| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_018275 |
Definition |
Salmonella phage vB_SemP_Emek, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae; Lederbergvirus. |
DB of origin |
REFSEQ |
Length |
39783 |
Host Name |
Salmonella |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
70 |
%GC |
47.65 |
Number of singletons |
2 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_006560577.1 | NC_018275_p27 | hypothetical protein | phrog_66 | excisionase and transcriptional regulator | integration and excision | -1 | 21403 | 21666 |
| YP_006560602.1 | NC_018275_p52 | hypothetical protein | phrog_1165 | unknown function | unknown function | 1 | 33046 | 33252 |
| YP_006560606.1 | NC_018275_p56 | NinD | phrog_8091 | unknown function | unknown function | 1 | 34393 | 34566 |
| YP_006560559.1 | NC_018275_p9 | structural protein | phrog_1219 | tail needle protein | tail | 1 | 8827 | 9528 |
| YP_006560563.1 | NC_018275_p13 | injection protein | phrog_770 | DNA transfer protein | other | 1 | 12071 | 13981 |
| YP_006560598.1 | NC_018275_p48 | hypothetical protein | phrog_1913 | tail protein | tail | 1 | 30380 | 30526 |
| YP_006560581.1 | NC_018275_p31 | Eaa1 | phrog_60 | unknown function | unknown function | -1 | 23025 | 23840 |
| YP_006560579.1 | NC_018275_p29 | hypothetical protein | phrog_625 | unknown function | unknown function | -1 | 22125 | 22409 |
| YP_006560572.1 | NC_018275_p22 | hypothetical protein | phrog_11805 | unknown function | unknown function | 1 | 16771 | 16992 |
| YP_006560611.1 | NC_018275_p61 | NinH | phrog_268 | unknown function | unknown function | 1 | 35686 | 35889 |
| YP_006560586.1 | NC_018275_p36 | Eae | phrog_614 | unknown function | unknown function | -1 | 25162 | 25539 |
| YP_006560554.1 | NC_018275_p4 | scaffolding protein | phrog_648 | head scaffolding protein | head and packaging | 1 | 4157 | 5068 |
| YP_006560551.1 | NC_018275_p1 | terminase small subunit | phrog_606 | terminase small subunit | head and packaging | 1 | 1 | 489 |
| YP_006560609.1 | NC_018275_p59 | NinG | phrog_171 | NinG/ Rap DNA junction specific endonuclease | DNA, RNA and nucleotide metabolism | 1 | 34860 | 35468 |
| YP_006560588.1 | NC_018275_p38 | Abc2 | phrog_656 | abc2 anti-RecBCD | moron, auxiliary metabolic gene and host takeover | -1 | 25717 | 26010 |
| YP_006560560.1 | NC_018275_p10 | virion stability protein | phrog_651 | head morphogenesis | head and packaging | 1 | 9516 | 9983 |
| YP_006560608.1 | NC_018275_p58 | NinF | phrog_672 | unknown function | unknown function | 1 | 34706 | 34885 |
| YP_006560600.1 | NC_018275_p50 | DnaB helicase | phrog_19 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | 1 | 31331 | 32707 |
| YP_006560561.1 | NC_018275_p11 | injection protein | phrog_598 | DNA ejection | DNA, RNA and nucleotide metabolism | 1 | 9986 | 10675 |
| YP_006560575.1 | NC_018275_p25 | integrase | phrog_1 | integrase | integration and excision | -1 | 19965 | 21134 |
| YP_006560552.1 | NC_018275_p2 | terminase large subunit | phrog_2 | terminase large subunit | head and packaging | 1 | 467 | 1966 |
| YP_006560562.1 | NC_018275_p12 | injection protein | phrog_917 | released from the phage upon host infection | other | 1 | 10686 | 12071 |
| YP_006560601.1 | NC_018275_p51 | hypothetical protein | phrog_2239 | unknown function | unknown function | 1 | 32704 | 32973 |
| YP_006560599.1 | NC_018275_p49 | DNA replication protein | phrog_345 | replication initiation O-like | DNA, RNA and nucleotide metabolism | 1 | 30519 | 31334 |
| YP_006560583.1 | NC_018275_p33 | hypothetical protein | phrog_21422 | unknown function | unknown function | -1 | 24102 | 24377 |
| YP_006560605.1 | NC_018275_p55 | NinB | phrog_72 | NinB/ Orf homologous recombination mediator | DNA, RNA and nucleotide metabolism | 1 | 33950 | 34396 |
| YP_006560564.1 | NC_018275_p14 | hypothetical protein | phrog_2651 | unknown function | unknown function | -1 | 14006 | 14395 |
| YP_006560615.1 | NC_018275_p65 | lysin | phrog_7 | endolysin | lysis | 1 | 37280 | 37783 |
| YP_006560597.1 | NC_018275_p47 | C1 protein | phrog_191 | CII-like transcriptional activator | transcription regulation | 1 | 30064 | 30345 |
| YP_006560587.1 | NC_018275_p37 | hypothetical protein | phrog_1117 | unknown function | unknown function | -1 | 25536 | 25706 |
| YP_006560596.1 | NC_018275_p46 | Cro | phrog_409 | transcriptional regulator | transcription regulation | 1 | 29769 | 29954 |
| YP_006560595.1 | NC_018275_p45 | C2 protein | phrog_4 | transcriptional repressor | transcription regulation | -1 | 29038 | 29688 |
| YP_006560614.1 | NC_018275_p64 | holin | phrog_20 | holin | lysis | 1 | 37105 | 37308 |
