Genomic map of Mycobacterium phage SWU1 (NC_017973)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_017973
Definition
Mycobacterium phage SWU1, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Fromanvirus.
DB of origin
REFSEQ
Length
52474
Host Name
Mycobacterium smegmatis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
94
%GC
62.4
Number of singletons
3
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_006382943.1 NC_017973_p22 hypothetical protein phrog_3656 tail assembly chaperone tail 1 15454 15759
YP_006382935.1 NC_017973_p14 major head subunit phrog_10 major head protein head and packaging 1 11321 12286
YP_006382987.1 NC_017973_p66 hypothetical protein phrog_478 site-specific recombination directionality factor RDF integration and excision -1 40549 40935
YP_006382976.1 NC_017973_p55 hypothetical protein phrog_22 thioredoxin domain DNA, RNA and nucleotide metabolism -1 37503 37775
YP_006382941.1 NC_017973_p20 major tail subunit phrog_117 major tail protein tail 1 14232 14828
YP_006383000.1 NC_017973_p79 hypothetical protein phrog_1477 unknown function unknown function -1 46064 46195
YP_006382924.1 NC_017973_p3 hypothetical protein phrog_8551 unknown function unknown function 1 2077 2328
YP_006382970.1 NC_017973_p49 hypothetical protein phrog_2046 unknown function unknown function -1 35046 35249
YP_006382923.1 NC_017973_p2 hypothetical protein phrog_8314 unknown function unknown function 1 1298 2077
YP_006382928.1 NC_017973_p7 lysinA phrog_317 endolysin lysis 1 4574 5452
YP_006382972.1 NC_017973_p51 hypothetical protein phrog_354 sigma-K factor transcription regulation -1 35415 36119
YP_006383014.1 NC_017973_p93 hypothetical protein phrog_19104 unknown function unknown function -1 50660 50824
YP_006382946.1 NC_017973_p25 minor tail subunit phrog_110 minor tail protein tail 1 19271 21085
YP_006382990.1 NC_017973_p69 hypothetical protein phrog_2731 unknown function unknown function -1 42393 42524
YP_006382965.1 NC_017973_p44 DNA binding protein phrog_517 HTH DNA binding protein DNA, RNA and nucleotide metabolism -1 30971 31399
YP_006382979.1 NC_017973_p58 hypothetical protein phrog_360 DNA primase DNA, RNA and nucleotide metabolism -1 38450 38842
YP_006382999.1 NC_017973_p78 hypothetical protein phrog_5371 unknown function unknown function -1 45846 46064
YP_006383009.1 NC_017973_p88 hypothetical protein phrog_1946 unknown function unknown function -1 48909 49109
YP_006382964.1 NC_017973_p43 hypothetical protein phrog_2094 unknown function unknown function -1 30633 30971
YP_006382922.1 NC_017973_p1 hypothetical protein phrog_940 nuclease DNA, RNA and nucleotide metabolism 1 472 1092
YP_006382966.1 NC_017973_p45 hypothetical protein phrog_690 unknown function unknown function -1 31396 31605
YP_006382947.1 NC_017973_p26 hypothetical protein phrog_352 minor tail protein tail 1 21154 21546
YP_006382957.1 NC_017973_p36 hypothetical protein phrog_383 unknown function unknown function -1 27258 27650
YP_006383008.1 NC_017973_p87 hypothetical protein phrog_9458 unknown function unknown function -1 48694 48912
YP_006382939.1 NC_017973_p18 hypothetical protein phrog_321 tail completion or Neck1 protein connector 1 13450 13785
YP_006382927.1 NC_017973_p6 minor tail subunit phrog_1260 minor tail protein tail 1 3202 4143
YP_006382995.1 NC_017973_p74 hypothetical protein singleton unknown function unknown function -1 44511 44597
YP_006383002.1 NC_017973_p81 hypothetical protein phrog_421 unknown function unknown function -1 46470 47228
YP_006383011.1 NC_017973_p90 hypothetical protein phrog_3207 unknown function unknown function -1 49396 49662
