| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_017973 |
Definition |
Mycobacterium phage SWU1, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Fromanvirus. |
DB of origin |
REFSEQ |
Length |
52474 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
94 |
%GC |
62.4 |
Number of singletons |
3 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_006382943.1 | NC_017973_p22 | hypothetical protein | phrog_3656 | tail assembly chaperone | tail | 1 | 15454 | 15759 |
| YP_006382935.1 | NC_017973_p14 | major head subunit | phrog_10 | major head protein | head and packaging | 1 | 11321 | 12286 |
| YP_006382987.1 | NC_017973_p66 | hypothetical protein | phrog_478 | site-specific recombination directionality factor RDF | integration and excision | -1 | 40549 | 40935 |
| YP_006382976.1 | NC_017973_p55 | hypothetical protein | phrog_22 | thioredoxin domain | DNA, RNA and nucleotide metabolism | -1 | 37503 | 37775 |
| YP_006382941.1 | NC_017973_p20 | major tail subunit | phrog_117 | major tail protein | tail | 1 | 14232 | 14828 |
| YP_006383000.1 | NC_017973_p79 | hypothetical protein | phrog_1477 | unknown function | unknown function | -1 | 46064 | 46195 |
| YP_006382924.1 | NC_017973_p3 | hypothetical protein | phrog_8551 | unknown function | unknown function | 1 | 2077 | 2328 |
| YP_006382970.1 | NC_017973_p49 | hypothetical protein | phrog_2046 | unknown function | unknown function | -1 | 35046 | 35249 |
| YP_006382923.1 | NC_017973_p2 | hypothetical protein | phrog_8314 | unknown function | unknown function | 1 | 1298 | 2077 |
| YP_006382928.1 | NC_017973_p7 | lysinA | phrog_317 | endolysin | lysis | 1 | 4574 | 5452 |
| YP_006382972.1 | NC_017973_p51 | hypothetical protein | phrog_354 | sigma-K factor | transcription regulation | -1 | 35415 | 36119 |
| YP_006383014.1 | NC_017973_p93 | hypothetical protein | phrog_19104 | unknown function | unknown function | -1 | 50660 | 50824 |
| YP_006382946.1 | NC_017973_p25 | minor tail subunit | phrog_110 | minor tail protein | tail | 1 | 19271 | 21085 |
| YP_006382990.1 | NC_017973_p69 | hypothetical protein | phrog_2731 | unknown function | unknown function | -1 | 42393 | 42524 |
| YP_006382965.1 | NC_017973_p44 | DNA binding protein | phrog_517 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 30971 | 31399 |
| YP_006382979.1 | NC_017973_p58 | hypothetical protein | phrog_360 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 38450 | 38842 |
| YP_006382999.1 | NC_017973_p78 | hypothetical protein | phrog_5371 | unknown function | unknown function | -1 | 45846 | 46064 |
| YP_006383009.1 | NC_017973_p88 | hypothetical protein | phrog_1946 | unknown function | unknown function | -1 | 48909 | 49109 |
| YP_006382964.1 | NC_017973_p43 | hypothetical protein | phrog_2094 | unknown function | unknown function | -1 | 30633 | 30971 |
| YP_006382922.1 | NC_017973_p1 | hypothetical protein | phrog_940 | nuclease | DNA, RNA and nucleotide metabolism | 1 | 472 | 1092 |
| YP_006382966.1 | NC_017973_p45 | hypothetical protein | phrog_690 | unknown function | unknown function | -1 | 31396 | 31605 |
| YP_006382947.1 | NC_017973_p26 | hypothetical protein | phrog_352 | minor tail protein | tail | 1 | 21154 | 21546 |
| YP_006382957.1 | NC_017973_p36 | hypothetical protein | phrog_383 | unknown function | unknown function | -1 | 27258 | 27650 |
| YP_006383008.1 | NC_017973_p87 | hypothetical protein | phrog_9458 | unknown function | unknown function | -1 | 48694 | 48912 |
| YP_006382939.1 | NC_017973_p18 | hypothetical protein | phrog_321 | tail completion or Neck1 protein | connector | 1 | 13450 | 13785 |
| YP_006382927.1 | NC_017973_p6 | minor tail subunit | phrog_1260 | minor tail protein | tail | 1 | 3202 | 4143 |
| YP_006382995.1 | NC_017973_p74 | hypothetical protein | singleton | unknown function | unknown function | -1 | 44511 | 44597 |
| YP_006383002.1 | NC_017973_p81 | hypothetical protein | phrog_421 | unknown function | unknown function | -1 | 46470 | 47228 |
| YP_006383011.1 | NC_017973_p90 | hypothetical protein | phrog_3207 | unknown function | unknown function | -1 | 49396 | 49662 |
| YP_006382986.1 | NC_017973_p65 | hypothetical protein | phrog_397 | unknown function | unknown function | -1 | 40228 | 40491 |
