| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_018276 |
Definition |
Croceibacter phage P2559S, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae. |
DB of origin |
REFSEQ |
Length |
44988 |
Host Name |
Croceibacter atlanticus |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
68 |
%GC |
41.85 |
Number of singletons |
32 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_006560667.1 | NC_018276_p47 | hypothetical protein | singleton | unknown function | unknown function | 1 | 33183 | 33896 |
| YP_006560687.1 | NC_018276_p67 | S-adenosylmethionine decarboxylase | phrog_27309 | S-adenosylmethionine decarboxylase | other | 1 | 43987 | 44307 |
| YP_006560686.1 | NC_018276_p66 | hypothetical protein | phrog_498 | DNA methyltransferase | other | 1 | 42666 | 44024 |
| YP_006560626.1 | NC_018276_p6 | hypothetical protein | phrog_1499 | unknown function | unknown function | 1 | 3533 | 4909 |
| YP_006560630.1 | NC_018276_p10 | hypothetical protein | singleton | unknown function | unknown function | 1 | 6364 | 6585 |
| YP_006560623.1 | NC_018276_p3 | hypothetical protein | singleton | unknown function | unknown function | 1 | 1749 | 1976 |
| YP_006560636.1 | NC_018276_p16 | hypothetical protein | phrog_17560 | unknown function | unknown function | 1 | 12432 | 12935 |
| YP_006560683.1 | NC_018276_p63 | hypothetical protein | phrog_5845 | unknown function | unknown function | 1 | 40786 | 41400 |
| YP_006560639.1 | NC_018276_p19 | hypothetical protein | singleton | unknown function | unknown function | 1 | 14092 | 14352 |
| YP_006560637.1 | NC_018276_p17 | hypothetical protein | phrog_6195 | tail protein | tail | 1 | 13012 | 13530 |
| YP_006560662.1 | NC_018276_p42 | hypothetical protein | singleton | unknown function | unknown function | 1 | 31161 | 31280 |
| YP_006560677.1 | NC_018276_p57 | hypothetical protein | phrog_23774 | unknown function | unknown function | 1 | 37906 | 38352 |
| YP_006560668.1 | NC_018276_p48 | hypothetical protein | singleton | unknown function | unknown function | 1 | 33955 | 34194 |
| YP_006560650.1 | NC_018276_p30 | hypothetical protein | singleton | unknown function | unknown function | 1 | 27826 | 28065 |
| YP_006560669.1 | NC_018276_p49 | hypothetical protein | phrog_186 | DnaD-like helicase loader | DNA, RNA and nucleotide metabolism | 1 | 34187 | 34960 |
| YP_006560679.1 | NC_018276_p59 | hypothetical protein | singleton | unknown function | unknown function | 1 | 38582 | 39235 |
| YP_006560638.1 | NC_018276_p18 | hypothetical protein | phrog_8145 | unknown function | unknown function | 1 | 13527 | 14090 |
| YP_006560684.1 | NC_018276_p64 | single-stranded DNA-binding protein | phrog_44 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 41397 | 41852 |
| YP_006560664.1 | NC_018276_p44 | hypothetical protein | singleton | unknown function | unknown function | 1 | 32353 | 32583 |
| YP_006560674.1 | NC_018276_p54 | hypothetical protein | singleton | unknown function | unknown function | 1 | 37166 | 37360 |
| YP_006560673.1 | NC_018276_p53 | hypothetical protein | singleton | unknown function | unknown function | 1 | 36966 | 37163 |
| YP_006560681.1 | NC_018276_p61 | DNA polymerase III epsilon subunit | phrog_192 | DNA polymerase exonuclease subunit | DNA, RNA and nucleotide metabolism | 1 | 39670 | 40410 |
| YP_006560629.1 | NC_018276_p9 | tail protein | phrog_8193 | major head protein | head and packaging | 1 | 5723 | 6364 |
| YP_006560675.1 | NC_018276_p55 | hypothetical protein | singleton | unknown function | unknown function | 1 | 37410 | 37748 |
| YP_006560652.1 | NC_018276_p32 | hypothetical protein | singleton | unknown function | unknown function | 1 | 28519 | 28647 |
| YP_006560657.1 | NC_018276_p37 | hypothetical protein | singleton | unknown function | unknown function | 1 | 29892 | 30056 |
| YP_006560627.1 | NC_018276_p7 | hypothetical protein | phrog_6539 | unknown function | unknown function | 1 | 4961 | 5425 |
| YP_006560624.1 | NC_018276_p4 | hypothetical protein | phrog_1362 | unknown function | unknown function | 1 | 2018 | 3106 |
| YP_006560672.1 | NC_018276_p52 | hypothetical protein | phrog_11619 | DNA methyltransferase | other | 1 | 36449 | 36946 |
| YP_006560654.1 | NC_018276_p34 | hypothetical protein | singleton | unknown function | unknown function | 1 | 29131 | 29478 |
| YP_006560670.1 | NC_018276_p50 | hypothetical protein | singleton | unknown function | unknown function | 1 | 34973 | 35887 |
| YP_006560645.1 | NC_018276_p25 | hypothetical protein | phrog_36068 | unknown function | unknown function | 1 | 22213 | 25986 |
| YP_006560661.1 | NC_018276_p41 | hypothetical protein | singleton | unknown function | unknown function | 1 | 30785 | 31141 |
