Genomic map of Xanthomonas phage vB_XveM_DIBBI (NC_017981)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_017981
Definition
Xanthomonas phage vB_XveM_DIBBI, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae.
DB of origin
REFSEQ
Length
49981
Host Name
Xanthomonas vesicatoria
Host domain
Bacteria
Is prophage?
undef
Number of proteins
81
%GC
52.4
Number of singletons
37
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_006383669.1 NC_017981_p62 hypothetical protein singleton unknown function unknown function 1 42325 42531
YP_006383665.1 NC_017981_p58 hypothetical protein singleton unknown function unknown function 1 41024 41431
YP_006383658.1 NC_017981_p51 hypothetical protein singleton unknown function unknown function 1 38044 38427
YP_006383634.1 NC_017981_p27 hypothetical protein singleton unknown function unknown function 1 21516 22073
YP_006383611.1 NC_017981_p4 terminase large subunit phrog_38 terminase large subunit head and packaging 1 3324 4916
YP_006383651.1 NC_017981_p44 hypothetical protein singleton unknown function unknown function 1 35017 35337
YP_006383639.1 NC_017981_p32 recombination protein phrog_155 Erf-like ssDNA annealing protein DNA, RNA and nucleotide metabolism -1 26329 26991
YP_006383681.1 NC_017981_p74 hypothetical protein singleton unknown function unknown function 1 46108 46638
YP_006383614.1 NC_017981_p7 major capsid protein phrog_530 head maturation protease head and packaging 1 7073 8242
YP_006383650.1 NC_017981_p43 C-5 cytosine-specific DNA methylase phrog_757 DNA methyltransferase other 1 34202 34945
YP_006383646.1 NC_017981_p39 deoxyuridine 5'-triphosphate nucleotidohydrolase phrog_135 dUTPase DNA, RNA and nucleotide metabolism 1 32131 32628
YP_006383636.1 NC_017981_p29 tail fiber protein/putative EPS depolymerase phrog_4250 EPS depolymerase tail 1 22965 25523
YP_006383645.1 NC_017981_p38 hypothetical protein singleton unknown function unknown function 1 31774 32055
YP_006383610.1 NC_017981_p3 terminase small subunit phrog_606 terminase small subunit head and packaging 1 2797 3324
YP_006383678.1 NC_017981_p71 hypothetical protein singleton unknown function unknown function 1 45206 45502
YP_006383616.1 NC_017981_p9 hypothetical protein phrog_264 major head protein head and packaging 1 8821 9756
YP_006383617.1 NC_017981_p10 hypothetical protein singleton unknown function unknown function 1 9823 10053
YP_006383625.1 NC_017981_p18 hypothetical protein phrog_1613 tail assembly chaperone tail 1 14021 14509
YP_006383661.1 NC_017981_p54 hypothetical protein singleton unknown function unknown function 1 39196 39456
YP_006383649.1 NC_017981_p42 hypothetical protein phrog_2676 unknown function unknown function 1 33967 34212
YP_006383626.1 NC_017981_p19 tail tape measure protein phrog_3981 tail length tape measure protein tail 1 14619 16322
YP_006383641.1 NC_017981_p34 hypothetical protein phrog_824 unknown function unknown function -1 27965 28375
YP_006383648.1 NC_017981_p41 hypothetical protein singleton unknown function unknown function 1 33393 33959
YP_006383660.1 NC_017981_p53 hypothetical protein singleton unknown function unknown function 1 38627 39136
YP_006383664.1 NC_017981_p57 hypothetical protein singleton unknown function unknown function 1 40341 40610
YP_006383657.1 NC_017981_p50 hypothetical protein singleton unknown function unknown function 1 37838 38047
YP_006383685.1 NC_017981_p78 lysin phrog_90 endolysin lysis 1 47826 48311
YP_006383638.1 NC_017981_p31 single-stranded DNA-binding protein phrog_44 single strand DNA binding protein DNA, RNA and nucleotide metabolism -1 25755 26282
YP_006383687.1 NC_017981_p80 hypothetical protein singleton unknown function unknown function 1 48827 48901
YP_006383662.1 NC_017981_p55 hypothetical protein singleton unknown function unknown function 1 39577 39972
YP_006383627.1 NC_017981_p20 hypothetical protein phrog_817 tail fiber protein tail 1 16322 17047
YP_006383643.1 NC_017981_p36 hypothetical protein singleton unknown function unknown function 1 30604 30831
YP_006383620.1 NC_017981_p13 hypothetical protein phrog_222 tail completion or Neck1 protein connector 1 10630 11136
YP_006383667.1 NC_017981_p60 hypothetical protein singleton unknown function unknown function 1 41857 42204
YP_006383609.1 NC_017981_p2 hypothetical protein phrog_10239 unknown function unknown function 1 2402 2524
YP_006383676.1 NC_017981_p69 hypothetical protein singleton unknown function unknown function 1 44748 44978
YP_006383684.1 NC_017981_p77 holin phrog_6384 holin lysis 1 47500 47829
YP_006383619.1 NC_017981_p12 hypothetical protein phrog_302 virion structural protein head and packaging 1 10211 10630
