Genomic map of Pseudomonas phage tf (NC_017971)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_017971
Definition
Pseudomonas phage tf complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae; Krylovvirus; Pseudomonas virus tf.
DB of origin
REFSEQ
Length
46271
Host Name
Pseudomonas putida
Host domain
Bacteria
Is prophage?
undef
Number of proteins
72
%GC
53.2
Number of singletons
29
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_006382481.2 NC_017971_p21 amidoligase phrog_7631 amidoligase enzyme other 1 8935 10116
YP_006382469.1 NC_017971_p9 hypothetical protein singleton unknown function unknown function 1 3415 3498
YP_006382462.1 NC_017971_p1 hypothetical protein singleton unknown function unknown function 1 1130 1489
YP_006659986.1 NC_017971_p48 hypothetical protein singleton unknown function unknown function 1 24598 24825
YP_006382464.1 NC_017971_p4 hypothetical protein singleton unknown function unknown function 1 2103 2396
YP_006382519.1 NC_017971_p61 hypothetical protein phrog_33692 unknown function unknown function -1 34736 34999
YP_006382473.1 NC_017971_p13 hypothetical protein phrog_8299 unknown function unknown function 1 4390 4767
YP_006382498.1 NC_017971_p38 DNA polymerase phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism 1 18218 19858
YP_006382496.1 NC_017971_p36 hypothetical protein singleton unknown function unknown function 1 17664 17801
YP_006382467.1 NC_017971_p7 hypothetical protein singleton unknown function unknown function 1 2938 3171
YP_006382510.1 NC_017971_p52 phage particle protein phrog_7725 virion structural protein head and packaging -1 28462 29925
YP_006659977.1 NC_017971_p11 hypothetical protein singleton unknown function unknown function 1 3982 4176
YP_006659982.1 NC_017971_p33 hypothetical protein singleton unknown function unknown function 1 17101 17223
YP_006382529.1 NC_017971_p71 lysozyme phrog_7 endolysin lysis -1 44612 45112
YP_006382523.1 NC_017971_p65 hypothetical protein phrog_3982 unknown function unknown function -1 38453 38785
YP_006382508.1 NC_017971_p50 hypothetical protein singleton unknown function unknown function -1 25132 25395
YP_006382465.1 NC_017971_p5 hypothetical protein singleton unknown function unknown function 1 2396 2506
YP_006659988.1 NC_017971_p56 hypothetical protein singleton unknown function unknown function -1 31747 32028
YP_006382515.1 NC_017971_p57 phage particle protein phrog_3287 virion structural protein head and packaging -1 32028 33587
YP_006382527.1 NC_017971_p69 portal protein phrog_1216 portal protein head and packaging -1 41053 43173
YP_006659978.1 NC_017971_p12 hypothetical protein singleton unknown function unknown function 1 4177 4377
YP_006382487.1 NC_017971_p25 hypothetical protein phrog_2520 gamma-glutamyl cyclotransferase moron, auxiliary metabolic gene and host takeover 1 13144 13587
YP_006382483.1 NC_017971_p23 hypothetical protein phrog_9335 unknown function unknown function 1 11740 11949
YP_006659979.1 NC_017971_p14 hypothetical protein phrog_27008 unknown function unknown function 1 5017 5271
YP_006382503.1 NC_017971_p44 5'-3' exonuclease phrog_107 exonuclease DNA, RNA and nucleotide metabolism 1 21727 22650
YP_006382501.1 NC_017971_p41 hypothetical protein phrog_5033 endolysin; inhibits RNA polymerase lysis 1 20795 21139
YP_006382516.1 NC_017971_p58 tail fiber protein phrog_5795 tail protein tail -1 33591 34244
YP_006659984.1 NC_017971_p45 hypothetical protein phrog_7967 unknown function unknown function 1 22583 23506
YP_006382493.1 NC_017971_p32 hypothetical protein phrog_7045 holin lysis 1 16746 17042
YP_006382478.1 NC_017971_p18 hypothetical protein phrog_7973 unknown function unknown function 1 6666 7589
YP_006659976.1 NC_017971_p3 hypothetical protein singleton unknown function unknown function 1 1977 2087
YP_006382512.1 NC_017971_p54 phage particle protein phrog_7477 unknown function unknown function -1 30312 31250
YP_006382500.1 NC_017971_p40 DNA binding protein phrog_112 Gp2.5-like ssDNA binding protein and ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 20115 20726
YP_006659980.1 NC_017971_p30 hypothetical protein singleton unknown function unknown function 1 16445 16591
YP_006382463.1 NC_017971_p2 hypothetical protein phrog_1448 unknown function unknown function 1 1501 1980
