Genomic map of Staphylococcus phage SpaA1 (NC_018277)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_018277
Definition
Staphylococcus phage SpaA1, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae.
DB of origin
REFSEQ
Length
42784
Host Name
Staphylococcus pasteuri
Host domain
Bacteria
Is prophage?
undef
Number of proteins
63
%GC
35.63
Number of singletons
2
Number of paralogs
5

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_006560728.1 NC_018277_p40 sigma70, RNA polymerase sigma factor phrog_351 RNA polymerase sigma factor transcription regulation 1 31852 32499
YP_006560746.1 NC_018277_p58 hypothetical protein phrog_7303 unknown function unknown function 1 40623 40865
YP_006560692.1 NC_018277_p4 phage terminase, large subunit phrog_2 terminase large subunit head and packaging 1 1591 2865
YP_006560743.1 NC_018277_p55 sigma70, RNA polymerase sigma factor, positive control factor Xpf (N-terminal region) singleton unknown function unknown function 1 39108 39446
YP_006560720.1 NC_018277_p32 hypothetical protein phrog_20324 unknown function unknown function 1 28987 29118
YP_006560731.1 NC_018277_p43 phage related protein phrog_2521 unknown function unknown function 1 34556 34822
YP_006560697.1 NC_018277_p9 phage coat protein gp6 phrog_267 major head protein head and packaging 1 6202 7044
YP_006560733.1 NC_018277_p45 XRE family transcriptional regulator phrog_643 transcriptional regulator transcription regulation 1 35076 35291
YP_006560747.1 NC_018277_p59 phage related protein phrog_4705 unknown function unknown function 1 40858 41124
YP_006560690.1 NC_018277_p2 phage related protein phrog_2395 unknown function unknown function 1 324 536
YP_006560744.1 NC_018277_p56 sigma70, RNA polymerase sigma factor, positive control factor Xpf (C-terminal region) singleton unknown function unknown function 1 39446 39730
YP_006560730.1 NC_018277_p42 predicted DNA replication ATPase related to DnaC phrog_50 DnaC-like helicase loader DNA, RNA and nucleotide metabolism 1 33702 34514
YP_006560695.1 NC_018277_p7 phage related protein gp64 phrog_1048 unknown function unknown function 1 5152 5424
YP_006560712.1 NC_018277_p24 Zn-finger protein phrog_10121 unknown function unknown function -1 21453 21782
YP_006560739.1 NC_018277_p51 phage related protein phrog_3930 unknown function unknown function 1 37399 37677
YP_006560735.1 NC_018277_p47 phage related protein phrog_29245 unknown function unknown function 1 35737 35991
YP_006560696.1 NC_018277_p8 phage scaffold protein phrog_172 head scaffolding protein head and packaging 1 5504 6184
YP_006560737.1 NC_018277_p49 phage related protein phrog_26634 unknown function unknown function 1 36993 37169
YP_006560742.1 NC_018277_p54 Zn-finger protein fused to HTH domain phrog_3910 transcriptional regulator transcription regulation 1 38764 39081
YP_006560699.1 NC_018277_p11 phage head-tail adaptor phrog_1059 head-tail adaptor connector 1 7400 7744
YP_006560698.1 NC_018277_p10 phage related protein gp15 phrog_132 head-tail adaptor connector 1 7095 7403
YP_006560705.1 NC_018277_p17 phage tail tape measure protein phrog_58 tail length tape measure protein tail 1 9889 12828
YP_006560717.1 NC_018277_p29 DNA replication protein, HTH and DnaB-like domains phrog_1835 HTH DNA binding protein DNA, RNA and nucleotide metabolism -1 24635 25516
YP_006560740.1 NC_018277_p52 YopX superfamily phage related protein phrog_98 unknown function unknown function 1 37797 38183
YP_006560700.1 NC_018277_p12 phage protein, HK97 gp10 phrog_5 tail completion or Neck1 protein connector 1 7719 8126
YP_006560702.1 NC_018277_p14 phage related protein phrog_885 major tail protein tail 1 8509 9102
YP_006560716.1 NC_018277_p28 DNA-binding protein containing HTH domain phrog_2190 replication initiation protein DNA, RNA and nucleotide metabolism 1 24022 24630
YP_006560708.1 NC_018277_p20 phage integrase phrog_1 integrase integration and excision 1 19125 20084
YP_006560729.1 NC_018277_p41 DnaD-like replication protein phrog_391 replication initiation O-like DNA, RNA and nucleotide metabolism 1 32723 33739
