| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_018277 |
Definition |
Staphylococcus phage SpaA1, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae. |
DB of origin |
REFSEQ |
Length |
42784 |
Host Name |
Staphylococcus pasteuri |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
63 |
%GC |
35.63 |
Number of singletons |
2 |
Number of paralogs |
5 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_006560728.1 | NC_018277_p40 | sigma70, RNA polymerase sigma factor | phrog_351 | RNA polymerase sigma factor | transcription regulation | 1 | 31852 | 32499 |
| YP_006560746.1 | NC_018277_p58 | hypothetical protein | phrog_7303 | unknown function | unknown function | 1 | 40623 | 40865 |
| YP_006560692.1 | NC_018277_p4 | phage terminase, large subunit | phrog_2 | terminase large subunit | head and packaging | 1 | 1591 | 2865 |
| YP_006560743.1 | NC_018277_p55 | sigma70, RNA polymerase sigma factor, positive control factor Xpf (N-terminal region) | singleton | unknown function | unknown function | 1 | 39108 | 39446 |
| YP_006560720.1 | NC_018277_p32 | hypothetical protein | phrog_20324 | unknown function | unknown function | 1 | 28987 | 29118 |
| YP_006560731.1 | NC_018277_p43 | phage related protein | phrog_2521 | unknown function | unknown function | 1 | 34556 | 34822 |
| YP_006560697.1 | NC_018277_p9 | phage coat protein gp6 | phrog_267 | major head protein | head and packaging | 1 | 6202 | 7044 |
| YP_006560733.1 | NC_018277_p45 | XRE family transcriptional regulator | phrog_643 | transcriptional regulator | transcription regulation | 1 | 35076 | 35291 |
| YP_006560747.1 | NC_018277_p59 | phage related protein | phrog_4705 | unknown function | unknown function | 1 | 40858 | 41124 |
| YP_006560690.1 | NC_018277_p2 | phage related protein | phrog_2395 | unknown function | unknown function | 1 | 324 | 536 |
| YP_006560744.1 | NC_018277_p56 | sigma70, RNA polymerase sigma factor, positive control factor Xpf (C-terminal region) | singleton | unknown function | unknown function | 1 | 39446 | 39730 |
| YP_006560730.1 | NC_018277_p42 | predicted DNA replication ATPase related to DnaC | phrog_50 | DnaC-like helicase loader | DNA, RNA and nucleotide metabolism | 1 | 33702 | 34514 |
| YP_006560695.1 | NC_018277_p7 | phage related protein gp64 | phrog_1048 | unknown function | unknown function | 1 | 5152 | 5424 |
| YP_006560712.1 | NC_018277_p24 | Zn-finger protein | phrog_10121 | unknown function | unknown function | -1 | 21453 | 21782 |
| YP_006560739.1 | NC_018277_p51 | phage related protein | phrog_3930 | unknown function | unknown function | 1 | 37399 | 37677 |
| YP_006560735.1 | NC_018277_p47 | phage related protein | phrog_29245 | unknown function | unknown function | 1 | 35737 | 35991 |
| YP_006560696.1 | NC_018277_p8 | phage scaffold protein | phrog_172 | head scaffolding protein | head and packaging | 1 | 5504 | 6184 |
| YP_006560737.1 | NC_018277_p49 | phage related protein | phrog_26634 | unknown function | unknown function | 1 | 36993 | 37169 |
| YP_006560742.1 | NC_018277_p54 | Zn-finger protein fused to HTH domain | phrog_3910 | transcriptional regulator | transcription regulation | 1 | 38764 | 39081 |
| YP_006560699.1 | NC_018277_p11 | phage head-tail adaptor | phrog_1059 | head-tail adaptor | connector | 1 | 7400 | 7744 |
| YP_006560698.1 | NC_018277_p10 | phage related protein gp15 | phrog_132 | head-tail adaptor | connector | 1 | 7095 | 7403 |
| YP_006560705.1 | NC_018277_p17 | phage tail tape measure protein | phrog_58 | tail length tape measure protein | tail | 1 | 9889 | 12828 |
| YP_006560717.1 | NC_018277_p29 | DNA replication protein, HTH and DnaB-like domains | phrog_1835 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 24635 | 25516 |
| YP_006560740.1 | NC_018277_p52 | YopX superfamily phage related protein | phrog_98 | unknown function | unknown function | 1 | 37797 | 38183 |
| YP_006560700.1 | NC_018277_p12 | phage protein, HK97 gp10 | phrog_5 | tail completion or Neck1 protein | connector | 1 | 7719 | 8126 |
| YP_006560702.1 | NC_018277_p14 | phage related protein | phrog_885 | major tail protein | tail | 1 | 8509 | 9102 |
| YP_006560716.1 | NC_018277_p28 | DNA-binding protein containing HTH domain | phrog_2190 | replication initiation protein | DNA, RNA and nucleotide metabolism | 1 | 24022 | 24630 |
| YP_006560708.1 | NC_018277_p20 | phage integrase | phrog_1 | integrase | integration and excision | 1 | 19125 | 20084 |
| YP_006560729.1 | NC_018277_p41 | DnaD-like replication protein | phrog_391 | replication initiation O-like | DNA, RNA and nucleotide metabolism | 1 | 32723 | 33739 |