YP_006382525.1 NC_017971_p67 scaffolding protein phrog_3927 head scaffolding protein head and packaging -1 39810 40814
YP_006382475.1 NC_017971_p15 hypothetical protein singleton unknown function unknown function 1 5268 5483
YP_006659981.1 NC_017971_p31 hypothetical protein singleton unknown function unknown function 1 16588 16752
YP_006382511.1 NC_017971_p53 hypothetical protein singleton unknown function unknown function -1 29935 30315
YP_006382480.1 NC_017971_p20 hypothetical protein phrog_4877 unknown function unknown function 1 8378 8959
YP_006382477.1 NC_017971_p17 hypothetical protein singleton unknown function unknown function 1 5776 6669
YP_006382470.1 NC_017971_p10 hypothetical protein singleton unknown function unknown function 1 3726 4001
YP_006382494.1 NC_017971_p34 hypothetical protein singleton unknown function unknown function 1 17220 17426
YP_006382482.1 NC_017971_p22 glutamine amidotransferase phrog_4736 L-glutamine-D-fructose-6-phosphate aminotransferase other 1 10145 11740
YP_006659983.1 NC_017971_p43 hypothetical protein singleton unknown function unknown function 1 21494 21730
YP_006382479.1 NC_017971_p19 hypothetical protein phrog_3815 COOH.NH2 ligase other 1 7593 8381
YP_006382507.1 NC_017971_p49 hypothetical protein singleton unknown function unknown function 1 24806 25027
YP_006659985.1 NC_017971_p47 hypothetical protein phrog_221 metallo-phosphoesterase other 1 23785 24546
YP_006382526.1 NC_017971_p68 hypothetical protein phrog_8161 unknown function unknown function -1 40814 41053
YP_006382522.1 NC_017971_p64 phage particle protein phrog_2941 virion structural protein head and packaging -1 37837 38517
YP_006382491.1 NC_017971_p29 hypothetical protein phrog_11010 unknown function unknown function 1 16115 16429
YP_006382489.2 NC_017971_p27 primase/helicase phrog_239 DNA primase/helicase DNA, RNA and nucleotide metabolism 1 13952 15655
YP_006382517.1 NC_017971_p59 hypothetical protein phrog_8140 unknown function unknown function -1 34234 34440
YP_006382499.1 NC_017971_p39 hypothetical protein phrog_5428 unknown function unknown function 1 19868 20059
YP_006382505.2 NC_017971_p46 endonuclease phrog_945 endonuclease DNA, RNA and nucleotide metabolism 1 23370 23801
YP_006382466.1 NC_017971_p6 hypothetical protein singleton unknown function unknown function 1 2506 2694
YP_006382520.1 NC_017971_p62 hypothetical protein singleton unknown function unknown function -1 35010 35177
YP_006382521.1 NC_017971_p63 phage particle protein associated with glycosidase activity singleton unknown function unknown function -1 35186 37837
YP_006382488.1 NC_017971_p26 hypothetical protein phrog_8197 unknown function unknown function 1 13584 13955
YP_006382502.1 NC_017971_p42 hypothetical protein phrog_8565 unknown function unknown function 1 21235 21618
YP_006382468.1 NC_017971_p8 hypothetical protein singleton unknown function unknown function 1 3175 3411
YP_006382486.1 NC_017971_p24 hypothetical protein phrog_2599 ribosomal protein S6 glutaminyl transferase moron, auxiliary metabolic gene and host takeover 1 12275 13147
YP_006382495.1 NC_017971_p35 hypothetical protein singleton unknown function unknown function 1 17426 17662
YP_006382497.1 NC_017971_p37 hypothetical protein singleton unknown function unknown function 1 17801 18208
YP_006382509.1 NC_017971_p51 phage particle protein phrog_6958 virion structural protein head and packaging -1 25395 28460
YP_006382490.1 NC_017971_p28 3'-5' exonuclease phrog_403 DNA polymerase exonuclease subunit DNA, RNA and nucleotide metabolism 1 15630 16136
YP_006382524.1 NC_017971_p66 major head protein phrog_1328 major head protein head and packaging -1 38841 39797
YP_006382518.1 NC_017971_p60 hypothetical protein phrog_33692 unknown function unknown function -1 34452 34739
YP_006382530.1 NC_017971_p72 terminase small subunit phrog_51 terminase small subunit head and packaging -1 45045 45503
YP_006382476.1 NC_017971_p16 hypothetical protein singleton unknown function unknown function 1 5493 5714
YP_006659987.1 NC_017971_p55 hypothetical protein phrog_7642 unknown function unknown function -1 31231 31665
YP_006382528.1 NC_017971_p70 terminase large subunit phrog_2 terminase large subunit head and packaging -1 43173 44612