| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_017971 |
Definition |
Pseudomonas phage tf complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae; Krylovvirus; Pseudomonas virus tf. |
DB of origin |
REFSEQ |
Length |
46271 |
Host Name |
Pseudomonas putida |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
72 |
%GC |
53.2 |
Number of singletons |
29 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_006382481.2 | NC_017971_p21 | amidoligase | phrog_7631 | amidoligase enzyme | other | 1 | 8935 | 10116 |
| YP_006382469.1 | NC_017971_p9 | hypothetical protein | singleton | unknown function | unknown function | 1 | 3415 | 3498 |
| YP_006382462.1 | NC_017971_p1 | hypothetical protein | singleton | unknown function | unknown function | 1 | 1130 | 1489 |
| YP_006659986.1 | NC_017971_p48 | hypothetical protein | singleton | unknown function | unknown function | 1 | 24598 | 24825 |
| YP_006382464.1 | NC_017971_p4 | hypothetical protein | singleton | unknown function | unknown function | 1 | 2103 | 2396 |
| YP_006382519.1 | NC_017971_p61 | hypothetical protein | phrog_33692 | unknown function | unknown function | -1 | 34736 | 34999 |
| YP_006382473.1 | NC_017971_p13 | hypothetical protein | phrog_8299 | unknown function | unknown function | 1 | 4390 | 4767 |
| YP_006382498.1 | NC_017971_p38 | DNA polymerase | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 18218 | 19858 |
| YP_006382496.1 | NC_017971_p36 | hypothetical protein | singleton | unknown function | unknown function | 1 | 17664 | 17801 |
| YP_006382467.1 | NC_017971_p7 | hypothetical protein | singleton | unknown function | unknown function | 1 | 2938 | 3171 |
| YP_006382510.1 | NC_017971_p52 | phage particle protein | phrog_7725 | virion structural protein | head and packaging | -1 | 28462 | 29925 |
| YP_006659977.1 | NC_017971_p11 | hypothetical protein | singleton | unknown function | unknown function | 1 | 3982 | 4176 |
| YP_006659982.1 | NC_017971_p33 | hypothetical protein | singleton | unknown function | unknown function | 1 | 17101 | 17223 |
| YP_006382529.1 | NC_017971_p71 | lysozyme | phrog_7 | endolysin | lysis | -1 | 44612 | 45112 |
| YP_006382523.1 | NC_017971_p65 | hypothetical protein | phrog_3982 | unknown function | unknown function | -1 | 38453 | 38785 |
| YP_006382508.1 | NC_017971_p50 | hypothetical protein | singleton | unknown function | unknown function | -1 | 25132 | 25395 |
| YP_006382465.1 | NC_017971_p5 | hypothetical protein | singleton | unknown function | unknown function | 1 | 2396 | 2506 |
| YP_006659988.1 | NC_017971_p56 | hypothetical protein | singleton | unknown function | unknown function | -1 | 31747 | 32028 |
| YP_006382515.1 | NC_017971_p57 | phage particle protein | phrog_3287 | virion structural protein | head and packaging | -1 | 32028 | 33587 |
| YP_006382527.1 | NC_017971_p69 | portal protein | phrog_1216 | portal protein | head and packaging | -1 | 41053 | 43173 |
| YP_006659978.1 | NC_017971_p12 | hypothetical protein | singleton | unknown function | unknown function | 1 | 4177 | 4377 |
| YP_006382487.1 | NC_017971_p25 | hypothetical protein | phrog_2520 | gamma-glutamyl cyclotransferase | moron, auxiliary metabolic gene and host takeover | 1 | 13144 | 13587 |
| YP_006382483.1 | NC_017971_p23 | hypothetical protein | phrog_9335 | unknown function | unknown function | 1 | 11740 | 11949 |
| YP_006659979.1 | NC_017971_p14 | hypothetical protein | phrog_27008 | unknown function | unknown function | 1 | 5017 | 5271 |
| YP_006382503.1 | NC_017971_p44 | 5'-3' exonuclease | phrog_107 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 21727 | 22650 |
| YP_006382501.1 | NC_017971_p41 | hypothetical protein | phrog_5033 | endolysin; inhibits RNA polymerase | lysis | 1 | 20795 | 21139 |
| YP_006382516.1 | NC_017971_p58 | tail fiber protein | phrog_5795 | tail protein | tail | -1 | 33591 | 34244 |
| YP_006659984.1 | NC_017971_p45 | hypothetical protein | phrog_7967 | unknown function | unknown function | 1 | 22583 | 23506 |
| YP_006382493.1 | NC_017971_p32 | hypothetical protein | phrog_7045 | holin | lysis | 1 | 16746 | 17042 |
| YP_006382478.1 | NC_017971_p18 | hypothetical protein | phrog_7973 | unknown function | unknown function | 1 | 6666 | 7589 |
| YP_006659976.1 | NC_017971_p3 | hypothetical protein | singleton | unknown function | unknown function | 1 | 1977 | 2087 |
| YP_006382512.1 | NC_017971_p54 | phage particle protein | phrog_7477 | unknown function | unknown function | -1 | 30312 | 31250 |
| YP_006382500.1 | NC_017971_p40 | DNA binding protein | phrog_112 | Gp2.5-like ssDNA binding protein and ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 20115 | 20726 |
| YP_006659980.1 | NC_017971_p30 | hypothetical protein | singleton | unknown function | unknown function | 1 | 16445 | 16591 |
| YP_006382463.1 | NC_017971_p2 | hypothetical protein | phrog_1448 | unknown function | unknown function | 1 | 1501 | 1980 |
