Genomic map of Synechococcus phage S-CBS4 (NC_016766)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_016766
Definition
Synechococcus phage S-CBS4, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae.
DB of origin
REFSEQ
Length
69420
Host Name
Synechococcus sp.
Host domain
Bacteria
Is prophage?
undef
Number of proteins
105
%GC
50.82
Number of singletons
55
Number of paralogs
5

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_005098374.1 NC_016766_p75 exonuclease phrog_298 exonuclease DNA, RNA and nucleotide metabolism -1 55320 56081
YP_005098367.1 NC_016766_p68 hypothetical protein phrog_236 nucleotide kinase other -1 51820 52086
YP_005098324.1 NC_016766_p25 hypothetical protein singleton unknown function unknown function 1 16949 17335
YP_005098303.1 NC_016766_p4 phosphohydrolase phrog_547 phosphoesterase other 1 3148 3669
YP_005098322.1 NC_016766_p23 hypothetical protein singleton unknown function unknown function 1 15388 15957
YP_005098317.1 NC_016766_p18 hypothetical protein singleton unknown function unknown function 1 12873 13181
YP_005098300.1 NC_016766_p1 ribonucleotide reductase phrog_367 ribonucleotide reductase DNA, RNA and nucleotide metabolism 1 352 1725
YP_005098362.1 NC_016766_p63 N-acetylmuramidase phrog_3513 endolysin lysis -1 49536 50480
YP_005098318.1 NC_016766_p19 hypothetical protein singleton unknown function unknown function 1 13217 13525
YP_005098371.1 NC_016766_p72 hypothetical protein singleton unknown function unknown function 1 53710 54090
YP_005098373.1 NC_016766_p74 hypothetical protein singleton unknown function unknown function -1 55000 55296
YP_005098346.1 NC_016766_p47 tail fiber protein phrog_30390 unknown function unknown function 1 37020 38909
YP_005098401.1 NC_016766_p102 hypothetical protein singleton unknown function unknown function 1 68119 68388
YP_005098310.1 NC_016766_p11 hypothetical protein phrog_18407 unknown function unknown function -1 6699 7226
YP_005098361.1 NC_016766_p62 hypothetical protein singleton unknown function unknown function -1 49269 49517
YP_005098321.1 NC_016766_p22 head protein phrog_530 head maturation protease head and packaging 1 14239 15384
YP_005098342.1 NC_016766_p43 hypothetical protein singleton unknown function unknown function 1 31866 32543
YP_005098363.1 NC_016766_p64 hypothetical protein singleton unknown function unknown function -1 50485 50628
YP_005098329.1 NC_016766_p30 hypothetical protein singleton unknown function unknown function 1 19102 19551
YP_005098396.1 NC_016766_p97 hypothetical protein singleton unknown function unknown function 1 66095 66313
YP_005098343.1 NC_016766_p44 hypothetical protein phrog_1645 virion structural protein head and packaging 1 32550 34100
YP_005098389.1 NC_016766_p90 hypothetical protein singleton unknown function unknown function 1 63695 64090
YP_005098350.1 NC_016766_p51 phage tail protein phrog_1084 unknown function unknown function 1 42654 42995
YP_005098390.1 NC_016766_p91 hypothetical protein singleton unknown function unknown function 1 64120 64248
YP_005098314.1 NC_016766_p15 hypothetical protein phrog_29879 galactosyl transferase moron, auxiliary metabolic gene and host takeover 1 11051 11737
YP_005098391.1 NC_016766_p92 hypothetical protein singleton unknown function unknown function -1 64245 64454
YP_005098354.1 NC_016766_p55 hypothetical protein phrog_30349 unknown function unknown function 1 44596 44871
YP_005098352.1 NC_016766_p53 hypothetical protein phrog_26903 unknown function unknown function 1 43642 43974
YP_005098301.1 NC_016766_p2 hypothetical protein phrog_6799 ribonucleotide reductase class Ia beta subunit DNA, RNA and nucleotide metabolism 1 1784 2524
YP_005098377.1 NC_016766_p78 hypothetical protein singleton unknown function unknown function 1 56615 56710
YP_005098340.1 NC_016766_p41 hypothetical protein singleton unknown function unknown function 1 30632 31039
YP_005098348.1 NC_016766_p49 tail fiber protein phrog_8716 tail fiber protein tail 1 41934 42374
YP_005098380.1 NC_016766_p81 hypothetical protein singleton unknown function unknown function 1 58190 58417
