| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_016763 |
Definition |
Salmonella phage SE2, complete genome. |
Molecule type |
DNA |
Genome structure |
circular |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Guernseyvirinae; Jerseyvirus. |
DB of origin |
REFSEQ |
Length |
43221 |
Host Name |
Salmonella enterica |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
61 |
%GC |
49.64 |
Number of singletons |
2 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_005098098.1 | NC_016763_p2 | hypothetical protein | phrog_99 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 1521 | 2018 |
| YP_005098107.1 | NC_016763_p11 | hypothetical protein | phrog_3127 | unknown function | unknown function | -1 | 8265 | 8777 |
| YP_005098140.1 | NC_016763_p44 | hypothetical protein | phrog_3614 | unknown function | unknown function | 1 | 27085 | 27690 |
| YP_005098119.1 | NC_016763_p23 | hypothetical protein | phrog_2180 | unknown function | unknown function | 1 | 15783 | 15968 |
| YP_005098145.1 | NC_016763_p49 | DNA binding protein | phrog_63 | anti-repressor Ant | transcription regulation | -1 | 30058 | 30498 |
| YP_005098142.1 | NC_016763_p46 | hypothetical protein | phrog_169 | tail completion or Neck1 protein | connector | 1 | 28046 | 28441 |
| YP_005098148.1 | NC_016763_p52 | hypothetical protein | phrog_704 | DNA repair exonuclease | DNA, RNA and nucleotide metabolism | -1 | 32319 | 33473 |
| YP_005098156.1 | NC_016763_p60 | hypothetical protein | phrog_469 | tail protein | tail | 1 | 38359 | 40917 |
| YP_005098141.1 | NC_016763_p45 | hypothetical protein | phrog_161 | head closure Hc1 | connector | 1 | 27714 | 28049 |
| YP_005098146.1 | NC_016763_p50 | hypothetical protein | phrog_27969 | unknown function | unknown function | 1 | 30503 | 31093 |
| YP_005098137.1 | NC_016763_p41 | hypothetical protein | phrog_4069 | Hoc-like head decoration | head and packaging | 1 | 25994 | 26344 |
| YP_005098109.1 | NC_016763_p13 | hypothetical protein | phrog_3228 | replicative helicase-primase | DNA, RNA and nucleotide metabolism | -1 | 9144 | 11330 |
| YP_005098143.1 | NC_016763_p47 | hypothetical protein | phrog_179 | tail terminator | connector | 1 | 28441 | 28860 |
| YP_005098120.1 | NC_016763_p24 | hypothetical protein | phrog_4684 | unknown function | unknown function | 1 | 15965 | 16120 |
| YP_005098139.1 | NC_016763_p43 | hypothetical protein | phrog_477 | head-tail adaptor Ad1 | connector | 1 | 26573 | 27082 |
| YP_005098113.1 | NC_016763_p17 | hypothetical protein | phrog_6094 | unknown function | unknown function | 1 | 13115 | 13465 |
| YP_005098111.1 | NC_016763_p15 | hypothetical protein | phrog_66 | excisionase and transcriptional regulator | integration and excision | -1 | 11617 | 11787 |
| YP_005098102.1 | NC_016763_p6 | DNA polymerase | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 3328 | 5712 |
| YP_005098114.1 | NC_016763_p18 | hypothetical protein | phrog_3766 | unknown function | unknown function | 1 | 13462 | 13665 |
| YP_005098126.1 | NC_016763_p30 | hypothetical protein | phrog_3064 | terminase | head and packaging | 1 | 17368 | 17874 |
| YP_005098110.1 | NC_016763_p14 | hypothetical protein | phrog_5169 | unknown function | unknown function | -1 | 11387 | 11542 |
| YP_005098115.1 | NC_016763_p19 | hypothetical protein | phrog_4947 | unknown function | unknown function | 1 | 13668 | 14039 |
| YP_005098125.1 | NC_016763_p29 | hypothetical protein | phrog_18319 | unknown function | unknown function | 1 | 17208 | 17339 |
| YP_005098130.1 | NC_016763_p34 | hypothetical protein | phrog_241 | head morphogenesis | head and packaging | 1 | 21571 | 22521 |
| YP_005098117.1 | NC_016763_p21 | hypothetical protein | phrog_2508 | holin | lysis | 1 | 14841 | 15131 |
| YP_005098099.1 | NC_016763_p3 | hypothetical protein | phrog_4879 | unknown function | unknown function | -1 | 2015 | 2206 |
| YP_005098149.1 | NC_016763_p53 | hypothetical protein | phrog_1039 | immunity to superinfection | moron, auxiliary metabolic gene and host takeover | -1 | 33536 | 33715 |
| YP_005098134.1 | NC_016763_p38 | hypothetical protein | phrog_206 | head scaffolding protein | head and packaging | 1 | 23880 | 24581 |
