| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_016766 |
Definition |
Synechococcus phage S-CBS4, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae. |
DB of origin |
REFSEQ |
Length |
69420 |
Host Name |
Synechococcus sp. |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
105 |
%GC |
50.82 |
Number of singletons |
55 |
Number of paralogs |
5 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_005098374.1 | NC_016766_p75 | exonuclease | phrog_298 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 55320 | 56081 |
| YP_005098367.1 | NC_016766_p68 | hypothetical protein | phrog_236 | nucleotide kinase | other | -1 | 51820 | 52086 |
| YP_005098324.1 | NC_016766_p25 | hypothetical protein | singleton | unknown function | unknown function | 1 | 16949 | 17335 |
| YP_005098303.1 | NC_016766_p4 | phosphohydrolase | phrog_547 | phosphoesterase | other | 1 | 3148 | 3669 |
| YP_005098322.1 | NC_016766_p23 | hypothetical protein | singleton | unknown function | unknown function | 1 | 15388 | 15957 |
| YP_005098317.1 | NC_016766_p18 | hypothetical protein | singleton | unknown function | unknown function | 1 | 12873 | 13181 |
| YP_005098300.1 | NC_016766_p1 | ribonucleotide reductase | phrog_367 | ribonucleotide reductase | DNA, RNA and nucleotide metabolism | 1 | 352 | 1725 |
| YP_005098362.1 | NC_016766_p63 | N-acetylmuramidase | phrog_3513 | endolysin | lysis | -1 | 49536 | 50480 |
| YP_005098318.1 | NC_016766_p19 | hypothetical protein | singleton | unknown function | unknown function | 1 | 13217 | 13525 |
| YP_005098371.1 | NC_016766_p72 | hypothetical protein | singleton | unknown function | unknown function | 1 | 53710 | 54090 |
| YP_005098373.1 | NC_016766_p74 | hypothetical protein | singleton | unknown function | unknown function | -1 | 55000 | 55296 |
| YP_005098346.1 | NC_016766_p47 | tail fiber protein | phrog_30390 | unknown function | unknown function | 1 | 37020 | 38909 |
| YP_005098401.1 | NC_016766_p102 | hypothetical protein | singleton | unknown function | unknown function | 1 | 68119 | 68388 |
| YP_005098310.1 | NC_016766_p11 | hypothetical protein | phrog_18407 | unknown function | unknown function | -1 | 6699 | 7226 |
| YP_005098361.1 | NC_016766_p62 | hypothetical protein | singleton | unknown function | unknown function | -1 | 49269 | 49517 |
| YP_005098321.1 | NC_016766_p22 | head protein | phrog_530 | head maturation protease | head and packaging | 1 | 14239 | 15384 |
| YP_005098342.1 | NC_016766_p43 | hypothetical protein | singleton | unknown function | unknown function | 1 | 31866 | 32543 |
| YP_005098363.1 | NC_016766_p64 | hypothetical protein | singleton | unknown function | unknown function | -1 | 50485 | 50628 |
| YP_005098329.1 | NC_016766_p30 | hypothetical protein | singleton | unknown function | unknown function | 1 | 19102 | 19551 |
| YP_005098396.1 | NC_016766_p97 | hypothetical protein | singleton | unknown function | unknown function | 1 | 66095 | 66313 |
| YP_005098343.1 | NC_016766_p44 | hypothetical protein | phrog_1645 | virion structural protein | head and packaging | 1 | 32550 | 34100 |
| YP_005098389.1 | NC_016766_p90 | hypothetical protein | singleton | unknown function | unknown function | 1 | 63695 | 64090 |
| YP_005098350.1 | NC_016766_p51 | phage tail protein | phrog_1084 | unknown function | unknown function | 1 | 42654 | 42995 |
| YP_005098390.1 | NC_016766_p91 | hypothetical protein | singleton | unknown function | unknown function | 1 | 64120 | 64248 |