YP_006560726.1 NC_018277_p38 phage related protein phrog_5266 unknown function unknown function 1 31126 31242
YP_006560713.1 NC_018277_p25 XRE family transcriptional regulator phrog_3 transcriptional repressor transcription regulation -1 21851 22072
YP_006560701.1 NC_018277_p13 phage structural protein phrog_957 head protein head and packaging 1 8132 8494
YP_006560724.1 NC_018277_p36 phage related protein phrog_4292 unknown function unknown function 1 30121 30276
YP_006560694.1 NC_018277_p6 phage minor head protein phrog_115 minor head protein head and packaging 1 4235 5152
YP_006560750.1 NC_018277_p62 hypothetical protein phrog_11304 unknown function unknown function 1 42028 42348
YP_006560745.1 NC_018277_p57 hypothetical protein phrog_16373 unknown function unknown function 1 40317 40493
YP_006560710.1 NC_018277_p22 Holin, phage phi LC3 holin homolog phrog_297 holin lysis 1 20382 20594
YP_006560741.1 NC_018277_p53 recombination protein U phrog_843 Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 38214 38744
YP_006560719.1 NC_018277_p31 DNA-binding protein containing XRE family HTH domain phrog_1728 transcriptional regulator transcription regulation 1 27508 28746
YP_006560714.1 NC_018277_p26 phage related membrane protein phrog_6470 unknown function unknown function 1 22535 22855
YP_006560734.1 NC_018277_p46 HTH containing DNA binding protein, YjcQ family phrog_3675 unknown function unknown function -1 35288 35587
YP_006560711.1 NC_018277_p23 N-acetylmuramoyl-L-alanine amidase phrog_291 endolysin lysis 1 20594 21412
YP_006560691.1 NC_018277_p3 phage terminase, small subunit phrog_2606 terminase small subunit head and packaging 1 687 1601
YP_006560723.1 NC_018277_p35 transcriptional regulator, pbsX phrog_3 transcriptional repressor transcription regulation 1 29908 30096
YP_006560704.1 NC_018277_p16 phage related protein phrog_6924 unknown function unknown function 1 9613 9888
YP_006560718.1 NC_018277_p30 DNA integration/recombination/inversion protein phrog_1 integrase integration and excision -1 25890 26990
YP_006560738.1 NC_018277_p50 hypothetical protein phrog_36176 unknown function unknown function 1 37205 37402
YP_006560736.1 NC_018277_p48 hypothetical protein phrog_4117 unknown function unknown function 1 36597 36959
YP_006560715.1 NC_018277_p27 cell divisionFtsK/SpoIIIE phrog_1358 FtsK/SpoIIIE-like protein moron, auxiliary metabolic gene and host takeover 1 22866 24032
YP_006560693.1 NC_018277_p5 phage portal protein, SPP1 phrog_64 portal protein head and packaging 1 2878 4311
YP_006560749.1 NC_018277_p61 phage related protein phrog_1048 unknown function unknown function 1 41505 41768
YP_006560707.1 NC_018277_p19 phage minor structural protein phrog_1775 minor head protein head and packaging 1 14316 19025
YP_006560706.1 NC_018277_p18 phage tail fiber protein phrog_202 distal tail protein Dit tail 1 12841 14319
YP_006560689.1 NC_018277_p1 phage related protein phrog_8488 unknown function unknown function 1 8 337
YP_006560751.1 NC_018277_p63 hypothetical protein phrog_13356 unknown function unknown function 1 42376 42759
YP_006560727.1 NC_018277_p39 phage related protein phrog_6048 unknown function unknown function 1 31263 31577
YP_006560703.1 NC_018277_p15 phage related protein phrog_1021 unknown function unknown function 1 9149 9577
YP_006560722.1 NC_018277_p34 XRE family transcriptional regulator phrog_3 transcriptional repressor transcription regulation 1 29639 29875
YP_006560732.1 NC_018277_p44 phage related protein phrog_4556 unknown function unknown function 1 34894 35058
YP_006560709.1 NC_018277_p21 hypothetical secreted or membrane protein phrog_1863 unknown function unknown function 1 20098 20379
YP_006560721.1 NC_018277_p33 XRE family transcriptional regulator phrog_8 transcriptional regulator transcription regulation -1 29146 29490
YP_006560725.1 NC_018277_p37 antirepressor phrog_463 anti-repressor transcription regulation 1 30322 31101
YP_006560748.1 NC_018277_p60 phage related protein phrog_1048 unknown function unknown function 1 41263 41505