YP_006382986.1 NC_017973_p65 hypothetical protein phrog_397 unknown function unknown function -1 40228 40491
YP_006383005.1 NC_017973_p84 hypothetical protein phrog_2223 unknown function unknown function -1 47650 47928
YP_006382993.1 NC_017973_p72 hypothetical protein phrog_69 exonuclease DNA, RNA and nucleotide metabolism -1 43150 44022
YP_006382942.1 NC_017973_p21 hypothetical protein phrog_330 tail assembly chaperone tail 1 14942 15340
YP_006382949.1 NC_017973_p28 hypothetical protein phrog_737 minor tail protein tail 1 21845 23491
YP_006382967.1 NC_017973_p46 flavin-dependentthymidylate synthase phrog_85 thymidylate synthase DNA, RNA and nucleotide metabolism -1 31617 32342
YP_006382934.1 NC_017973_p13 scaffold protein phrog_233 head scaffolding protein head and packaging 1 10767 11291
YP_006383007.1 NC_017973_p86 hypothetical protein phrog_586 unknown function unknown function -1 48317 48697
YP_006382953.1 NC_017973_p32 hypothetical protein singleton unknown function unknown function 1 26345 26506
YP_006382996.1 NC_017973_p75 hypothetical protein phrog_357 transcriptional repressor transcription regulation -1 44628 45074
YP_006382981.1 NC_017973_p60 endonuclease phrog_307 endonuclease VII DNA, RNA and nucleotide metabolism -1 38974 39432
YP_006382991.1 NC_017973_p70 hypothetical protein singleton unknown function unknown function -1 42521 42685
YP_006382980.1 NC_017973_p59 hypothetical protein phrog_10918 unknown function unknown function -1 38839 38955
YP_006382973.1 NC_017973_p52 hypothetical protein phrog_2436 unknown function unknown function -1 36116 36268
YP_006382930.1 NC_017973_p9 lysinB phrog_102 endolysin lysis 1 5841 6605
YP_006382950.1 NC_017973_p29 hypothetical protein phrog_356 minor tail protein tail 1 23491 24153
YP_006382937.1 NC_017973_p16 hypothetical protein phrog_137 head-tail adaptor Ad1 connector 1 12514 12891
YP_006382963.1 NC_017973_p42 LacI family transcriptional regulator phrog_13814 transcriptional regulator transcription regulation -1 30427 30636
YP_006382931.1 NC_017973_p10 terminase phrog_9 terminase large subunit head and packaging 1 6619 8400
YP_006382959.1 NC_017973_p38 hypothetical protein phrog_3283 unknown function unknown function -1 27925 28152
YP_006382977.1 NC_017973_p56 leishmanolysin-like peptidase phrog_18377 unknown function unknown function -1 37772 37987
YP_006383015.1 NC_017973_p94 hypothetical protein phrog_1676 unknown function unknown function -1 50965 51261
YP_006383006.1 NC_017973_p85 hypothetical protein phrog_3256 unknown function unknown function -1 47960 48280
YP_006383012.1 NC_017973_p91 hypothetical protein phrog_519 unknown function unknown function -1 49672 49845
YP_006382958.1 NC_017973_p37 hypothetical protein phrog_2099 unknown function unknown function -1 27647 27904
YP_006382952.1 NC_017973_p31 hypothetical protein phrog_733 excisionase integration and excision 1 25732 26187
YP_006382954.1 NC_017973_p33 excisionase phrog_66 excisionase and transcriptional regulator integration and excision -1 26572 26742
YP_006382938.1 NC_017973_p17 hypothetical protein phrog_320 head closure Hc1 connector 1 13082 13450
YP_006382925.1 NC_017973_p4 hypothetical protein phrog_333 HNH endonuclease DNA, RNA and nucleotide metabolism 1 2325 2621
YP_006382933.1 NC_017973_p12 hypothetical protein phrog_193 head maturation protease head and packaging 1 9977 10714
YP_006382974.1 NC_017973_p53 hypothetical protein phrog_221 metallo-phosphoesterase other -1 36272 37039
YP_006382983.1 NC_017973_p62 hypothetical protein phrog_1498 unknown function unknown function -1 39559 39702
