| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_017864 |
Definition |
Pseudomonas phage vB_Pae-Kakheti25, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Septimatrevirus. |
DB of origin |
REFSEQ |
Length |
42844 |
Host Name |
Pseudomonas aeruginosa |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
58 |
%GC |
53.8 |
Number of singletons |
1 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_006299918.1 | NC_017864_p54 | hypothetical protein | phrog_16782 | unknown function | unknown function | 1 | 40795 | 40962 |
| YP_006299873.1 | NC_017864_p9 | F-like head morphogenesis protein | phrog_241 | head morphogenesis | head and packaging | 1 | 5235 | 6329 |
| YP_006299890.1 | NC_017864_p26 | central tail hub | phrog_1101 | tail protein | tail | 1 | 21234 | 23675 |
| YP_006299910.1 | NC_017864_p46 | hypothetical protein | phrog_11401 | unknown function | unknown function | 1 | 38257 | 38631 |
| YP_006299891.1 | NC_017864_p27 | DNA polymerase | phrog_1252 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 23676 | 25727 |
| YP_006299902.1 | NC_017864_p38 | replicative primase/helicase | phrog_3022 | DNA primase | DNA, RNA and nucleotide metabolism | 1 | 33320 | 35641 |
| YP_006299920.1 | NC_017864_p56 | hypothetical protein | phrog_9241 | unknown function | unknown function | 1 | 41426 | 41809 |
| YP_006299889.1 | NC_017864_p25 | virion protein | phrog_778 | tail assembly protein | tail | 1 | 20406 | 21230 |
| YP_006299888.1 | NC_017864_p24 | virion protein | phrog_1082 | tail assembly protein | tail | 1 | 18691 | 20406 |
| YP_006299880.1 | NC_017864_p16 | virion protein | phrog_179 | tail terminator | connector | 1 | 9888 | 10343 |
| YP_006299908.1 | NC_017864_p44 | hypothetical protein | phrog_10560 | unknown function | unknown function | 1 | 37612 | 37854 |
| YP_006299905.1 | NC_017864_p41 | hypothetical protein | phrog_9154 | unknown function | unknown function | 1 | 36639 | 36842 |
| YP_006299894.1 | NC_017864_p30 | DEAD box helicase | phrog_16 | DNA helicase | DNA, RNA and nucleotide metabolism | -1 | 27097 | 28752 |
| YP_006299907.1 | NC_017864_p43 | hypothetical protein | phrog_20489 | unknown function | unknown function | 1 | 37458 | 37625 |
| YP_006299886.1 | NC_017864_p22 | virion protein | phrog_687 | structural protein | head and packaging | 1 | 16772 | 17734 |
| YP_006299914.1 | NC_017864_p50 | hypothetical protein | phrog_13844 | unknown function | unknown function | 1 | 39646 | 39825 |
| YP_006299904.1 | NC_017864_p40 | hypothetical protein | singleton | unknown function | unknown function | -1 | 36190 | 36618 |
| YP_006299884.1 | NC_017864_p20 | tail completion protein | phrog_169 | tail completion or Neck1 protein | connector | 1 | 12717 | 13151 |
| YP_006299896.1 | NC_017864_p32 | hypothetical protein | phrog_34762 | unknown function | unknown function | -1 | 30011 | 30172 |
| YP_006299921.1 | NC_017864_p57 | hypothetical protein | phrog_6168 | unknown function | unknown function | 1 | 41844 | 42053 |
| YP_006299898.1 | NC_017864_p34 | RecA | phrog_124 | Sak4-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | -1 | 31159 | 31875 |
| YP_006299917.1 | NC_017864_p53 | hypothetical protein | phrog_9844 | unknown function | unknown function | 1 | 40491 | 40724 |
| YP_006299906.1 | NC_017864_p42 | hypothetical protein | phrog_10287 | unknown function | unknown function | 1 | 37186 | 37461 |
| YP_006299897.1 | NC_017864_p33 | member of DUF669 phage protein family | phrog_6015 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 30354 | 31100 |
| YP_006299883.1 | NC_017864_p19 | tail chaperonin | phrog_313 | Tail assembly chaperone | tail | 1 | 11955 | 12383 |
| YP_006299874.1 | NC_017864_p10 | scaffold protein | phrog_206 | head scaffolding protein | head and packaging | 1 | 6366 | 7085 |
| YP_006299913.1 | NC_017864_p49 | hypothetical protein | phrog_8564 | unknown function | unknown function | 1 | 39446 | 39649 |