| YP_006383005.1 | NC_017973_p84 | hypothetical protein | phrog_2223 | unknown function | unknown function | -1 | 47650 | 47928 |
| YP_006382993.1 | NC_017973_p72 | hypothetical protein | phrog_69 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 43150 | 44022 |
| YP_006382942.1 | NC_017973_p21 | hypothetical protein | phrog_330 | tail assembly chaperone | tail | 1 | 14942 | 15340 |
| YP_006382949.1 | NC_017973_p28 | hypothetical protein | phrog_737 | minor tail protein | tail | 1 | 21845 | 23491 |
| YP_006382967.1 | NC_017973_p46 | flavin-dependentthymidylate synthase | phrog_85 | thymidylate synthase | DNA, RNA and nucleotide metabolism | -1 | 31617 | 32342 |
| YP_006382934.1 | NC_017973_p13 | scaffold protein | phrog_233 | head scaffolding protein | head and packaging | 1 | 10767 | 11291 |
| YP_006383007.1 | NC_017973_p86 | hypothetical protein | phrog_586 | unknown function | unknown function | -1 | 48317 | 48697 |
| YP_006382953.1 | NC_017973_p32 | hypothetical protein | singleton | unknown function | unknown function | 1 | 26345 | 26506 |
| YP_006382996.1 | NC_017973_p75 | hypothetical protein | phrog_357 | transcriptional repressor | transcription regulation | -1 | 44628 | 45074 |
| YP_006382981.1 | NC_017973_p60 | endonuclease | phrog_307 | endonuclease VII | DNA, RNA and nucleotide metabolism | -1 | 38974 | 39432 |
| YP_006382991.1 | NC_017973_p70 | hypothetical protein | singleton | unknown function | unknown function | -1 | 42521 | 42685 |
| YP_006382980.1 | NC_017973_p59 | hypothetical protein | phrog_10918 | unknown function | unknown function | -1 | 38839 | 38955 |
| YP_006382973.1 | NC_017973_p52 | hypothetical protein | phrog_2436 | unknown function | unknown function | -1 | 36116 | 36268 |
| YP_006382930.1 | NC_017973_p9 | lysinB | phrog_102 | endolysin | lysis | 1 | 5841 | 6605 |
| YP_006382950.1 | NC_017973_p29 | hypothetical protein | phrog_356 | minor tail protein | tail | 1 | 23491 | 24153 |
| YP_006382937.1 | NC_017973_p16 | hypothetical protein | phrog_137 | head-tail adaptor Ad1 | connector | 1 | 12514 | 12891 |
| YP_006382963.1 | NC_017973_p42 | LacI family transcriptional regulator | phrog_13814 | transcriptional regulator | transcription regulation | -1 | 30427 | 30636 |
| YP_006382931.1 | NC_017973_p10 | terminase | phrog_9 | terminase large subunit | head and packaging | 1 | 6619 | 8400 |
| YP_006382959.1 | NC_017973_p38 | hypothetical protein | phrog_3283 | unknown function | unknown function | -1 | 27925 | 28152 |
| YP_006382977.1 | NC_017973_p56 | leishmanolysin-like peptidase | phrog_18377 | unknown function | unknown function | -1 | 37772 | 37987 |
| YP_006383015.1 | NC_017973_p94 | hypothetical protein | phrog_1676 | unknown function | unknown function | -1 | 50965 | 51261 |
| YP_006383006.1 | NC_017973_p85 | hypothetical protein | phrog_3256 | unknown function | unknown function | -1 | 47960 | 48280 |
| YP_006383012.1 | NC_017973_p91 | hypothetical protein | phrog_519 | unknown function | unknown function | -1 | 49672 | 49845 |
| YP_006382958.1 | NC_017973_p37 | hypothetical protein | phrog_2099 | unknown function | unknown function | -1 | 27647 | 27904 |
| YP_006382952.1 | NC_017973_p31 | hypothetical protein | phrog_733 | excisionase | integration and excision | 1 | 25732 | 26187 |
| YP_006382954.1 | NC_017973_p33 | excisionase | phrog_66 | excisionase and transcriptional regulator | integration and excision | -1 | 26572 | 26742 |
| YP_006382938.1 | NC_017973_p17 | hypothetical protein | phrog_320 | head closure Hc1 | connector | 1 | 13082 | 13450 |
| YP_006382925.1 | NC_017973_p4 | hypothetical protein | phrog_333 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 2325 | 2621 |
| YP_006382933.1 | NC_017973_p12 | hypothetical protein | phrog_193 | head maturation protease | head and packaging | 1 | 9977 | 10714 |
| YP_006382974.1 | NC_017973_p53 | hypothetical protein | phrog_221 | metallo-phosphoesterase | other | -1 | 36272 | 37039 |
| YP_006382983.1 | NC_017973_p62 | hypothetical protein | phrog_1498 | unknown function | unknown function | -1 | 39559 | 39702 |
| YP_006382956.1 | NC_017973_p35 | hypothetical protein | phrog_542 | unknown function | unknown function | -1 | 27106 | 27261 |