| YP_005098314.1 | NC_016766_p15 | hypothetical protein | phrog_29879 | galactosyl transferase | moron, auxiliary metabolic gene and host takeover | 1 | 11051 | 11737 |
| YP_005098391.1 | NC_016766_p92 | hypothetical protein | singleton | unknown function | unknown function | -1 | 64245 | 64454 |
| YP_005098354.1 | NC_016766_p55 | hypothetical protein | phrog_30349 | unknown function | unknown function | 1 | 44596 | 44871 |
| YP_005098352.1 | NC_016766_p53 | hypothetical protein | phrog_26903 | unknown function | unknown function | 1 | 43642 | 43974 |
| YP_005098301.1 | NC_016766_p2 | hypothetical protein | phrog_6799 | ribonucleotide reductase class Ia beta subunit | DNA, RNA and nucleotide metabolism | 1 | 1784 | 2524 |
| YP_005098377.1 | NC_016766_p78 | hypothetical protein | singleton | unknown function | unknown function | 1 | 56615 | 56710 |
| YP_005098340.1 | NC_016766_p41 | hypothetical protein | singleton | unknown function | unknown function | 1 | 30632 | 31039 |
| YP_005098348.1 | NC_016766_p49 | tail fiber protein | phrog_8716 | tail fiber protein | tail | 1 | 41934 | 42374 |
| YP_005098380.1 | NC_016766_p81 | hypothetical protein | singleton | unknown function | unknown function | 1 | 58190 | 58417 |
| YP_005098309.1 | NC_016766_p10 | terminase large subunit | phrog_2 | terminase large subunit | head and packaging | -1 | 5377 | 6741 |
| YP_005098305.1 | NC_016766_p6 | nitrogen fixation protein-like protein | phrog_1679 | unknown function | unknown function | 1 | 4038 | 4232 |
| YP_005098326.1 | NC_016766_p27 | hypothetical protein | singleton | unknown function | unknown function | 1 | 17643 | 18032 |
| YP_005098339.1 | NC_016766_p40 | hypothetical protein | singleton | unknown function | unknown function | 1 | 30234 | 30629 |
| YP_005098325.1 | NC_016766_p26 | hypothetical protein | singleton | unknown function | unknown function | 1 | 17332 | 17643 |
| YP_005098308.1 | NC_016766_p9 | hypothetical protein | singleton | unknown function | unknown function | -1 | 5154 | 5336 |
| YP_005098302.1 | NC_016766_p3 | endonuclease | phrog_2633 | endonuclease VII | DNA, RNA and nucleotide metabolism | 1 | 2654 | 3091 |
| YP_005098338.1 | NC_016766_p39 | tail tip fiber protein | phrog_31 | central tail fiber J | tail | 1 | 28255 | 30234 |
| YP_005098333.1 | NC_016766_p34 | tail length tape measure protein | phrog_2335 | tail length tape measure protein | tail | 1 | 20802 | 25157 |
| YP_005098393.1 | NC_016766_p94 | hypothetical protein | singleton | unknown function | unknown function | -1 | 65228 | 65482 |
| YP_005098369.1 | NC_016766_p70 | thymidilate synthase | phrog_85 | thymidylate synthase | DNA, RNA and nucleotide metabolism | -1 | 52639 | 53352 |
| YP_005098384.1 | NC_016766_p85 | hypothetical protein | singleton | unknown function | unknown function | 1 | 61470 | 61661 |
| YP_005098347.1 | NC_016766_p48 | tail fiber protein | phrog_356 | minor tail protein | tail | 1 | 38943 | 41930 |
| YP_005098336.1 | NC_016766_p37 | phage tail assembly protein | phrog_30 | minor tail protein | tail | 1 | 26913 | 27620 |
| YP_005098312.1 | NC_016766_p13 | hypothetical protein | phrog_24776 | unknown function | unknown function | 1 | 9161 | 9823 |
| YP_005098397.1 | NC_016766_p98 | hypothetical protein | singleton | unknown function | unknown function | 1 | 66435 | 66647 |
| YP_005098353.1 | NC_016766_p54 | hypothetical protein | phrog_18251 | unknown function | unknown function | 1 | 43980 | 44582 |
| YP_005098383.1 | NC_016766_p84 | hypothetical protein | singleton | unknown function | unknown function | 1 | 61195 | 61473 |