| YP_006299893.1 | NC_017864_p29 | hypothetical protein | phrog_11184 | unknown function | unknown function | -1 | 26865 | 27092 |
| YP_006299912.1 | NC_017864_p48 | hypothetical protein | phrog_824 | unknown function | unknown function | 1 | 38910 | 39446 |
| YP_006299871.1 | NC_017864_p7 | large terminase subunit | phrog_2 | terminase large subunit | head and packaging | 1 | 2109 | 3704 |
| YP_006299877.1 | NC_017864_p13 | virion protein | phrog_10405 | virion structural protein | head and packaging | 1 | 8605 | 8976 |
| YP_006299911.1 | NC_017864_p47 | hypothetical protein | phrog_54 | DksA-like zinc-finger protein | other | 1 | 38692 | 38913 |
| YP_006299878.1 | NC_017864_p14 | virion protein | phrog_477 | head-tail adaptor Ad1 | connector | 1 | 8989 | 9507 |
| YP_006299916.1 | NC_017864_p52 | hypothetical protein | phrog_14614 | endolysin | lysis | 1 | 40208 | 40498 |
| YP_006299872.1 | NC_017864_p8 | portal protein | phrog_145 | portal protein | head and packaging | 1 | 3718 | 5223 |
| YP_006299869.1 | NC_017864_p5 | Rz1 | phrog_1275 | Rz-like spanin | lysis | 1 | 1301 | 1582 |
| YP_006299915.1 | NC_017864_p51 | hypothetical protein | phrog_14000 | unknown function | unknown function | 1 | 39886 | 40191 |
| YP_006299882.1 | NC_017864_p18 | tail chaperonin | phrog_8233 | tail assembly chaperone | tail | 1 | 11955 | 12748 |
| YP_006299901.1 | NC_017864_p37 | hypothetical protein | phrog_13059 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 33142 | 33330 |
| YP_006299876.1 | NC_017864_p12 | hypothetical protein | phrog_9062 | unknown function | unknown function | 1 | 8135 | 8539 |
| YP_006299919.1 | NC_017864_p55 | dCMP deaminase | phrog_174 | dCMP deaminase | DNA, RNA and nucleotide metabolism | 1 | 40953 | 41420 |
| YP_006299900.1 | NC_017864_p36 | MazG | phrog_229 | MazG-like pyrophosphatase | other | -1 | 32447 | 33004 |
| YP_006299867.1 | NC_017864_p3 | endolysin | phrog_1259 | baseplate hub subunit and tail lysozyme | tail | 1 | 524 | 1069 |
| YP_006299875.1 | NC_017864_p11 | major capsid protein | phrog_247 | major head protein | head and packaging | 1 | 7088 | 8065 |
| YP_006299881.1 | NC_017864_p17 | major tail tube protein | phrog_290 | minor tail protein | tail | 1 | 10356 | 11891 |
| YP_006299866.1 | NC_017864_p2 | holin | phrog_1356 | holin | lysis | 1 | 265 | 531 |
| YP_006299899.1 | NC_017864_p35 | hypothetical protein | phrog_2480 | unknown function | unknown function | -1 | 31930 | 32370 |
| YP_006299903.1 | NC_017864_p39 | hypothetical protein | phrog_3633 | unknown function | unknown function | 1 | 35794 | 36090 |
| YP_006299885.1 | NC_017864_p21 | tape measure protein | phrog_3336 | tail length tape measure protein | tail | 1 | 13157 | 16771 |
| YP_006299865.1 | NC_017864_p1 | member of phage protein family found in lysis cassettes | phrog_462 | lipoprotein | other | 1 | 14 | 268 |
| YP_006299892.1 | NC_017864_p28 | replicative clamp | phrog_947 | DNA polymerase processivity factor | DNA, RNA and nucleotide metabolism | -1 | 25739 | 26881 |
| YP_006299870.1 | NC_017864_p6 | possible small terminase subunit | phrog_5334 | terminase small subunit | head and packaging | 1 | 1640 | 2128 |
| YP_006299868.1 | NC_017864_p4 | Rz | phrog_1026 | Rz-like spanin | lysis | 1 | 1081 | 1386 |
| YP_006299895.1 | NC_017864_p31 | RecB exonuclease | phrog_1990 | Cas4-domain exonuclease | DNA, RNA and nucleotide metabolism | -1 | 28745 | 29842 |
| YP_006299909.1 | NC_017864_p45 | hypothetical protein | phrog_22782 | unknown function | unknown function | 1 | 37939 | 38208 |
| YP_006299879.1 | NC_017864_p15 | virion protein | phrog_161 | head closure Hc1 | connector | 1 | 9511 | 9891 |
| YP_006299922.1 | NC_017864_p58 | hypothetical protein | phrog_7597 | unknown function | unknown function | 1 | 42137 | 42709 |
| YP_006299887.1 | NC_017864_p23 | virion protein | phrog_687 | structural protein | head and packaging | 1 | 17734 | 18687 |