Genomic map of Salmonella phage vB_SemP_Emek (NC_018275)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_018275
Definition
Salmonella phage vB_SemP_Emek, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae; Lederbergvirus.
DB of origin
REFSEQ
Length
39783
Host Name
Salmonella
Host domain
Bacteria
Is prophage?
undef
Number of proteins
70
%GC
47.65
Number of singletons
2
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_006560577.1 NC_018275_p27 hypothetical protein phrog_66 excisionase and transcriptional regulator integration and excision -1 21403 21666
YP_006560602.1 NC_018275_p52 hypothetical protein phrog_1165 unknown function unknown function 1 33046 33252
YP_006560606.1 NC_018275_p56 NinD phrog_8091 unknown function unknown function 1 34393 34566
YP_006560559.1 NC_018275_p9 structural protein phrog_1219 tail needle protein tail 1 8827 9528
YP_006560563.1 NC_018275_p13 injection protein phrog_770 DNA transfer protein other 1 12071 13981
YP_006560598.1 NC_018275_p48 hypothetical protein phrog_1913 tail protein tail 1 30380 30526
YP_006560581.1 NC_018275_p31 Eaa1 phrog_60 unknown function unknown function -1 23025 23840
YP_006560579.1 NC_018275_p29 hypothetical protein phrog_625 unknown function unknown function -1 22125 22409
YP_006560572.1 NC_018275_p22 hypothetical protein phrog_11805 unknown function unknown function 1 16771 16992
YP_006560611.1 NC_018275_p61 NinH phrog_268 unknown function unknown function 1 35686 35889
YP_006560586.1 NC_018275_p36 Eae phrog_614 unknown function unknown function -1 25162 25539
YP_006560554.1 NC_018275_p4 scaffolding protein phrog_648 head scaffolding protein head and packaging 1 4157 5068
YP_006560551.1 NC_018275_p1 terminase small subunit phrog_606 terminase small subunit head and packaging 1 1 489
YP_006560609.1 NC_018275_p59 NinG phrog_171 NinG/ Rap DNA junction specific endonuclease DNA, RNA and nucleotide metabolism 1 34860 35468
YP_006560588.1 NC_018275_p38 Abc2 phrog_656 abc2 anti-RecBCD moron, auxiliary metabolic gene and host takeover -1 25717 26010
YP_006560560.1 NC_018275_p10 virion stability protein phrog_651 head morphogenesis head and packaging 1 9516 9983
YP_006560608.1 NC_018275_p58 NinF phrog_672 unknown function unknown function 1 34706 34885
YP_006560600.1 NC_018275_p50 DnaB helicase phrog_19 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism 1 31331 32707
YP_006560561.1 NC_018275_p11 injection protein phrog_598 DNA ejection DNA, RNA and nucleotide metabolism 1 9986 10675
YP_006560575.1 NC_018275_p25 integrase phrog_1 integrase integration and excision -1 19965 21134
YP_006560552.1 NC_018275_p2 terminase large subunit phrog_2 terminase large subunit head and packaging 1 467 1966
YP_006560562.1 NC_018275_p12 injection protein phrog_917 released from the phage upon host infection other 1 10686 12071
YP_006560601.1 NC_018275_p51 hypothetical protein phrog_2239 unknown function unknown function 1 32704 32973
YP_006560599.1 NC_018275_p49 DNA replication protein phrog_345 replication initiation O-like DNA, RNA and nucleotide metabolism 1 30519 31334
YP_006560583.1 NC_018275_p33 hypothetical protein phrog_21422 unknown function unknown function -1 24102 24377
YP_006560605.1 NC_018275_p55 NinB phrog_72 NinB/ Orf homologous recombination mediator DNA, RNA and nucleotide metabolism 1 33950 34396
YP_006560564.1 NC_018275_p14 hypothetical protein phrog_2651 unknown function unknown function -1 14006 14395
YP_006560615.1 NC_018275_p65 lysin phrog_7 endolysin lysis 1 37280 37783
YP_006560597.1 NC_018275_p47 C1 protein phrog_191 CII-like transcriptional activator transcription regulation 1 30064 30345
YP_006560587.1 NC_018275_p37 hypothetical protein phrog_1117 unknown function unknown function -1 25536 25706
YP_006560596.1 NC_018275_p46 Cro phrog_409 transcriptional regulator transcription regulation 1 29769 29954
YP_006560595.1 NC_018275_p45 C2 protein phrog_4 transcriptional repressor transcription regulation -1 29038 29688
YP_006560614.1 NC_018275_p64 holin phrog_20 holin lysis 1 37105 37308