| YP_005098404.1 | NC_016766_p105 | hypothetical protein | singleton | unknown function | unknown function | 1 | 69023 | 69208 |
| YP_005098372.1 | NC_016766_p73 | deoxycytidine triphosphate deaminase | phrog_1663 | dCTP deaminase | DNA, RNA and nucleotide metabolism | -1 | 54396 | 54965 |
| YP_005098307.1 | NC_016766_p8 | hypothetical protein | singleton | unknown function | unknown function | -1 | 4877 | 5119 |
| YP_005098320.1 | NC_016766_p21 | transcriptional regulator | phrog_3 | transcriptional repressor | transcription regulation | -1 | 13837 | 14127 |
| YP_005098315.1 | NC_016766_p16 | methyltransferase type II | phrog_32762 | SAM-dependent methyltransferase | other | 1 | 11740 | 12282 |
| YP_005098395.1 | NC_016766_p96 | hypothetical protein | singleton | unknown function | unknown function | 1 | 65923 | 66102 |
| YP_005098337.1 | NC_016766_p38 | tail assembly protein | phrog_32 | tail assembly protein | tail | 1 | 27629 | 28252 |
| YP_005098379.1 | NC_016766_p80 | hypothetical protein | singleton | unknown function | unknown function | -1 | 57833 | 58129 |
| YP_005098392.1 | NC_016766_p93 | rare lipoprotein A | phrog_7930 | lipoprotein precursor | other | 1 | 64871 | 65227 |
| YP_005098385.1 | NC_016766_p86 | hypothetical protein | phrog_645 | Rnase E | DNA, RNA and nucleotide metabolism | 1 | 61648 | 62379 |
| YP_005098394.1 | NC_016766_p95 | hypothetical protein | singleton | unknown function | unknown function | -1 | 65522 | 65902 |
| YP_005098345.1 | NC_016766_p46 | hypothetical protein | singleton | unknown function | unknown function | 1 | 36207 | 37016 |
| YP_005098360.1 | NC_016766_p61 | hypothetical protein | phrog_535 | unknown function | unknown function | 1 | 48948 | 49157 |
| YP_005098344.1 | NC_016766_p45 | hypothetical protein | phrog_1645 | virion structural protein | head and packaging | 1 | 34110 | 36197 |
| YP_005098386.1 | NC_016766_p87 | hypothetical protein | singleton | unknown function | unknown function | 1 | 62439 | 62876 |
| YP_005098403.1 | NC_016766_p104 | hypothetical protein | singleton | unknown function | unknown function | 1 | 68760 | 68987 |
| YP_005098351.1 | NC_016766_p52 | hypothetical protein | singleton | unknown function | unknown function | 1 | 42998 | 43582 |
| YP_005098388.1 | NC_016766_p89 | hypothetical protein | singleton | unknown function | unknown function | 1 | 63205 | 63639 |
| YP_005098387.1 | NC_016766_p88 | hypothetical protein | singleton | unknown function | unknown function | 1 | 62869 | 63057 |
| YP_005098365.1 | NC_016766_p66 | HNH nuclease | phrog_2214 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 50951 | 51457 |
| YP_005098402.1 | NC_016766_p103 | hypothetical protein | singleton | unknown function | unknown function | 1 | 68392 | 68670 |
| YP_005098316.1 | NC_016766_p17 | HNH endonuclease | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 12317 | 12832 |
| YP_005098381.1 | NC_016766_p82 | RecA-family ATPase | phrog_239 | DNA primase/helicase | DNA, RNA and nucleotide metabolism | 1 | 58626 | 60614 |
| YP_005098355.1 | NC_016766_p56 | hypothetical protein | phrog_17104 | unknown function | unknown function | 1 | 44868 | 45755 |
| YP_005098323.1 | NC_016766_p24 | major capsid protein | phrog_264 | major head protein | head and packaging | 1 | 15970 | 16884 |
| YP_005098311.1 | NC_016766_p12 | portal protein | phrog_146 | portal protein | head and packaging | 1 | 7300 | 9180 |
| YP_005098331.1 | NC_016766_p32 | hypothetical protein | singleton | unknown function | unknown function | 1 | 19848 | 20324 |