YP_006383679.1 NC_017981_p72 hypothetical protein singleton unknown function unknown function 1 45499 45708
YP_006383653.1 NC_017981_p46 hypothetical protein singleton unknown function unknown function 1 35600 36382
YP_006383644.1 NC_017981_p37 DNA primase phrog_510 DNA primase DNA, RNA and nucleotide metabolism 1 30828 31781
YP_006383675.1 NC_017981_p68 hypothetical protein singleton unknown function unknown function 1 44485 44751
YP_006383680.1 NC_017981_p73 hypothetical protein singleton unknown function unknown function 1 45765 46064
YP_006383629.1 NC_017981_p22 hypothetical protein phrog_196 baseplate hub tail 1 17360 18289
YP_006383615.1 NC_017981_p8 hypothetical protein phrog_1989 unknown function unknown function 1 8242 8763
YP_006383659.1 NC_017981_p52 hypothetical protein singleton unknown function unknown function 1 38427 38630
YP_006383630.1 NC_017981_p23 baseplate assembly protein phrog_11 baseplate spike tail 1 18289 18963
YP_006383624.1 NC_017981_p17 hypothetical protein phrog_280 virion structural protein head and packaging 1 13488 13937
YP_006383677.1 NC_017981_p70 hypothetical protein singleton unknown function unknown function 1 44975 45193
YP_006383613.1 NC_017981_p6 head morphogenesis protein phrog_324 head morphogenesis head and packaging 1 6225 7037
YP_006383670.1 NC_017981_p63 hypothetical protein singleton unknown function unknown function 1 42540 42758
YP_006383656.1 NC_017981_p49 hypothetical protein phrog_7319 unknown function unknown function 1 37678 37836
YP_006383686.1 NC_017981_p79 hypothetical protein phrog_214 Rz-like spanin lysis 1 48298 48729
YP_006383663.1 NC_017981_p56 hypothetical protein singleton unknown function unknown function 1 39969 40298
YP_006383633.1 NC_017981_p26 hypothetical protein phrog_6277 unknown function unknown function 1 20719 21516
YP_006383621.1 NC_017981_p14 hypothetical protein phrog_939 head protein head and packaging 1 11136 11594
YP_006383637.1 NC_017981_p30 regulatory protein phrog_3 transcriptional repressor transcription regulation -1 25552 25740
YP_006383635.1 NC_017981_p28 tail fiber protein phrog_5717 tail protein tail 1 22073 22915
YP_006383632.1 NC_017981_p25 baseplate component phrog_6 baseplate wedge subunit tail 1 19311 20726
YP_006383647.1 NC_017981_p40 N-6-adenine-methyltransferase phrog_111 DNA methyltransferase other 1 32628 33341
YP_006383655.1 NC_017981_p48 hypothetical protein singleton unknown function unknown function 1 36831 37634
YP_006383618.1 NC_017981_p11 hypothetical protein phrog_17409 unknown function unknown function 1 10053 10208
YP_006383673.1 NC_017981_p66 hypothetical protein singleton unknown function unknown function 1 43659 43901
YP_006383623.1 NC_017981_p16 hypothetical protein phrog_205 tail sheath tail 1 12142 13485
YP_006383608.1 NC_017981_p1 DNA primase singleton unknown function unknown function 1 27 887
YP_006383683.1 NC_017981_p76 hypothetical protein phrog_323 transcriptional regulator, D5-like transcription regulation 1 47099 47449
YP_006383642.1 NC_017981_p35 ATP-dependent helicase phrog_16 DNA helicase DNA, RNA and nucleotide metabolism -1 28372 30456
YP_006383682.1 NC_017981_p75 hypothetical protein phrog_323 transcriptional regulator, D5-like transcription regulation 1 46807 47112
YP_006383668.1 NC_017981_p61 hypothetical protein singleton unknown function unknown function 1 42182 42322
YP_006383654.1 NC_017981_p47 AraC family transcriptional regulator singleton transcriptional regulator transcription regulation 1 36382 36792
YP_006383640.1 NC_017981_p33 exodeoxyribonuclease VIII phrog_412 exonuclease VIII DNA, RNA and nucleotide metabolism -1 26993 27922
YP_006383652.1 NC_017981_p45 hypothetical protein phrog_2817 unknown function unknown function 1 35337 35603
YP_006383628.1 NC_017981_p21 hypothetical protein phrog_349 virion structural protein head and packaging 1 17044 17370
YP_006383688.1 NC_017981_p81 hypothetical protein singleton unknown function unknown function -1 48994 49320
YP_006383666.1 NC_017981_p59 hypothetical protein singleton unknown function unknown function 1 41474 41857
YP_006383672.1 NC_017981_p65 hypothetical protein singleton unknown function unknown function 1 43040 43675
YP_006383622.1 NC_017981_p15 hypothetical protein phrog_7975 tail terminator connector 1 11587 12132
YP_006383674.1 NC_017981_p67 hypothetical protein singleton unknown function unknown function 1 44021 44440
YP_006383671.1 NC_017981_p64 hypothetical protein singleton unknown function unknown function 1 42746 42964
YP_006383631.1 NC_017981_p24 hypothetical protein phrog_120 baseplate wedge subunit tail 1 18963 19307
YP_006383612.1 NC_017981_p5 portal protein phrog_146 portal protein head and packaging 1 4922 6235