YP_006560565.1 NC_018275_p15 hypothetical protein phrog_1281 unknown function unknown function 1 14764 15213
YP_006560557.1 NC_018275_p7 head completion protein phrog_637 head-tail adaptor Ad3 connector 1 6945 7445
YP_006560612.1 NC_018275_p62 NinZ phrog_1402 unknown function unknown function 1 35870 36049
YP_006560613.1 NC_018275_p63 late gene regulator protein phrog_127 anti-termination protein Q-like transcription regulation 1 36046 36669
YP_006560590.1 NC_018275_p40 Erf phrog_1097 Erf-like ssDNA annealing protein DNA, RNA and nucleotide metabolism -1 26341 27048
YP_006560578.1 NC_018275_p28 hypothetical protein phrog_1229 unknown function unknown function -1 21703 22053
YP_006560616.1 NC_018275_p66 hypothetical protein singleton unknown function unknown function 1 37780 37875
YP_006560582.1 NC_018275_p32 hypothetical protein phrog_1714 unknown function unknown function -1 23851 24114
YP_006560607.1 NC_018275_p57 NinE phrog_288 unknown function unknown function 1 34533 34709
YP_006560558.1 NC_018275_p8 structural protein phrog_578 head closure Hc3 connector 1 7438 8823
YP_006560610.1 NC_018275_p60 NinY phrog_3496 unknown function unknown function 1 35465 35689
YP_006560604.1 NC_018275_p54 hypothetical protein phrog_5603 unknown function unknown function 1 33697 33993
YP_006560580.1 NC_018275_p30 Eaa2 phrog_60 unknown function unknown function -1 22402 23028
YP_006560556.1 NC_018275_p6 hypothetical protein phrog_3769 unknown function unknown function 1 6401 6961
YP_006560576.1 NC_018275_p26 hypothetical protein phrog_18701 unknown function unknown function -1 21250 21393
YP_006560618.1 NC_018275_p68 hypothetical protein phrog_129 transcriptional regulator transcription regulation 1 38511 39032
YP_006560569.1 NC_018275_p19 hypothetical protein phrog_32536 unknown function unknown function -1 16044 16277
YP_006560566.1 NC_018275_p16 hypothetical protein phrog_8366 unknown function unknown function 1 15152 15637
YP_006560593.1 NC_018275_p43 C3 protein phrog_550 CIII anti-termination transcription regulation -1 27347 27505
YP_006560573.1 NC_018275_p23 antirepressor phrog_2812 unknown function unknown function 1 17055 17945
YP_006560553.1 NC_018275_p3 portal protein phrog_156 portal protein head and packaging 1 1966 4143
YP_006560594.1 NC_018275_p44 antitermination protein phrog_271 anti-termination protein N-like transcription regulation -1 28382 28684
YP_006560617.1 NC_018275_p67 Rz lysis protein phrog_13 Rz-like spanin lysis 1 37872 38309
YP_006560589.1 NC_018275_p39 Abc1 phrog_323 transcriptional regulator, D5-like transcription regulation -1 26057 26341
YP_006560570.1 NC_018275_p20 transcriptional repressor protein phrog_2685 partition protein ATPase other -1 16280 16522
YP_006560603.1 NC_018275_p53 hypothetical protein phrog_343 unknown function unknown function 1 33431 33694
YP_006560592.1 NC_018275_p42 Kil phrog_2394 Kil protein for bacterial septation inhibition other -1 27178 27366
YP_006560585.1 NC_018275_p35 hypothetical protein phrog_1138 unknown function unknown function -1 24644 25165
YP_006560620.1 NC_018275_p70 hypothetical protein phrog_571 unknown function unknown function 1 39506 39748
YP_006560568.1 NC_018275_p18 hypothetical protein phrog_16466 unknown function unknown function -1 15838 16047
YP_006560571.1 NC_018275_p21 Arc phrog_228 Arc-like repressor transcription regulation 1 16616 16774
YP_006560591.1 NC_018275_p41 Arf phrog_2445 Erf recombination cofactor Arf DNA, RNA and nucleotide metabolism -1 27045 27188
YP_006560567.1 NC_018275_p17 hypothetical protein phrog_7586 unknown function unknown function 1 15678 15863
YP_006560619.1 NC_018275_p69 hypothetical protein singleton unknown function unknown function 1 39228 39389
YP_006560574.1 NC_018275_p24 tailspike protein phrog_8875 tail fiber protein tail 1 18046 19902
YP_006560584.1 NC_018275_p34 hypothetical protein phrog_21024 unknown function unknown function -1 24411 24641
YP_006560555.1 NC_018275_p5 capsid protein phrog_283 major head protein head and packaging 1 5068 6360