YP_006382956.1 NC_017973_p35 hypothetical protein phrog_542 unknown function unknown function -1 27106 27261
YP_006382945.1 NC_017973_p24 minor tail subunit phrog_106 minor tail protein tail 1 18288 19298
YP_006382948.1 NC_017973_p27 hypothetical protein phrog_404 minor tail protein tail 1 21543 21848
YP_006382955.1 NC_017973_p34 hypothetical protein phrog_229 MazG-like pyrophosphatase other -1 26762 27106
YP_006382951.1 NC_017973_p30 integrase phrog_1 integrase integration and excision -1 24209 25243
YP_006382961.1 NC_017973_p40 hypothetical protein phrog_25458 unknown function unknown function -1 28379 28621
YP_006382984.1 NC_017973_p63 hypothetical protein phrog_289 GTP-binding domain other -1 39699 40067
YP_006382998.1 NC_017973_p77 hypothetical protein phrog_14127 unknown function unknown function -1 45544 45801
YP_006382988.1 NC_017973_p67 DnaB helicase phrog_243 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism -1 40967 41773
YP_006383003.1 NC_017973_p82 hypothetical protein phrog_855 unknown function unknown function -1 47231 47359
YP_006382982.1 NC_017973_p61 hypothetical protein phrog_2187 unknown function unknown function -1 39419 39562
YP_006382989.1 NC_017973_p68 hypothetical protein phrog_547 phosphoesterase other -1 41760 42383
YP_006382971.1 NC_017973_p50 hypothetical protein phrog_499 unknown function unknown function -1 35246 35431
YP_006382968.1 NC_017973_p47 class II ribonucleotidereductase phrog_364 ribonucleoside reductase class II DNA, RNA and nucleotide metabolism -1 32461 33000
YP_006383004.1 NC_017973_p83 hypothetical protein phrog_828 unknown function unknown function -1 47379 47582
YP_006382932.1 NC_017973_p11 portal protein phrog_104 portal protein head and packaging 1 8397 9857
YP_006382940.1 NC_017973_p19 hypothetical protein phrog_123 tail terminator connector 1 13795 14214
YP_006382960.1 NC_017973_p39 hypothetical protein phrog_896 unknown function unknown function -1 28152 28379
YP_006382994.1 NC_017973_p73 hypothetical protein phrog_1562 unknown function unknown function -1 44019 44456
YP_006382944.1 NC_017973_p23 minor tail subunit phrog_305 tail length tape measure protein tail 1 15749 18262
YP_006382978.1 NC_017973_p57 hypothetical protein phrog_47 DNA primase DNA, RNA and nucleotide metabolism -1 37990 38625
YP_006383001.1 NC_017973_p80 hypothetical protein phrog_439 site-specific recombination directionality factor RDF integration and excision -1 46195 46470
YP_006382975.1 NC_017973_p54 hypothetical protein phrog_1167 phosphofructokinase other -1 37036 37506
YP_006382936.1 NC_017973_p15 hypothetical protein phrog_748 head-tail connector protein connector 1 12337 12510
YP_006382969.1 NC_017973_p48 hypothetical protein phrog_367 ribonucleotide reductase DNA, RNA and nucleotide metabolism -1 32997 35045
YP_006382929.1 NC_017973_p8 holin phrog_526 holin lysis 1 5449 5844
YP_006383013.1 NC_017973_p92 hypothetical protein phrog_1392 unknown function unknown function -1 49842 50561
YP_006382962.1 NC_017973_p41 DNA polymerase phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism -1 28632 30419
YP_006382997.1 NC_017973_p76 hypothetical protein phrog_2869 unknown function unknown function -1 45360 45536
YP_006382992.1 NC_017973_p71 hypothetical protein phrog_642 unknown function unknown function -1 42837 43142
YP_006382985.1 NC_017973_p64 hypothetical protein phrog_3369 unknown function unknown function -1 40076 40231
YP_006382926.1 NC_017973_p5 hypothetical protein phrog_226 minor tail protein tail 1 2658 3125
YP_006383010.1 NC_017973_p89 hypothetical protein phrog_20451 unknown function unknown function -1 49117 49383