| YP_005098356.1 | NC_016766_p57 | hypothetical protein | phrog_17104 | unknown function | unknown function | 1 | 45752 | 46474 |
| YP_005098349.1 | NC_016766_p50 | hypothetical protein | phrog_516 | unknown function | unknown function | 1 | 42457 | 42594 |
| YP_005098359.1 | NC_016766_p60 | Srd anti-sigma factor | phrog_1035 | endonuclease VII | DNA, RNA and nucleotide metabolism | 1 | 48342 | 48917 |
| YP_005098306.1 | NC_016766_p7 | hypothetical protein | singleton | unknown function | unknown function | -1 | 4251 | 4370 |
| YP_005098400.1 | NC_016766_p101 | hypothetical protein | singleton | unknown function | unknown function | 1 | 67699 | 68007 |
| YP_005098370.1 | NC_016766_p71 | hypothetical protein | singleton | unknown function | unknown function | -1 | 53349 | 53711 |
| YP_005098375.1 | NC_016766_p76 | hypothetical protein | singleton | unknown function | unknown function | -1 | 56081 | 56272 |
| YP_005098358.1 | NC_016766_p59 | hypothetical protein | phrog_10356 | virion structural protein | head and packaging | 1 | 47413 | 48276 |
| YP_005098328.1 | NC_016766_p29 | hypothetical protein | singleton | unknown function | unknown function | 1 | 18689 | 19099 |
| YP_005098304.1 | NC_016766_p5 | hypothetical protein | singleton | unknown function | unknown function | 1 | 3700 | 4041 |
| YP_005098378.1 | NC_016766_p79 | hypothetical protein | phrog_8492 | Sak-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | -1 | 56898 | 57833 |
| YP_005098368.1 | NC_016766_p69 | HNH endonuclease | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 52130 | 52636 |
| YP_005098382.1 | NC_016766_p83 | hypothetical protein | singleton | unknown function | unknown function | 1 | 60818 | 61000 |
| YP_005098399.1 | NC_016766_p100 | hypothetical protein | singleton | unknown function | unknown function | -1 | 67152 | 67631 |
| YP_005098341.1 | NC_016766_p42 | hypothetical protein | singleton | unknown function | unknown function | 1 | 31042 | 31866 |
| YP_005098364.1 | NC_016766_p65 | hypothetical protein | singleton | unknown function | unknown function | -1 | 50658 | 50858 |
| YP_005098332.1 | NC_016766_p33 | hypothetical protein | singleton | unknown function | unknown function | 1 | 20528 | 20749 |
| YP_005098327.1 | NC_016766_p28 | hypothetical protein | singleton | unknown function | unknown function | 1 | 18104 | 18634 |
| YP_005098335.1 | NC_016766_p36 | phage tail protein | phrog_18 | minor tail protein | tail | 1 | 25519 | 26916 |
| YP_005098330.1 | NC_016766_p31 | hypothetical protein | singleton | unknown function | unknown function | 1 | 19544 | 19810 |
| YP_005098398.1 | NC_016766_p99 | hypothetical protein | singleton | unknown function | unknown function | 1 | 66709 | 67074 |
| YP_005098366.1 | NC_016766_p67 | hypothetical protein | phrog_535 | unknown function | unknown function | -1 | 51591 | 51830 |
| YP_005098376.1 | NC_016766_p77 | hypothetical protein | singleton | unknown function | unknown function | -1 | 56269 | 56583 |
| YP_005098334.1 | NC_016766_p35 | minor tail protein | phrog_14 | minor tail protein | tail | 1 | 25163 | 25516 |
| YP_005098319.1 | NC_016766_p20 | hypothetical protein | singleton | unknown function | unknown function | 1 | 13522 | 13836 |
| YP_005098313.1 | NC_016766_p14 | glycosyl transferase group I | phrog_2170 | glycosyltransferase | moron, auxiliary metabolic gene and host takeover | 1 | 9916 | 11058 |
| YP_005098357.1 | NC_016766_p58 | hypothetical protein | phrog_10356 | virion structural protein | head and packaging | 1 | 46521 | 47369 |