| YP_006560726.1 | NC_018277_p38 | phage related protein | phrog_5266 | unknown function | unknown function | 1 | 31126 | 31242 |
| YP_006560713.1 | NC_018277_p25 | XRE family transcriptional regulator | phrog_3 | transcriptional repressor | transcription regulation | -1 | 21851 | 22072 |
| YP_006560701.1 | NC_018277_p13 | phage structural protein | phrog_957 | head protein | head and packaging | 1 | 8132 | 8494 |
| YP_006560724.1 | NC_018277_p36 | phage related protein | phrog_4292 | unknown function | unknown function | 1 | 30121 | 30276 |
| YP_006560694.1 | NC_018277_p6 | phage minor head protein | phrog_115 | minor head protein | head and packaging | 1 | 4235 | 5152 |
| YP_006560750.1 | NC_018277_p62 | hypothetical protein | phrog_11304 | unknown function | unknown function | 1 | 42028 | 42348 |
| YP_006560745.1 | NC_018277_p57 | hypothetical protein | phrog_16373 | unknown function | unknown function | 1 | 40317 | 40493 |
| YP_006560710.1 | NC_018277_p22 | Holin, phage phi LC3 holin homolog | phrog_297 | holin | lysis | 1 | 20382 | 20594 |
| YP_006560741.1 | NC_018277_p53 | recombination protein U | phrog_843 | Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 38214 | 38744 |
| YP_006560719.1 | NC_018277_p31 | DNA-binding protein containing XRE family HTH domain | phrog_1728 | transcriptional regulator | transcription regulation | 1 | 27508 | 28746 |
| YP_006560714.1 | NC_018277_p26 | phage related membrane protein | phrog_6470 | unknown function | unknown function | 1 | 22535 | 22855 |
| YP_006560734.1 | NC_018277_p46 | HTH containing DNA binding protein, YjcQ family | phrog_3675 | unknown function | unknown function | -1 | 35288 | 35587 |
| YP_006560711.1 | NC_018277_p23 | N-acetylmuramoyl-L-alanine amidase | phrog_291 | endolysin | lysis | 1 | 20594 | 21412 |
| YP_006560691.1 | NC_018277_p3 | phage terminase, small subunit | phrog_2606 | terminase small subunit | head and packaging | 1 | 687 | 1601 |
| YP_006560723.1 | NC_018277_p35 | transcriptional regulator, pbsX | phrog_3 | transcriptional repressor | transcription regulation | 1 | 29908 | 30096 |
| YP_006560704.1 | NC_018277_p16 | phage related protein | phrog_6924 | unknown function | unknown function | 1 | 9613 | 9888 |
| YP_006560718.1 | NC_018277_p30 | DNA integration/recombination/inversion protein | phrog_1 | integrase | integration and excision | -1 | 25890 | 26990 |
| YP_006560738.1 | NC_018277_p50 | hypothetical protein | phrog_36176 | unknown function | unknown function | 1 | 37205 | 37402 |
| YP_006560736.1 | NC_018277_p48 | hypothetical protein | phrog_4117 | unknown function | unknown function | 1 | 36597 | 36959 |
| YP_006560715.1 | NC_018277_p27 | cell divisionFtsK/SpoIIIE | phrog_1358 | FtsK/SpoIIIE-like protein | moron, auxiliary metabolic gene and host takeover | 1 | 22866 | 24032 |
| YP_006560693.1 | NC_018277_p5 | phage portal protein, SPP1 | phrog_64 | portal protein | head and packaging | 1 | 2878 | 4311 |
| YP_006560749.1 | NC_018277_p61 | phage related protein | phrog_1048 | unknown function | unknown function | 1 | 41505 | 41768 |
| YP_006560707.1 | NC_018277_p19 | phage minor structural protein | phrog_1775 | minor head protein | head and packaging | 1 | 14316 | 19025 |
| YP_006560706.1 | NC_018277_p18 | phage tail fiber protein | phrog_202 | distal tail protein Dit | tail | 1 | 12841 | 14319 |
| YP_006560689.1 | NC_018277_p1 | phage related protein | phrog_8488 | unknown function | unknown function | 1 | 8 | 337 |
| YP_006560751.1 | NC_018277_p63 | hypothetical protein | phrog_13356 | unknown function | unknown function | 1 | 42376 | 42759 |
| YP_006560727.1 | NC_018277_p39 | phage related protein | phrog_6048 | unknown function | unknown function | 1 | 31263 | 31577 |
| YP_006560703.1 | NC_018277_p15 | phage related protein | phrog_1021 | unknown function | unknown function | 1 | 9149 | 9577 |
| YP_006560722.1 | NC_018277_p34 | XRE family transcriptional regulator | phrog_3 | transcriptional repressor | transcription regulation | 1 | 29639 | 29875 |
| YP_006560732.1 | NC_018277_p44 | phage related protein | phrog_4556 | unknown function | unknown function | 1 | 34894 | 35058 |
| YP_006560709.1 | NC_018277_p21 | hypothetical secreted or membrane protein | phrog_1863 | unknown function | unknown function | 1 | 20098 | 20379 |
| YP_006560721.1 | NC_018277_p33 | XRE family transcriptional regulator | phrog_8 | transcriptional regulator | transcription regulation | -1 | 29146 | 29490 |
| YP_006560725.1 | NC_018277_p37 | antirepressor | phrog_463 | anti-repressor | transcription regulation | 1 | 30322 | 31101 |
| YP_006560748.1 | NC_018277_p60 | phage related protein | phrog_1048 | unknown function | unknown function | 1 | 41263 | 41505 |