| YP_006382525.1 | NC_017971_p67 | scaffolding protein | phrog_3927 | head scaffolding protein | head and packaging | -1 | 39810 | 40814 |
| YP_006382475.1 | NC_017971_p15 | hypothetical protein | singleton | unknown function | unknown function | 1 | 5268 | 5483 |
| YP_006659981.1 | NC_017971_p31 | hypothetical protein | singleton | unknown function | unknown function | 1 | 16588 | 16752 |
| YP_006382511.1 | NC_017971_p53 | hypothetical protein | singleton | unknown function | unknown function | -1 | 29935 | 30315 |
| YP_006382480.1 | NC_017971_p20 | hypothetical protein | phrog_4877 | unknown function | unknown function | 1 | 8378 | 8959 |
| YP_006382477.1 | NC_017971_p17 | hypothetical protein | singleton | unknown function | unknown function | 1 | 5776 | 6669 |
| YP_006382470.1 | NC_017971_p10 | hypothetical protein | singleton | unknown function | unknown function | 1 | 3726 | 4001 |
| YP_006382494.1 | NC_017971_p34 | hypothetical protein | singleton | unknown function | unknown function | 1 | 17220 | 17426 |
| YP_006382482.1 | NC_017971_p22 | glutamine amidotransferase | phrog_4736 | L-glutamine-D-fructose-6-phosphate aminotransferase | other | 1 | 10145 | 11740 |
| YP_006659983.1 | NC_017971_p43 | hypothetical protein | singleton | unknown function | unknown function | 1 | 21494 | 21730 |
| YP_006382479.1 | NC_017971_p19 | hypothetical protein | phrog_3815 | COOH.NH2 ligase | other | 1 | 7593 | 8381 |
| YP_006382507.1 | NC_017971_p49 | hypothetical protein | singleton | unknown function | unknown function | 1 | 24806 | 25027 |
| YP_006659985.1 | NC_017971_p47 | hypothetical protein | phrog_221 | metallo-phosphoesterase | other | 1 | 23785 | 24546 |
| YP_006382526.1 | NC_017971_p68 | hypothetical protein | phrog_8161 | unknown function | unknown function | -1 | 40814 | 41053 |
| YP_006382522.1 | NC_017971_p64 | phage particle protein | phrog_2941 | virion structural protein | head and packaging | -1 | 37837 | 38517 |
| YP_006382491.1 | NC_017971_p29 | hypothetical protein | phrog_11010 | unknown function | unknown function | 1 | 16115 | 16429 |
| YP_006382489.2 | NC_017971_p27 | primase/helicase | phrog_239 | DNA primase/helicase | DNA, RNA and nucleotide metabolism | 1 | 13952 | 15655 |
| YP_006382517.1 | NC_017971_p59 | hypothetical protein | phrog_8140 | unknown function | unknown function | -1 | 34234 | 34440 |
| YP_006382499.1 | NC_017971_p39 | hypothetical protein | phrog_5428 | unknown function | unknown function | 1 | 19868 | 20059 |
| YP_006382505.2 | NC_017971_p46 | endonuclease | phrog_945 | endonuclease | DNA, RNA and nucleotide metabolism | 1 | 23370 | 23801 |
| YP_006382466.1 | NC_017971_p6 | hypothetical protein | singleton | unknown function | unknown function | 1 | 2506 | 2694 |
| YP_006382520.1 | NC_017971_p62 | hypothetical protein | singleton | unknown function | unknown function | -1 | 35010 | 35177 |
| YP_006382521.1 | NC_017971_p63 | phage particle protein associated with glycosidase activity | singleton | unknown function | unknown function | -1 | 35186 | 37837 |
| YP_006382488.1 | NC_017971_p26 | hypothetical protein | phrog_8197 | unknown function | unknown function | 1 | 13584 | 13955 |
| YP_006382502.1 | NC_017971_p42 | hypothetical protein | phrog_8565 | unknown function | unknown function | 1 | 21235 | 21618 |
| YP_006382468.1 | NC_017971_p8 | hypothetical protein | singleton | unknown function | unknown function | 1 | 3175 | 3411 |
| YP_006382486.1 | NC_017971_p24 | hypothetical protein | phrog_2599 | ribosomal protein S6 glutaminyl transferase | moron, auxiliary metabolic gene and host takeover | 1 | 12275 | 13147 |
| YP_006382495.1 | NC_017971_p35 | hypothetical protein | singleton | unknown function | unknown function | 1 | 17426 | 17662 |
| YP_006382497.1 | NC_017971_p37 | hypothetical protein | singleton | unknown function | unknown function | 1 | 17801 | 18208 |
| YP_006382509.1 | NC_017971_p51 | phage particle protein | phrog_6958 | virion structural protein | head and packaging | -1 | 25395 | 28460 |
| YP_006382490.1 | NC_017971_p28 | 3'-5' exonuclease | phrog_403 | DNA polymerase exonuclease subunit | DNA, RNA and nucleotide metabolism | 1 | 15630 | 16136 |
| YP_006382524.1 | NC_017971_p66 | major head protein | phrog_1328 | major head protein | head and packaging | -1 | 38841 | 39797 |
| YP_006382518.1 | NC_017971_p60 | hypothetical protein | phrog_33692 | unknown function | unknown function | -1 | 34452 | 34739 |
| YP_006382530.1 | NC_017971_p72 | terminase small subunit | phrog_51 | terminase small subunit | head and packaging | -1 | 45045 | 45503 |
| YP_006382476.1 | NC_017971_p16 | hypothetical protein | singleton | unknown function | unknown function | 1 | 5493 | 5714 |
| YP_006659987.1 | NC_017971_p55 | hypothetical protein | phrog_7642 | unknown function | unknown function | -1 | 31231 | 31665 |
| YP_006382528.1 | NC_017971_p70 | terminase large subunit | phrog_2 | terminase large subunit | head and packaging | -1 | 43173 | 44612 |