016763_p45 hypothetical protein phrog_161 head closure Hc1 connector 1 27714 28049
YP_005098146.1 NC_016763_p50 hypothetical protein phrog_27969 unknown function unknown function 1 30503 31093
YP_005098137.1 NC_016763_p41 hypothetical protein phrog_4069 Hoc-like head decoration head and packaging 1 25994 26344
YP_005098109.1 NC_016763_p13 hypothetical protein phrog_3228 replicative helicase-primase DNA, RNA and nucleotide metabolism -1 9144 11330
YP_005098143.1 NC_016763_p47 hypothetical protein phrog_179 tail terminator connector 1 28441 28860
YP_005098120.1 NC_016763_p24 hypothetical protein phrog_4684 unknown function unknown function 1 15965 16120
YP_005098139.1 NC_016763_p43 hypothetical protein phrog_477 head-tail adaptor Ad1 connector 1 26573 27082
YP_005098113.1 NC_016763_p17 hypothetical protein phrog_6094 unknown function unknown function 1 13115 13465
YP_005098111.1 NC_016763_p15 hypothetical protein phrog_66 excisionase and transcriptional regulator integration and excision -1 11617 11787
YP_005098102.1 NC_016763_p6 DNA polymerase phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism -1 3328 5712
YP_005098114.1 NC_016763_p18 hypothetical protein phrog_3766 unknown function unknown function 1 13462 13665
YP_005098126.1 NC_016763_p30 hypothetical protein phrog_3064 terminase head and packaging 1 17368 17874
YP_005098110.1 NC_016763_p14 hypothetical protein phrog_5169 unknown function unknown function -1 11387 11542
YP_005098115.1 NC_016763_p19 hypothetical protein phrog_4947 unknown function unknown function 1 13668 14039
YP_005098125.1 NC_016763_p29 hypothetical protein phrog_18319 unknown function unknown function 1 17208 17339
YP_005098130.1 NC_016763_p34 hypothetical protein phrog_241 head morphogenesis head and packaging 1 21571 22521
YP_005098117.1 NC_016763_p21 hypothetical protein phrog_2508 holin lysis 1 14841 15131
YP_005098099.1 NC_016763_p3 hypothetical protein phrog_4879 unknown function unknown function -1 2015 2206
YP_005098149.1 NC_016763_p53 hypothetical protein phrog_1039 immunity to superinfection moron, auxiliary metabolic gene and host takeover -1 33536 33715
YP_005098134.1 NC_016763_p38 hypothetical protein phrog_206 head scaffolding protein head and packaging 1 23880 24581
YP_005098136.1 NC_016763_p40 head protein phrog_4366 head fiber protein head and packaging 1 25695 25982
YP_005098118.1 NC_016763_p22 hypothetical protein phrog_7 endolysin lysis 1 15109 15597
YP_005098104.1 NC_016763_p8 hypothetical protein phrog_69 exonuclease DNA, RNA and nucleotide metabolism -1 6478 7752
YP_005098138.1 NC_016763_p42 hypothetical protein phrog_4451 unknown function unknown function 1 26381 26569
YP_005098105.1 NC_016763_p9 hypothetical protein phrog_4965 unknown function unknown function -1 7749 8021
YP_005098132.1 NC_016763_p36 hypothetical protein phrog_2536 Rz-like spanin lysis 1 23300 23683
YP_005098152.1 NC_016763_p56 hypothetical protein phrog_1538 tail length tape measure protein tail 1 34659 36992
YP_005098100.1 NC_016763_p4 hypothetical protein phrog_5702 Holliday junction resolvase DNA, RNA and nucleotide metabolism -1 2238 2432
YP_005098106.1 NC_016763_p10 hypothetical protein phrog_8602 unknown function unknown function -1 8018 8221
YP_005098108.1 NC_016763_p12 hypothetical protein phrog_3 transcriptional repressor transcription regulation 1 8911 9129
YP_005098122.1 NC_016763_p26 hypothetical protein phrog_10200 unknown function unknown function 1 16296 16445
YP_005098103.1 NC_016763_p7 hypothetical protein phrog_112 Gp2.5-like ssDNA binding protein and ssDNA annealing protein DNA, RNA and nucleotide metabolism -1 5770 6396
YP_005098157.1 NC_016763_p61 tailspike protein phrog_1819 tail spike protein tail 1 40930 42984
YP_005098097.1 NC_016763_p1 hypothetical protein phrog_62 DNA helicase DNA, RNA and nucleotide metabolism -1 100 1524
YP_005098127.1 NC_016763_p31 terminase phrog_2 terminase large subunit head and packaging 1 17996 19135
YP_005098135.1 NC_016763_p39 hypothetical protein phrog_247 major head protein head and packaging 1 24585 25634
YP_005098147.1 NC_016763_p51 DNA methylase N-4/N-6 domain protein singleton unknown function unknown function -1 31132 31560
YP_005098129.1 NC_016763_p33 amidase phrog_6095 amidase lysis -1 20651 21301
YP_005098121.1 NC_016763_p25 hypothetical protein phrog_1402 unknown function unknown function 1 16117 16299
YP_005098150.1 NC_016763_p54 hypothetical protein phrog_313 Tail assembly chaperone tail 1 33885 34301
YP_005098128.1 NC_016763_p32 structural protein phrog_145 portal protein head and packaging 1 19148 20620
YP_005098116.1 NC_016763_p20 hypothetical protein phrog_1040 peptidase HslV family other 1 14045 14479
YP_005098133.1 NC_016763_p37 p11.5 protein phrog_5672 Rz-like spanin lysis 1 23652 23795
YP_005098124.1 NC_016763_p28 hypothetical protein phrog_10956 unknown function unknown function 1 16965 17147
YP_005098153.1 NC_016763_p57 hypothetical protein phrog_384 virion structural protein head and packaging 1 37051 37494
YP_005098154.1 NC_016763_p58 hypothetical protein phrog_396 minor tail protein tail 1 37491 38006
YP_005098144.1 NC_016763_p48 tail protein phrog_290 minor tail protein tail 1 28860 30029
YP_005098123.1 NC_016763_p27 hypothetical protein singleton unknown function unknown function -1 16708 16902
YP_005098155.1 NC_016763_p59 hypothetical protein phrog_329 minor tail protein tail 1 38003 38368
YP_005098101.1 NC_016763_p5 DNA polymerase phrog_7766 DNA polymerase DNA, RNA and nucleotide metabolism -1 2613 3215
YP_005098151.1 NC_016763_p55 hypothetical protein phrog_4557 unknown function unknown function 1 34307 34666
YP_005098112.1 NC_016763_p16 hypothetical protein phrog_9384 unknown function unknown function 1 12781 12945
YP_005098131.1 NC_016763_p35 tail protein phrog_3945 Hoc-like head decoration head and packaging 1 22524 22982