YP_005098309.1 NC_016766_p10 terminase large subunit phrog_2 terminase large subunit head and packaging -1 5377 6741
YP_005098305.1 NC_016766_p6 nitrogen fixation protein-like protein phrog_1679 unknown function unknown function 1 4038 4232
YP_005098326.1 NC_016766_p27 hypothetical protein singleton unknown function unknown function 1 17643 18032
YP_005098339.1 NC_016766_p40 hypothetical protein singleton unknown function unknown function 1 30234 30629
YP_005098325.1 NC_016766_p26 hypothetical protein singleton unknown function unknown function 1 17332 17643
YP_005098308.1 NC_016766_p9 hypothetical protein singleton unknown function unknown function -1 5154 5336
YP_005098302.1 NC_016766_p3 endonuclease phrog_2633 endonuclease VII DNA, RNA and nucleotide metabolism 1 2654 3091
YP_005098338.1 NC_016766_p39 tail tip fiber protein phrog_31 central tail fiber J tail 1 28255 30234
YP_005098333.1 NC_016766_p34 tail length tape measure protein phrog_2335 tail length tape measure protein tail 1 20802 25157
YP_005098393.1 NC_016766_p94 hypothetical protein singleton unknown function unknown function -1 65228 65482
YP_005098369.1 NC_016766_p70 thymidilate synthase phrog_85 thymidylate synthase DNA, RNA and nucleotide metabolism -1 52639 53352
YP_005098384.1 NC_016766_p85 hypothetical protein singleton unknown function unknown function 1 61470 61661
YP_005098347.1 NC_016766_p48 tail fiber protein phrog_356 minor tail protein tail 1 38943 41930
YP_005098336.1 NC_016766_p37 phage tail assembly protein phrog_30 minor tail protein tail 1 26913 27620
YP_005098312.1 NC_016766_p13 hypothetical protein phrog_24776 unknown function unknown function 1 9161 9823
YP_005098397.1 NC_016766_p98 hypothetical protein singleton unknown function unknown function 1 66435 66647
YP_005098353.1 NC_016766_p54 hypothetical protein phrog_18251 unknown function unknown function 1 43980 44582
YP_005098383.1 NC_016766_p84 hypothetical protein singleton unknown function unknown function 1 61195 61473
YP_005098404.1 NC_016766_p105 hypothetical protein singleton unknown function unknown function 1 69023 69208
YP_005098372.1 NC_016766_p73 deoxycytidine triphosphate deaminase phrog_1663 dCTP deaminase DNA, RNA and nucleotide metabolism -1 54396 54965
YP_005098307.1 NC_016766_p8 hypothetical protein singleton unknown function unknown function -1 4877 5119
YP_005098320.1 NC_016766_p21 transcriptional regulator phrog_3 transcriptional repressor transcription regulation -1 13837 14127
YP_005098315.1 NC_016766_p16 methyltransferase type II phrog_32762 SAM-dependent methyltransferase other 1 11740 12282
YP_005098395.1 NC_016766_p96 hypothetical protein singleton unknown function unknown function 1 65923 66102
YP_005098337.1 NC_016766_p38 tail assembly protein phrog_32 tail assembly protein tail 1 27629 28252
YP_005098379.1 NC_016766_p80 hypothetical protein singleton unknown function unknown function -1 57833 58129
YP_005098392.1 NC_016766_p93 rare lipoprotein A phrog_7930 lipoprotein precursor other 1 64871 65227
YP_005098385.1 NC_016766_p86 hypothetical protein phrog_645 Rnase E DNA, RNA and nucleotide metabolism 1 61648 62379
YP_005098394.1 NC_016766_p95 hypothetical protein singleton unknown function unknown function -1 65522 65902
YP_005098345.1 NC_016766_p46 hypothetical protein singleton unknown function unknown function 1 36207 37016
YP_005098360.1 NC_016766_p61 hypothetical protein phrog_535 unknown function unknown function 1 48948 49157
YP_005098344.1 NC_016766_p45 hypothetical protein phrog_1645 virion structural protein head and packaging 1 34110 36197
YP_005098386.1 NC_016766_p87 hypothetical protein singleton unknown function unknown function 1 62439 62876
YP_005098403.1 NC_016766_p104 hypothetical protein singleton unknown function unknown function 1 68760 68987
YP_005098351.1 NC_016766_p52 hypothetical protein singleton unknown function unknown function 1 42998 43582
YP_005098388.1 NC_016766_p89 hypothetical protein singleton unknown function unknown function 1 63205 63639
