Genomic map of Clostridium phage PhiS63 (NC_017978)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_017978
Definition
Clostridium phage PhiS63, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae.
DB of origin
REFSEQ
Length
33609
Host Name
Clostridium perfringens
Host domain
Bacteria
Is prophage?
undef
Number of proteins
43
%GC
27.47
Number of singletons
9
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_006383505.1 NC_017978_p1 terminase small subunit phrog_83 terminase small subunit head and packaging 1 88 465
YP_006383535.1 NC_017978_p31 hypothetical protein phrog_3584 replication initiation protein DNA, RNA and nucleotide metabolism 1 27618 28358
YP_006383519.1 NC_017978_p15 structural protein, endopeptidase family phrog_1067 minor head protein head and packaging 1 12154 15216
YP_006383517.1 NC_017978_p13 tail measure protein phrog_58 tail length tape measure protein tail 1 8192 11446
YP_006383508.1 NC_017978_p4 portal protein phrog_12 portal protein head and packaging 1 2336 3544
YP_006383530.1 NC_017978_p26 DNA-binding protein phrog_8 transcriptional regulator transcription regulation -1 25426 25788
YP_006383537.1 NC_017978_p33 transcription regulator phrog_10086 HTH DNA binding protein DNA, RNA and nucleotide metabolism 1 28657 28935
YP_006383533.1 NC_017978_p29 hypothetical protein singleton unknown function unknown function 1 26807 27007
YP_006383539.1 NC_017978_p35 hypothetical protein phrog_31923 unknown function unknown function 1 29082 30053
YP_006383509.1 NC_017978_p5 prohead protease phrog_80 head maturation protease head and packaging 1 3537 4190
YP_006383507.1 NC_017978_p3 hypothetical protein singleton unknown function unknown function 1 2131 2328
YP_006383506.1 NC_017978_p2 terminase large subunit phrog_9 terminase large subunit head and packaging 1 462 2141
YP_006383532.1 NC_017978_p28 RNA polymerase phrog_7199 RNA polymerase DNA, RNA and nucleotide metabolism 1 26609 26797
YP_006383512.1 NC_017978_p8 head-tail adaptor phrog_25 head closure Hc1 connector 1 5574 5909
YP_006383515.1 NC_017978_p11 major tail protein phrog_88 major tail protein tail 1 6719 7321
YP_006383538.1 NC_017978_p34 hypothetical protein phrog_4188 unknown function unknown function 1 28946 29122
YP_006383542.1 NC_017978_p38 hypothetical protein phrog_23822 unknown function unknown function 1 30824 31150
YP_006383531.1 NC_017978_p27 DNA-binding protein singleton transcriptional repressor transcription regulation 1 25957 26259
YP_006383544.1 NC_017978_p40 sigma factor phrog_1558 unknown function unknown function 1 31509 32009
YP_006383521.1 NC_017978_p17 hypothetical protein phrog_6782 tail fiber protein tail 1 17184 19823
YP_006383529.1 NC_017978_p25 transcription factor singleton transcriptional repressor transcription regulation -1 24850 25110
YP_006383541.1 NC_017978_p37 hypothetical protein singleton unknown function unknown function 1 30510 30827
YP_006383511.1 NC_017978_p7 HK97and SPP1 gp15-like protein phrog_40 head-tail adaptor Ad1 connector 1 5297 5581
YP_006383540.1 NC_017978_p36 repressor phrog_8 transcriptional regulator transcription regulation 1 30103 30513
YP_006383524.1 NC_017978_p20 holin phrog_9492 unknown function unknown function 1 20376 20858
YP_006383527.1 NC_017978_p23 beta-lactamase-like protein phrog_18826 unknown function unknown function 1 22656 23102
YP_006383522.1 NC_017978_p18 hypothetical protein phrog_2310 unknown function unknown function 1 19842 20039
YP_006383536.1 NC_017978_p32 hypothetical protein singleton unknown function unknown function 1 28361 28579
YP_006383510.1 NC_017978_p6 capsid protein phrog_10 major head protein head and packaging 1 4192 5277
YP_006383514.1 NC_017978_p10 hypothetical protein phrog_78 tail terminator connector 1 6355 6702
YP_006383546.1 NC_017978_p42 hypothetical protein singleton unknown function unknown function 1 32912 33070
YP_006383547.1 NC_017978_p43 HNH endonuclease-like protein phrog_144 HNH endonuclease DNA, RNA and nucleotide metabolism 1 33099 33560
YP_006383528.1 NC_017978_p24 integrase/recombinase phrog_95 integrase integration and excision -1 23252 24760
YP_006383526.1 NC_017978_p22 hypothetical protein singleton unknown function unknown function 1 22279 22644
YP_006383534.1 NC_017978_p30 HNH endonuclease phrog_3497 unknown function unknown function 1 26994 27389
YP_006383523.1 NC_017978_p19 immuneglobulin-binding protein/adhesion-like protein phrog_1193 hemolysin other 1 20122 20355
YP_006383520.1 NC_017978_p16 metallo-beta-lactamase family protein phrog_27548 unknown function unknown function 1 15267 17168
YP_006383545.1 NC_017978_p41 hypothetical protein singleton unknown function unknown function 1 32303 32479
YP_006383518.1 NC_017978_p14 phage tail component phrog_33 distal tail protein Dit tail 1 11388 12149
YP_006383525.1 NC_017978_p21 endolysin phrog_291 endolysin lysis 1 20913 21941
YP_006383543.1 NC_017978_p39 recombinase/transposase phrog_3356 transposase integration and excision 1 31239 31475
YP_006383516.1 NC_017978_p12 hypothetical protein phrog_13494 unknown function unknown function 1 7324 7641
YP_006383513.1 NC_017978_p9 HK97 family protein phrog_5 tail completion or Neck1 protein connector 1 5909 6346