| YP_006560565.1 | NC_018275_p15 | hypothetical protein | phrog_1281 | unknown function | unknown function | 1 | 14764 | 15213 |
| YP_006560557.1 | NC_018275_p7 | head completion protein | phrog_637 | head-tail adaptor Ad3 | connector | 1 | 6945 | 7445 |
| YP_006560612.1 | NC_018275_p62 | NinZ | phrog_1402 | unknown function | unknown function | 1 | 35870 | 36049 |
| YP_006560613.1 | NC_018275_p63 | late gene regulator protein | phrog_127 | anti-termination protein Q-like | transcription regulation | 1 | 36046 | 36669 |
| YP_006560590.1 | NC_018275_p40 | Erf | phrog_1097 | Erf-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | -1 | 26341 | 27048 |
| YP_006560578.1 | NC_018275_p28 | hypothetical protein | phrog_1229 | unknown function | unknown function | -1 | 21703 | 22053 |
| YP_006560616.1 | NC_018275_p66 | hypothetical protein | singleton | unknown function | unknown function | 1 | 37780 | 37875 |
| YP_006560582.1 | NC_018275_p32 | hypothetical protein | phrog_1714 | unknown function | unknown function | -1 | 23851 | 24114 |
| YP_006560607.1 | NC_018275_p57 | NinE | phrog_288 | unknown function | unknown function | 1 | 34533 | 34709 |
| YP_006560558.1 | NC_018275_p8 | structural protein | phrog_578 | head closure Hc3 | connector | 1 | 7438 | 8823 |
| YP_006560610.1 | NC_018275_p60 | NinY | phrog_3496 | unknown function | unknown function | 1 | 35465 | 35689 |
| YP_006560604.1 | NC_018275_p54 | hypothetical protein | phrog_5603 | unknown function | unknown function | 1 | 33697 | 33993 |
| YP_006560580.1 | NC_018275_p30 | Eaa2 | phrog_60 | unknown function | unknown function | -1 | 22402 | 23028 |
| YP_006560556.1 | NC_018275_p6 | hypothetical protein | phrog_3769 | unknown function | unknown function | 1 | 6401 | 6961 |
| YP_006560576.1 | NC_018275_p26 | hypothetical protein | phrog_18701 | unknown function | unknown function | -1 | 21250 | 21393 |
| YP_006560618.1 | NC_018275_p68 | hypothetical protein | phrog_129 | transcriptional regulator | transcription regulation | 1 | 38511 | 39032 |
| YP_006560569.1 | NC_018275_p19 | hypothetical protein | phrog_32536 | unknown function | unknown function | -1 | 16044 | 16277 |
| YP_006560566.1 | NC_018275_p16 | hypothetical protein | phrog_8366 | unknown function | unknown function | 1 | 15152 | 15637 |
| YP_006560593.1 | NC_018275_p43 | C3 protein | phrog_550 | CIII anti-termination | transcription regulation | -1 | 27347 | 27505 |
| YP_006560573.1 | NC_018275_p23 | antirepressor | phrog_2812 | unknown function | unknown function | 1 | 17055 | 17945 |
| YP_006560553.1 | NC_018275_p3 | portal protein | phrog_156 | portal protein | head and packaging | 1 | 1966 | 4143 |
| YP_006560594.1 | NC_018275_p44 | antitermination protein | phrog_271 | anti-termination protein N-like | transcription regulation | -1 | 28382 | 28684 |
| YP_006560617.1 | NC_018275_p67 | Rz lysis protein | phrog_13 | Rz-like spanin | lysis | 1 | 37872 | 38309 |
| YP_006560589.1 | NC_018275_p39 | Abc1 | phrog_323 | transcriptional regulator, D5-like | transcription regulation | -1 | 26057 | 26341 |
| YP_006560570.1 | NC_018275_p20 | transcriptional repressor protein | phrog_2685 | partition protein ATPase | other | -1 | 16280 | 16522 |
| YP_006560603.1 | NC_018275_p53 | hypothetical protein | phrog_343 | unknown function | unknown function | 1 | 33431 | 33694 |
| YP_006560592.1 | NC_018275_p42 | Kil | phrog_2394 | Kil protein for bacterial septation inhibition | other | -1 | 27178 | 27366 |
| YP_006560585.1 | NC_018275_p35 | hypothetical protein | phrog_1138 | unknown function | unknown function | -1 | 24644 | 25165 |
| YP_006560620.1 | NC_018275_p70 | hypothetical protein | phrog_571 | unknown function | unknown function | 1 | 39506 | 39748 |
| YP_006560568.1 | NC_018275_p18 | hypothetical protein | phrog_16466 | unknown function | unknown function | -1 | 15838 | 16047 |
| YP_006560571.1 | NC_018275_p21 | Arc | phrog_228 | Arc-like repressor | transcription regulation | 1 | 16616 | 16774 |
| YP_006560591.1 | NC_018275_p41 | Arf | phrog_2445 | Erf recombination cofactor Arf | DNA, RNA and nucleotide metabolism | -1 | 27045 | 27188 |
| YP_006560567.1 | NC_018275_p17 | hypothetical protein | phrog_7586 | unknown function | unknown function | 1 | 15678 | 15863 |
| YP_006560619.1 | NC_018275_p69 | hypothetical protein | singleton | unknown function | unknown function | 1 | 39228 | 39389 |
| YP_006560574.1 | NC_018275_p24 | tailspike protein | phrog_8875 | tail fiber protein | tail | 1 | 18046 | 19902 |
| YP_006560584.1 | NC_018275_p34 | hypothetical protein | phrog_21024 | unknown function | unknown function | -1 | 24411 | 24641 |
| YP_006560555.1 | NC_018275_p5 | capsid protein | phrog_283 | major head protein | head and packaging | 1 | 5068 | 6360 |