| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_017980 |
Definition |
Clostridium phage phiCP7R, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae. |
DB of origin |
REFSEQ |
Length |
18397 |
Host Name |
Clostridium perfringens |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
26 |
%GC |
34.81 |
Number of singletons |
4 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_006383607.1 | NC_017980_p26 | hypothetical protein | singleton | unknown function | unknown function | -1 | 17565 | 17807 |
| YP_006383595.1 | NC_017980_p14 | hypothetical protein | phrog_13286 | tail protein | tail | -1 | 9566 | 9835 |
| YP_006383605.1 | NC_017980_p24 | hypothetical protein | phrog_24415 | unknown function | unknown function | -1 | 17009 | 17209 |
| YP_006383582.1 | NC_017980_p1 | hypothetical protein | phrog_33044 | unknown function | unknown function | 1 | 154 | 531 |
| YP_006383592.1 | NC_017980_p11 | N-acetylmuramoyl-L-alanine amidase | phrog_822 | amidase | lysis | -1 | 8173 | 8856 |
| YP_006383591.1 | NC_017980_p10 | pre-neck appendage protein | phrog_17212 | pre-neck appendage protein | connector | -1 | 6232 | 8106 |
| YP_006383590.1 | NC_017980_p9 | DNA encapsidation protein | phrog_2150 | terminase | head and packaging | 1 | 5043 | 6200 |
| YP_006383602.1 | NC_017980_p21 | major head protein | phrog_2006 | major head protein | head and packaging | -1 | 14995 | 16107 |
| YP_006383598.1 | NC_017980_p17 | connector protein | phrog_2038 | upper collar connector | connector | -1 | 10925 | 11830 |
| YP_006383597.1 | NC_017980_p16 | collar protein | phrog_5472 | lower collar | tail | -1 | 10258 | 10947 |
| YP_006383599.1 | NC_017980_p18 | hypothetical protein | phrog_4898 | holin | lysis | -1 | 11823 | 12077 |
| YP_006383586.1 | NC_017980_p5 | hypothetical protein | phrog_1689 | nucleotide kinase | other | 1 | 1393 | 1662 |
| YP_006383606.1 | NC_017980_p25 | hypothetical protein | phrog_27809 | unknown function | unknown function | -1 | 17392 | 17559 |
| YP_006383594.1 | NC_017980_p13 | hypothetical protein | phrog_26303 | unknown function | unknown function | -1 | 9400 | 9552 |
| YP_006383583.1 | NC_017980_p2 | hypothetical protein | singleton | unknown function | unknown function | 1 | 586 | 888 |
| YP_006383588.1 | NC_017980_p7 | hypothetical protein | phrog_27772 | unknown function | unknown function | 1 | 2179 | 2895 |
| YP_006383587.1 | NC_017980_p6 | hypothetical protein | phrog_23266 | unknown function | unknown function | 1 | 1643 | 2101 |
| YP_006383585.1 | NC_017980_p4 | hypothetical protein | singleton | unknown function | unknown function | 1 | 1266 | 1418 |
| YP_006383603.1 | NC_017980_p22 | hypothetical protein | phrog_25250 | unknown function | unknown function | -1 | 16119 | 16415 |
| YP_006383589.1 | NC_017980_p8 | DNA polymerase | phrog_1907 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 2908 | 5091 |
| YP_006383600.1 | NC_017980_p19 | tail protein | phrog_16740 | tail protein | tail | -1 | 12154 | 13353 |
| YP_006383584.1 | NC_017980_p3 | hypothetical protein | singleton | unknown function | unknown function | 1 | 1177 | 1266 |
| YP_006383604.1 | NC_017980_p23 | SpoVG protein | phrog_27338 | unknown function | unknown function | -1 | 16629 | 16940 |
| YP_006383601.1 | NC_017980_p20 | lysozyme-peptidase | phrog_16615 | peptidase | other | -1 | 13356 | 14945 |
| YP_006383593.1 | NC_017980_p12 | hypothetical protein | phrog_23936 | unknown function | unknown function | -1 | 8856 | 9191 |
| YP_006383596.1 | NC_017980_p15 | hypothetical protein | phrog_27689 | unknown function | unknown function | -1 | 9832 | 10122 |