| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_017688 |
Definition |
Lactococcus Phage ASCC191, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Skunavirus. |
DB of origin |
REFSEQ |
Length |
32414 |
Host Name |
Lactococcus lactis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
59 |
%GC |
34.11 |
Number of singletons |
2 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_006201136.1 | NC_017688_p54 | hypothetical protein | phrog_12718 | unknown function | unknown function | -1 | 28858 | 29037 |
| YP_006201086.1 | NC_017688_p4 | HNH endonuclease | phrog_119 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 2627 | 2911 |
| YP_006201113.1 | NC_017688_p31 | hypothetical protein | phrog_3365 | unknown function | unknown function | -1 | 20745 | 20933 |
| YP_006201126.1 | NC_017688_p44 | early protein | phrog_1278 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 25405 | 25764 |
| YP_006201134.1 | NC_017688_p52 | DNA polymerase subunit | singleton | unknown function | unknown function | -1 | 28236 | 28574 |
| YP_006201092.1 | NC_017688_p10 | structural protein | phrog_1484 | virion structural protein | head and packaging | 1 | 6339 | 6677 |
| YP_006201115.1 | NC_017688_p33 | early protein | phrog_1225 | unknown function | unknown function | -1 | 21282 | 21590 |
| YP_006201114.1 | NC_017688_p32 | hypothetical protein | phrog_6037 | unknown function | unknown function | -1 | 21008 | 21223 |
| YP_006201083.1 | NC_017688_p1 | terminase small subunit | phrog_1437 | terminase small subunit | head and packaging | 1 | 252 | 776 |
| YP_006201105.1 | NC_017688_p23 | lysin | phrog_670 | endolysin | lysis | 1 | 17648 | 18352 |
| YP_006201140.1 | NC_017688_p58 | hypothetical protein | phrog_1436 | unknown function | unknown function | 1 | 30699 | 30830 |
| YP_006201111.1 | NC_017688_p29 | hypothetical protein | phrog_2530 | unknown function | unknown function | -1 | 20192 | 20383 |
| YP_006201084.1 | NC_017688_p2 | hypothetical protein | phrog_4501 | unknown function | unknown function | 1 | 773 | 1003 |
| YP_006201108.1 | NC_017688_p26 | hypothetical protein | phrog_1415 | unknown function | unknown function | -1 | 19500 | 19847 |
| YP_006201121.1 | NC_017688_p39 | hypothetical protein | phrog_1919 | unknown function | unknown function | -1 | 23649 | 23963 |
| YP_006201101.1 | NC_017688_p19 | hypothetical protein | phrog_1432 | tail associated lysin | tail | 1 | 15118 | 16245 |
| YP_006201102.1 | NC_017688_p20 | hypothetical protein | phrog_1434 | unknown function | unknown function | 1 | 16235 | 16528 |
| YP_006201110.1 | NC_017688_p28 | hypothetical protein | phrog_1820 | unknown function | unknown function | -1 | 20014 | 20190 |
| YP_006201117.1 | NC_017688_p35 | hypothetical protein | phrog_20711 | unknown function | unknown function | -1 | 21720 | 21908 |
| YP_006201131.1 | NC_017688_p49 | hypothetical protein | phrog_2228 | unknown function | unknown function | -1 | 26993 | 27328 |
| YP_006201122.1 | NC_017688_p40 | hypothetical protein | phrog_9706 | unknown function | unknown function | -1 | 24081 | 24266 |
| YP_006201130.1 | NC_017688_p48 | hypothetical protein | phrog_1632 | unknown function | unknown function | -1 | 26706 | 26996 |
| YP_006201120.1 | NC_017688_p38 | hypothetical protein | phrog_1825 | DNA methyltransferase | other | -1 | 23360 | 23611 |
| YP_006201125.1 | NC_017688_p43 | hypothetical protein | phrog_1295 | unknown function | unknown function | -1 | 25177 | 25392 |
| YP_006201100.1 | NC_017688_p18 | hypothetical protein | phrog_1424 | tail protein | tail | 1 | 14222 | 15118 |
| YP_006201107.1 | NC_017688_p25 | hypothetical protein | phrog_1430 | unknown function | unknown function | -1 | 19058 | 19327 |
| YP_006201103.1 | NC_017688_p21 | receptor binding protein | phrog_1630 | receptor binding tail protein | tail | 1 | 16518 | 17276 |
| YP_006201106.1 | NC_017688_p24 | hypothetical protein | phrog_3874 | transglycosylase | other | -1 | 18449 | 18997 |
