Genomic map of Clostridium phage phiCPV4 (NC_018083)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_018083
Definition
Clostridium phage phiCPV4, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae.
DB of origin
REFSEQ
Length
17972
Host Name
Clostridium perfringens
Host domain
Bacteria
Is prophage?
undef
Number of proteins
28
%GC
34.48
Number of singletons
5
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_006488643.1 NC_018083_p28 hypothetical protein singleton unknown function unknown function -1 17626 17775
YP_006488637.1 NC_018083_p22 hypothetical protein phrog_25250 unknown function unknown function -1 15834 16130
YP_006488629.1 NC_018083_p14 hypothetical protein phrog_13286 tail protein tail -1 9282 9551
YP_006488623.1 NC_018083_p8 DNA encapsidation protein phrog_2150 terminase head and packaging 1 4873 5916
YP_006488634.1 NC_018083_p19 tail protein phrog_16740 tail protein tail -1 11870 13069
YP_006488640.1 NC_018083_p25 hypothetical protein phrog_27809 unknown function unknown function -1 17107 17274
YP_006488628.1 NC_018083_p13 hypothetical protein phrog_26303 unknown function unknown function -1 9116 9268
YP_006488621.1 NC_018083_p6 hypothetical protein phrog_27772 unknown function unknown function 1 1895 2611
YP_006488635.1 NC_018083_p20 lysozyme-peptidase phrog_16615 peptidase other -1 13071 14660
YP_006488616.1 NC_018083_p1 hypothetical protein phrog_26256 unknown function unknown function 1 164 388
YP_006488633.1 NC_018083_p18 hypothetical protein phrog_4898 holin lysis -1 11539 11793
YP_006488619.1 NC_018083_p4 hypothetical protein phrog_4943 unknown function unknown function 1 980 1378
YP_006488630.1 NC_018083_p15 hypothetical protein phrog_27689 unknown function unknown function -1 9548 9838
YP_006488641.1 NC_018083_p26 hypothetical protein singleton unknown function unknown function -1 17249 17446
YP_006488627.1 NC_018083_p12 hypothetical protein singleton unknown function unknown function -1 8923 9063
YP_006488620.1 NC_018083_p5 hypothetical protein phrog_23266 unknown function unknown function 1 1359 1817
YP_006488625.1 NC_018083_p10 N-acetylmuramoyl-L-alanine amidase phrog_822 amidase lysis -1 7889 8572
YP_006488631.1 NC_018083_p16 collar protein phrog_5472 lower collar tail -1 9974 10663
YP_006488636.1 NC_018083_p21 major head protein phrog_2006 major head protein head and packaging -1 14710 15822
YP_006488624.1 NC_018083_p9 pre-neck appendage protein phrog_17212 pre-neck appendage protein connector -1 5948 7822
YP_006488639.1 NC_018083_p24 hypothetical protein phrog_24415 unknown function unknown function -1 16724 16924
YP_006488618.1 NC_018083_p3 hypothetical protein phrog_29994 unknown function unknown function 1 707 889
YP_006488617.1 NC_018083_p2 hypothetical protein singleton unknown function unknown function 1 447 602
YP_006488642.1 NC_018083_p27 hypothetical protein singleton unknown function unknown function -1 17439 17615
YP_006488626.1 NC_018083_p11 hypothetical protein phrog_23936 unknown function unknown function -1 8572 8907
YP_006488632.1 NC_018083_p17 connector protein phrog_2038 upper collar connector connector -1 10641 11546
YP_006488622.1 NC_018083_p7 DNA polymerase phrog_1907 DNA polymerase DNA, RNA and nucleotide metabolism 1 2624 4807
YP_006488638.1 NC_018083_p23 SpoVG protein phrog_27338 unknown function unknown function -1 16344 16655