YP_005098387.1 NC_016766_p88 hypothetical protein singleton unknown function unknown function 1 62869 63057
YP_005098365.1 NC_016766_p66 HNH nuclease phrog_2214 HNH endonuclease DNA, RNA and nucleotide metabolism 1 50951 51457
YP_005098402.1 NC_016766_p103 hypothetical protein singleton unknown function unknown function 1 68392 68670
YP_005098316.1 NC_016766_p17 HNH endonuclease phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism -1 12317 12832
YP_005098381.1 NC_016766_p82 RecA-family ATPase phrog_239 DNA primase/helicase DNA, RNA and nucleotide metabolism 1 58626 60614
YP_005098355.1 NC_016766_p56 hypothetical protein phrog_17104 unknown function unknown function 1 44868 45755
YP_005098323.1 NC_016766_p24 major capsid protein phrog_264 major head protein head and packaging 1 15970 16884
YP_005098311.1 NC_016766_p12 portal protein phrog_146 portal protein head and packaging 1 7300 9180
YP_005098331.1 NC_016766_p32 hypothetical protein singleton unknown function unknown function 1 19848 20324
YP_005098356.1 NC_016766_p57 hypothetical protein phrog_17104 unknown function unknown function 1 45752 46474
YP_005098349.1 NC_016766_p50 hypothetical protein phrog_516 unknown function unknown function 1 42457 42594
YP_005098359.1 NC_016766_p60 Srd anti-sigma factor phrog_1035 endonuclease VII DNA, RNA and nucleotide metabolism 1 48342 48917
YP_005098306.1 NC_016766_p7 hypothetical protein singleton unknown function unknown function -1 4251 4370
YP_005098400.1 NC_016766_p101 hypothetical protein singleton unknown function unknown function 1 67699 68007
YP_005098370.1 NC_016766_p71 hypothetical protein singleton unknown function unknown function -1 53349 53711
YP_005098375.1 NC_016766_p76 hypothetical protein singleton unknown function unknown function -1 56081 56272
YP_005098358.1 NC_016766_p59 hypothetical protein phrog_10356 virion structural protein head and packaging 1 47413 48276
YP_005098328.1 NC_016766_p29 hypothetical protein singleton unknown function unknown function 1 18689 19099
YP_005098304.1 NC_016766_p5 hypothetical protein singleton unknown function unknown function 1 3700 4041
YP_005098378.1 NC_016766_p79 hypothetical protein phrog_8492 Sak-like ssDNA annealing protein DNA, RNA and nucleotide metabolism -1 56898 57833
YP_005098368.1 NC_016766_p69 HNH endonuclease phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism -1 52130 52636
YP_005098382.1 NC_016766_p83 hypothetical protein singleton unknown function unknown function 1 60818 61000
YP_005098399.1 NC_016766_p100 hypothetical protein singleton unknown function unknown function -1 67152 67631
YP_005098341.1 NC_016766_p42 hypothetical protein singleton unknown function unknown function 1 31042 31866
YP_005098364.1 NC_016766_p65 hypothetical protein singleton unknown function unknown function -1 50658 50858
YP_005098332.1 NC_016766_p33 hypothetical protein singleton unknown function unknown function 1 20528 20749
YP_005098327.1 NC_016766_p28 hypothetical protein singleton unknown function unknown function 1 18104 18634
YP_005098335.1 NC_016766_p36 phage tail protein phrog_18 minor tail protein tail 1 25519 26916
YP_005098330.1 NC_016766_p31 hypothetical protein singleton unknown function unknown function 1 19544 19810
YP_005098398.1 NC_016766_p99 hypothetical protein singleton unknown function unknown function 1 66709 67074
YP_005098366.1 NC_016766_p67 hypothetical protein phrog_535 unknown function unknown function -1 51591 51830
YP_005098376.1 NC_016766_p77 hypothetical protein singleton unknown function unknown function -1 56269 56583
YP_005098334.1 NC_016766_p35 minor tail protein phrog_14 minor tail protein tail 1 25163 25516
YP_005098319.1 NC_016766_p20 hypothetical protein singleton unknown function unknown function 1 13522 13836
YP_005098313.1 NC_016766_p14 glycosyl transferase group I phrog_2170 glycosyltransferase moron, auxiliary metabolic gene and host takeover 1 9916 11058
YP_005098357.1 NC_016766_p58 hypothetical protein phrog_10356 virion structural protein head and packaging 1 46521 47369