| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_017978 |
Definition |
Clostridium phage PhiS63, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae. |
DB of origin |
REFSEQ |
Length |
33609 |
Host Name |
Clostridium perfringens |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
43 |
%GC |
27.47 |
Number of singletons |
9 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_006383505.1 | NC_017978_p1 | terminase small subunit | phrog_83 | terminase small subunit | head and packaging | 1 | 88 | 465 |
| YP_006383535.1 | NC_017978_p31 | hypothetical protein | phrog_3584 | replication initiation protein | DNA, RNA and nucleotide metabolism | 1 | 27618 | 28358 |
| YP_006383519.1 | NC_017978_p15 | structural protein, endopeptidase family | phrog_1067 | minor head protein | head and packaging | 1 | 12154 | 15216 |
| YP_006383517.1 | NC_017978_p13 | tail measure protein | phrog_58 | tail length tape measure protein | tail | 1 | 8192 | 11446 |
| YP_006383508.1 | NC_017978_p4 | portal protein | phrog_12 | portal protein | head and packaging | 1 | 2336 | 3544 |
| YP_006383530.1 | NC_017978_p26 | DNA-binding protein | phrog_8 | transcriptional regulator | transcription regulation | -1 | 25426 | 25788 |
| YP_006383537.1 | NC_017978_p33 | transcription regulator | phrog_10086 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 28657 | 28935 |
| YP_006383533.1 | NC_017978_p29 | hypothetical protein | singleton | unknown function | unknown function | 1 | 26807 | 27007 |
| YP_006383539.1 | NC_017978_p35 | hypothetical protein | phrog_31923 | unknown function | unknown function | 1 | 29082 | 30053 |
| YP_006383509.1 | NC_017978_p5 | prohead protease | phrog_80 | head maturation protease | head and packaging | 1 | 3537 | 4190 |
| YP_006383507.1 | NC_017978_p3 | hypothetical protein | singleton | unknown function | unknown function | 1 | 2131 | 2328 |
| YP_006383506.1 | NC_017978_p2 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 462 | 2141 |
| YP_006383532.1 | NC_017978_p28 | RNA polymerase | phrog_7199 | RNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 26609 | 26797 |
| YP_006383512.1 | NC_017978_p8 | head-tail adaptor | phrog_25 | head closure Hc1 | connector | 1 | 5574 | 5909 |
| YP_006383515.1 | NC_017978_p11 | major tail protein | phrog_88 | major tail protein | tail | 1 | 6719 | 7321 |
| YP_006383538.1 | NC_017978_p34 | hypothetical protein | phrog_4188 | unknown function | unknown function | 1 | 28946 | 29122 |
| YP_006383542.1 | NC_017978_p38 | hypothetical protein | phrog_23822 | unknown function | unknown function | 1 | 30824 | 31150 |
| YP_006383531.1 | NC_017978_p27 | DNA-binding protein | singleton | transcriptional repressor | transcription regulation | 1 | 25957 | 26259 |
| YP_006383544.1 | NC_017978_p40 | sigma factor | phrog_1558 | unknown function | unknown function | 1 | 31509 | 32009 |
| YP_006383521.1 | NC_017978_p17 | hypothetical protein | phrog_6782 | tail fiber protein | tail | 1 | 17184 | 19823 |
| YP_006383529.1 | NC_017978_p25 | transcription factor | singleton | transcriptional repressor | transcription regulation | -1 | 24850 | 25110 |
| YP_006383541.1 | NC_017978_p37 | hypothetical protein | singleton | unknown function | unknown function | 1 | 30510 | 30827 |
| YP_006383511.1 | NC_017978_p7 | HK97and SPP1 gp15-like protein | phrog_40 | head-tail adaptor Ad1 | connector | 1 | 5297 | 5581 |
| YP_006383540.1 | NC_017978_p36 | repressor | phrog_8 | transcriptional regulator | transcription regulation | 1 | 30103 | 30513 |
| YP_006383524.1 | NC_017978_p20 | holin | phrog_9492 | unknown function | unknown function | 1 | 20376 | 20858 |
| YP_006383527.1 | NC_017978_p23 | beta-lactamase-like protein | phrog_18826 | unknown function | unknown function | 1 | 22656 | 23102 |
| YP_006383522.1 | NC_017978_p18 | hypothetical protein | phrog_2310 | unknown function | unknown function | 1 | 19842 | 20039 |
| YP_006383536.1 | NC_017978_p32 | hypothetical protein | singleton | unknown function | unknown function | 1 | 28361 | 28579 |
| YP_006383510.1 | NC_017978_p6 | capsid protein | phrog_10 | major head protein | head and packaging | 1 | 4192 | 5277 |
| YP_006383514.1 | NC_017978_p10 | hypothetical protein | phrog_78 | tail terminator | connector | 1 | 6355 | 6702 |
| YP_006383546.1 | NC_017978_p42 | hypothetical protein | singleton | unknown function | unknown function | 1 | 32912 | 33070 |
| YP_006383547.1 | NC_017978_p43 | HNH endonuclease-like protein | phrog_144 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 33099 | 33560 |
| YP_006383528.1 | NC_017978_p24 | integrase/recombinase | phrog_95 | integrase | integration and excision | -1 | 23252 | 24760 |
| YP_006383526.1 | NC_017978_p22 | hypothetical protein | singleton | unknown function | unknown function | 1 | 22279 | 22644 |
| YP_006383534.1 | NC_017978_p30 | HNH endonuclease | phrog_3497 | unknown function | unknown function | 1 | 26994 | 27389 |
| YP_006383523.1 | NC_017978_p19 | immuneglobulin-binding protein/adhesion-like protein | phrog_1193 | hemolysin | other | 1 | 20122 | 20355 |
| YP_006383520.1 | NC_017978_p16 | metallo-beta-lactamase family protein | phrog_27548 | unknown function | unknown function | 1 | 15267 | 17168 |
| YP_006383545.1 | NC_017978_p41 | hypothetical protein | singleton | unknown function | unknown function | 1 | 32303 | 32479 |
| YP_006383518.1 | NC_017978_p14 | phage tail component | phrog_33 | distal tail protein Dit | tail | 1 | 11388 | 12149 |
| YP_006383525.1 | NC_017978_p21 | endolysin | phrog_291 | endolysin | lysis | 1 | 20913 | 21941 |
| YP_006383543.1 | NC_017978_p39 | recombinase/transposase | phrog_3356 | transposase | integration and excision | 1 | 31239 | 31475 |
| YP_006383516.1 | NC_017978_p12 | hypothetical protein | phrog_13494 | unknown function | unknown function | 1 | 7324 | 7641 |
| YP_006383513.1 | NC_017978_p9 | HK97 family protein | phrog_5 | tail completion or Neck1 protein | connector | 1 | 5909 | 6346 |