| YP_006560642.1 | NC_018276_p22 | phage tail length tape-measure protein | phrog_20660 | tail length tape measure protein | tail | 1 | 15175 | 18798 |
| YP_006560688.1 | NC_018276_p68 | hypothetical protein | phrog_645 | Rnase E | DNA, RNA and nucleotide metabolism | 1 | 44321 | 44920 |
| YP_006560678.1 | NC_018276_p58 | hypothetical protein | singleton | unknown function | unknown function | 1 | 38352 | 38570 |
| YP_006560656.1 | NC_018276_p36 | hypothetical protein | singleton | unknown function | unknown function | 1 | 29776 | 29895 |
| YP_006560628.1 | NC_018276_p8 | hypothetical protein | phrog_29145 | unknown function | unknown function | 1 | 5382 | 5606 |
| YP_006560685.1 | NC_018276_p65 | hypothetical protein | phrog_3193 | unknown function | unknown function | 1 | 41855 | 42634 |
| YP_006560644.1 | NC_018276_p24 | hypothetical protein | phrog_35885 | unknown function | unknown function | 1 | 21338 | 22198 |
| YP_006560655.1 | NC_018276_p35 | hypothetical protein | phrog_5443 | unknown function | unknown function | 1 | 29478 | 29792 |
| YP_006560653.1 | NC_018276_p33 | ribonuclease H | phrog_531 | Rnase H | DNA, RNA and nucleotide metabolism | 1 | 28638 | 29114 |
| YP_006560625.1 | NC_018276_p5 | hypothetical protein | singleton | unknown function | unknown function | 1 | 3154 | 3528 |
| YP_006560622.1 | NC_018276_p2 | hypothetical protein | singleton | unknown function | unknown function | 1 | 1516 | 1749 |
| YP_006560634.1 | NC_018276_p14 | hypothetical protein | phrog_8189 | unknown function | unknown function | 1 | 10834 | 12114 |
| YP_006560660.1 | NC_018276_p40 | hypothetical protein | phrog_35839 | unknown function | unknown function | 1 | 30691 | 30825 |
| YP_006560635.1 | NC_018276_p15 | hypothetical protein | singleton | unknown function | unknown function | 1 | 12124 | 12408 |
| YP_006560633.1 | NC_018276_p13 | phage capsid protein | phrog_7231 | virion structural protein | head and packaging | 1 | 9737 | 10765 |
| YP_006560648.1 | NC_018276_p28 | N-acetylmuramoyl-L-alanine amidase | phrog_435 | endolysin | lysis | 1 | 26760 | 27296 |
| YP_006560640.1 | NC_018276_p20 | hypothetical protein | singleton | unknown function | unknown function | 1 | 14349 | 14765 |
| YP_006560651.1 | NC_018276_p31 | hypothetical protein | phrog_32997 | unknown function | unknown function | 1 | 28271 | 28519 |
| YP_006560680.1 | NC_018276_p60 | hypothetical protein | phrog_144 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 39236 | 39673 |
| YP_006560646.1 | NC_018276_p26 | hypothetical protein | singleton | unknown function | unknown function | 1 | 26007 | 26330 |
| YP_006560647.1 | NC_018276_p27 | hypothetical protein | singleton | unknown function | unknown function | 1 | 26308 | 26763 |
| YP_006560671.1 | NC_018276_p51 | hypothetical protein | phrog_1770 | Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 35896 | 36435 |
| YP_006560659.1 | NC_018276_p39 | hypothetical protein | singleton | unknown function | unknown function | 1 | 30245 | 30505 |
| YP_006560658.1 | NC_018276_p38 | hypothetical protein | singleton | unknown function | unknown function | 1 | 30057 | 30242 |
| YP_006560631.1 | NC_018276_p11 | phage capsid protein | phrog_7376 | portal protein | head and packaging | 1 | 6635 | 8275 |
| YP_006560676.1 | NC_018276_p56 | hypothetical protein | singleton | unknown function | unknown function | 1 | 37745 | 37909 |
| YP_006560643.1 | NC_018276_p23 | hypothetical protein | phrog_19383 | unknown function | unknown function | 1 | 18798 | 21338 |
| YP_006560632.1 | NC_018276_p12 | hypothetical protein | phrog_7970 | virion structural protein | head and packaging | 1 | 8714 | 9655 |
| YP_006560665.1 | NC_018276_p45 | hypothetical protein | singleton | unknown function | unknown function | 1 | 32574 | 32885 |
| YP_006560682.1 | NC_018276_p62 | hypothetical protein | singleton | unknown function | unknown function | 1 | 40403 | 40789 |
| YP_006560666.1 | NC_018276_p46 | hypothetical protein | phrog_1273 | unknown function | unknown function | 1 | 32887 | 33180 |
| YP_006560621.1 | NC_018276_p1 | terminase-like family protein | phrog_38 | terminase large subunit | head and packaging | 1 | 119 | 1438 |
| YP_006560641.1 | NC_018276_p21 | hypothetical protein | singleton | unknown function | unknown function | 1 | 14842 | 15114 |
| YP_006560649.1 | NC_018276_p29 | hypothetical protein | singleton | unknown function | unknown function | 1 | 27300 | 27674 |
| YP_006560663.1 | NC_018276_p43 | hypothetical protein | phrog_298 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 31283 | 32353 |