| YP_006201087.1 | NC_017688_p5 | portal protein | phrog_12 | portal protein | head and packaging | 1 | 2924 | 4060 |
| YP_006201127.1 | NC_017688_p45 | sak protein | phrog_659 | Sak-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | -1 | 25769 | 26335 |
| YP_006201118.1 | NC_017688_p36 | hypothetical protein | phrog_3972 | unknown function | unknown function | -1 | 22041 | 22391 |
| YP_006201137.1 | NC_017688_p55 | hypothetical protein | phrog_4505 | unknown function | unknown function | -1 | 29038 | 29238 |
| YP_006201090.1 | NC_017688_p8 | structural protein | phrog_1428 | head-tail connector protein | connector | 1 | 5772 | 6035 |
| YP_006201139.1 | NC_017688_p57 | hypothetical protein | phrog_1952 | unknown function | unknown function | 1 | 30566 | 30694 |
| YP_006201093.1 | NC_017688_p11 | structural protein | phrog_1440 | virion structural protein | head and packaging | 1 | 6668 | 7033 |
| YP_006201109.1 | NC_017688_p27 | hypothetical protein | phrog_1441 | unknown function | unknown function | -1 | 19847 | 20014 |
| YP_006201133.1 | NC_017688_p51 | DNA polymerase subunit | phrog_1284 | unknown function | unknown function | -1 | 27677 | 28243 |
| YP_006201138.1 | NC_017688_p56 | HNH endonuclease | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 29933 | 30289 |
| YP_006201098.1 | NC_017688_p16 | structural protein | phrog_1421 | virion structural protein | head and packaging | 1 | 10720 | 11232 |
| YP_006201096.1 | NC_017688_p14 | major capsid protein | phrog_1433 | major tail protein | tail | 1 | 9465 | 10370 |
| YP_006201128.1 | NC_017688_p46 | HNH endonuclease | singleton | unknown function | unknown function | -1 | 26332 | 26499 |
| YP_006201094.1 | NC_017688_p12 | neck passage structure protein | phrog_7918 | neck passage structure protein | connector | 1 | 7090 | 9270 |
| YP_006201129.1 | NC_017688_p47 | hypothetical protein | phrog_1449 | unknown function | unknown function | -1 | 26486 | 26752 |
| YP_006201124.1 | NC_017688_p42 | hypothetical protein | phrog_13331 | unknown function | unknown function | -1 | 24860 | 25180 |
| YP_006201135.1 | NC_017688_p53 | hypothetical protein | phrog_2541 | unknown function | unknown function | -1 | 28567 | 28788 |
| YP_006201123.1 | NC_017688_p41 | hypothetical protein | phrog_1317 | unknown function | unknown function | -1 | 24307 | 24840 |
| YP_006201085.1 | NC_017688_p3 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 1015 | 2637 |
| YP_006201089.1 | NC_017688_p7 | structural protein | phrog_1393 | minor head protein | head and packaging | 1 | 4570 | 5751 |
| YP_006201116.1 | NC_017688_p34 | hypothetical protein | phrog_1508 | unknown function | unknown function | -1 | 21590 | 21709 |
| YP_006201132.1 | NC_017688_p50 | hypothetical protein | phrog_1405 | unknown function | unknown function | -1 | 27421 | 27684 |
| YP_006201112.1 | NC_017688_p30 | early protein | phrog_1509 | unknown function | unknown function | -1 | 20425 | 20682 |
| YP_006201104.1 | NC_017688_p22 | bifunctional anti-holin / holin | phrog_1379 | unknown function | unknown function | 1 | 17298 | 17651 |
| YP_006201141.1 | NC_017688_p59 | Holliday junction endonuclease | phrog_827 | Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 30827 | 31306 |
| YP_006201095.1 | NC_017688_p13 | structural protein | phrog_15944 | virion structural protein | head and packaging | 1 | 9307 | 9444 |
| YP_006201097.1 | NC_017688_p15 | structural protein | phrog_1420 | virion structural protein | head and packaging | 1 | 10425 | 10700 |
| YP_006201119.1 | NC_017688_p37 | hypothetical protein | phrog_56 | DNA methyltransferase | other | -1 | 22453 | 23367 |
| YP_006201088.1 | NC_017688_p6 | protease | phrog_80 | head maturation protease | head and packaging | 1 | 4041 | 4577 |
| YP_006201091.1 | NC_017688_p9 | structural protein | phrog_1429 | virion structural protein | head and packaging | 1 | 6035 | 6349 |
| YP_006201099.1 | NC_017688_p17 | tape measure protein | phrog_58 | tail length tape measure protein | tail | 1 | 11232 | 14222 |