| YP_006382945.1 | NC_017973_p24 | minor tail subunit | phrog_106 | minor tail protein | tail | 1 | 18288 | 19298 |
| YP_006382948.1 | NC_017973_p27 | hypothetical protein | phrog_404 | minor tail protein | tail | 1 | 21543 | 21848 |
| YP_006382955.1 | NC_017973_p34 | hypothetical protein | phrog_229 | MazG-like pyrophosphatase | other | -1 | 26762 | 27106 |
| YP_006382951.1 | NC_017973_p30 | integrase | phrog_1 | integrase | integration and excision | -1 | 24209 | 25243 |
| YP_006382961.1 | NC_017973_p40 | hypothetical protein | phrog_25458 | unknown function | unknown function | -1 | 28379 | 28621 |
| YP_006382984.1 | NC_017973_p63 | hypothetical protein | phrog_289 | GTP-binding domain | other | -1 | 39699 | 40067 |
| YP_006382998.1 | NC_017973_p77 | hypothetical protein | phrog_14127 | unknown function | unknown function | -1 | 45544 | 45801 |
| YP_006382988.1 | NC_017973_p67 | DnaB helicase | phrog_243 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | -1 | 40967 | 41773 |
| YP_006383003.1 | NC_017973_p82 | hypothetical protein | phrog_855 | unknown function | unknown function | -1 | 47231 | 47359 |
| YP_006382982.1 | NC_017973_p61 | hypothetical protein | phrog_2187 | unknown function | unknown function | -1 | 39419 | 39562 |
| YP_006382989.1 | NC_017973_p68 | hypothetical protein | phrog_547 | phosphoesterase | other | -1 | 41760 | 42383 |
| YP_006382971.1 | NC_017973_p50 | hypothetical protein | phrog_499 | unknown function | unknown function | -1 | 35246 | 35431 |
| YP_006382968.1 | NC_017973_p47 | class II ribonucleotidereductase | phrog_364 | ribonucleoside reductase class II | DNA, RNA and nucleotide metabolism | -1 | 32461 | 33000 |
| YP_006383004.1 | NC_017973_p83 | hypothetical protein | phrog_828 | unknown function | unknown function | -1 | 47379 | 47582 |
| YP_006382932.1 | NC_017973_p11 | portal protein | phrog_104 | portal protein | head and packaging | 1 | 8397 | 9857 |
| YP_006382940.1 | NC_017973_p19 | hypothetical protein | phrog_123 | tail terminator | connector | 1 | 13795 | 14214 |
| YP_006382960.1 | NC_017973_p39 | hypothetical protein | phrog_896 | unknown function | unknown function | -1 | 28152 | 28379 |
| YP_006382994.1 | NC_017973_p73 | hypothetical protein | phrog_1562 | unknown function | unknown function | -1 | 44019 | 44456 |
| YP_006382944.1 | NC_017973_p23 | minor tail subunit | phrog_305 | tail length tape measure protein | tail | 1 | 15749 | 18262 |
| YP_006382978.1 | NC_017973_p57 | hypothetical protein | phrog_47 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 37990 | 38625 |
| YP_006383001.1 | NC_017973_p80 | hypothetical protein | phrog_439 | site-specific recombination directionality factor RDF | integration and excision | -1 | 46195 | 46470 |
| YP_006382975.1 | NC_017973_p54 | hypothetical protein | phrog_1167 | phosphofructokinase | other | -1 | 37036 | 37506 |
| YP_006382936.1 | NC_017973_p15 | hypothetical protein | phrog_748 | head-tail connector protein | connector | 1 | 12337 | 12510 |
| YP_006382969.1 | NC_017973_p48 | hypothetical protein | phrog_367 | ribonucleotide reductase | DNA, RNA and nucleotide metabolism | -1 | 32997 | 35045 |
| YP_006382929.1 | NC_017973_p8 | holin | phrog_526 | holin | lysis | 1 | 5449 | 5844 |
| YP_006383013.1 | NC_017973_p92 | hypothetical protein | phrog_1392 | unknown function | unknown function | -1 | 49842 | 50561 |
| YP_006382962.1 | NC_017973_p41 | DNA polymerase | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 28632 | 30419 |
| YP_006382997.1 | NC_017973_p76 | hypothetical protein | phrog_2869 | unknown function | unknown function | -1 | 45360 | 45536 |
| YP_006382992.1 | NC_017973_p71 | hypothetical protein | phrog_642 | unknown function | unknown function | -1 | 42837 | 43142 |
| YP_006382985.1 | NC_017973_p64 | hypothetical protein | phrog_3369 | unknown function | unknown function | -1 | 40076 | 40231 |
| YP_006382926.1 | NC_017973_p5 | hypothetical protein | phrog_226 | minor tail protein | tail | 1 | 2658 | 3125 |
| YP_006383010.1 | NC_017973_p89 | hypothetical protein | phrog_20451 | unknown function | unknown function | -1 | 49117 | 49383 |