| YP_005098136.1 | NC_016763_p40 | head protein | phrog_4366 | head fiber protein | head and packaging | 1 | 25695 | 25982 |
| YP_005098118.1 | NC_016763_p22 | hypothetical protein | phrog_7 | endolysin | lysis | 1 | 15109 | 15597 |
| YP_005098104.1 | NC_016763_p8 | hypothetical protein | phrog_69 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 6478 | 7752 |
| YP_005098138.1 | NC_016763_p42 | hypothetical protein | phrog_4451 | unknown function | unknown function | 1 | 26381 | 26569 |
| YP_005098105.1 | NC_016763_p9 | hypothetical protein | phrog_4965 | unknown function | unknown function | -1 | 7749 | 8021 |
| YP_005098132.1 | NC_016763_p36 | hypothetical protein | phrog_2536 | Rz-like spanin | lysis | 1 | 23300 | 23683 |
| YP_005098152.1 | NC_016763_p56 | hypothetical protein | phrog_1538 | tail length tape measure protein | tail | 1 | 34659 | 36992 |
| YP_005098100.1 | NC_016763_p4 | hypothetical protein | phrog_5702 | Holliday junction resolvase | DNA, RNA and nucleotide metabolism | -1 | 2238 | 2432 |
| YP_005098106.1 | NC_016763_p10 | hypothetical protein | phrog_8602 | unknown function | unknown function | -1 | 8018 | 8221 |
| YP_005098108.1 | NC_016763_p12 | hypothetical protein | phrog_3 | transcriptional repressor | transcription regulation | 1 | 8911 | 9129 |
| YP_005098122.1 | NC_016763_p26 | hypothetical protein | phrog_10200 | unknown function | unknown function | 1 | 16296 | 16445 |
| YP_005098103.1 | NC_016763_p7 | hypothetical protein | phrog_112 | Gp2.5-like ssDNA binding protein and ssDNA annealing protein | DNA, RNA and nucleotide metabolism | -1 | 5770 | 6396 |
| YP_005098157.1 | NC_016763_p61 | tailspike protein | phrog_1819 | tail spike protein | tail | 1 | 40930 | 42984 |
| YP_005098097.1 | NC_016763_p1 | hypothetical protein | phrog_62 | DNA helicase | DNA, RNA and nucleotide metabolism | -1 | 100 | 1524 |
| YP_005098127.1 | NC_016763_p31 | terminase | phrog_2 | terminase large subunit | head and packaging | 1 | 17996 | 19135 |
| YP_005098135.1 | NC_016763_p39 | hypothetical protein | phrog_247 | major head protein | head and packaging | 1 | 24585 | 25634 |
| YP_005098147.1 | NC_016763_p51 | DNA methylase N-4/N-6 domain protein | singleton | unknown function | unknown function | -1 | 31132 | 31560 |
| YP_005098129.1 | NC_016763_p33 | amidase | phrog_6095 | amidase | lysis | -1 | 20651 | 21301 |
| YP_005098121.1 | NC_016763_p25 | hypothetical protein | phrog_1402 | unknown function | unknown function | 1 | 16117 | 16299 |
| YP_005098150.1 | NC_016763_p54 | hypothetical protein | phrog_313 | Tail assembly chaperone | tail | 1 | 33885 | 34301 |
| YP_005098128.1 | NC_016763_p32 | structural protein | phrog_145 | portal protein | head and packaging | 1 | 19148 | 20620 |
| YP_005098116.1 | NC_016763_p20 | hypothetical protein | phrog_1040 | peptidase HslV family | other | 1 | 14045 | 14479 |
| YP_005098133.1 | NC_016763_p37 | p11.5 protein | phrog_5672 | Rz-like spanin | lysis | 1 | 23652 | 23795 |
| YP_005098124.1 | NC_016763_p28 | hypothetical protein | phrog_10956 | unknown function | unknown function | 1 | 16965 | 17147 |
| YP_005098153.1 | NC_016763_p57 | hypothetical protein | phrog_384 | virion structural protein | head and packaging | 1 | 37051 | 37494 |
| YP_005098154.1 | NC_016763_p58 | hypothetical protein | phrog_396 | minor tail protein | tail | 1 | 37491 | 38006 |
| YP_005098144.1 | NC_016763_p48 | tail protein | phrog_290 | minor tail protein | tail | 1 | 28860 | 30029 |
| YP_005098123.1 | NC_016763_p27 | hypothetical protein | singleton | unknown function | unknown function | -1 | 16708 | 16902 |
| YP_005098155.1 | NC_016763_p59 | hypothetical protein | phrog_329 | minor tail protein | tail | 1 | 38003 | 38368 |
| YP_005098101.1 | NC_016763_p5 | DNA polymerase | phrog_7766 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 2613 | 3215 |
| YP_005098151.1 | NC_016763_p55 | hypothetical protein | phrog_4557 | unknown function | unknown function | 1 | 34307 | 34666 |
| YP_005098112.1 | NC_016763_p16 | hypothetical protein | phrog_9384 | unknown function | unknown function | 1 | 12781 | 12945 |
| YP_005098131.1 | NC_016763_p35 | tail protein | phrog_3945 | Hoc-like head decoration | head and packaging | 1 | 22524 | 22982 |