Genomic map of Salmonella phage vB_SosS_Oslo (NC_018279)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_018279
Definition
Salmonella phage vB_SosS_Oslo, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae.
DB of origin
REFSEQ
Length
49116
Host Name
Salmonella
Host domain
Bacteria
Is prophage?
undef
Number of proteins
79
%GC
48.73
Number of singletons
5
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_006560881.1 NC_018279_p75 class II holin phrog_20 holin lysis 1 46079 46282
YP_006560829.1 NC_018279_p23 hypothetical protein phrog_2735 unknown function unknown function 1 15943 16203
YP_006560831.1 NC_018279_p25 minor tail protein phrog_18 minor tail protein tail 1 16660 17364
YP_006560826.1 NC_018279_p20 hypothetical protein phrog_20460 unknown function unknown function 1 12915 13301
YP_006560855.1 NC_018279_p49 antitermination protein N phrog_271 anti-termination protein N-like transcription regulation -1 34439 34822
YP_006560872.1 NC_018279_p66 NinD protein phrog_8091 unknown function unknown function 1 43086 43259
YP_006560813.1 NC_018279_p7 hypothetical protein phrog_771 virion structural protein head and packaging 1 5698 6774
YP_006560834.1 NC_018279_p28 tail fiber protein phrog_31 central tail fiber J tail 1 18563 21733
YP_006560836.1 NC_018279_p30 minor tail protein phrog_1591 tail fiber protein tail 1 22712 24010
YP_006560838.1 NC_018279_p32 error-prone lesion bypass DNA polymerase V phrog_1268 DNA polymerase DNA, RNA and nucleotide metabolism 1 24669 25937
YP_006560868.1 NC_018279_p62 hypothetical protein phrog_5903 unknown function unknown function 1 40901 41227
YP_006560818.1 NC_018279_p12 hypothetical protein phrog_5 tail completion or Neck1 protein connector 1 7958 8353
YP_006560849.1 NC_018279_p43 Arf protein phrog_2445 Erf recombination cofactor Arf DNA, RNA and nucleotide metabolism -1 31936 32079
YP_006560810.1 NC_018279_p4 head morphogenesis protein phrog_758 head morphogenesis head and packaging 1 3024 3950
YP_006560811.1 NC_018279_p5 hypothetical protein phrog_760 unknown function unknown function 1 3953 5218
YP_006560845.1 NC_018279_p39 hypothetical protein phrog_1117 unknown function unknown function -1 30441 30611
YP_006560867.1 NC_018279_p61 DNA primase/helicase phrog_239 DNA primase/helicase DNA, RNA and nucleotide metabolism 1 38944 40824
YP_006560859.1 NC_018279_p53 hypothetical protein phrog_2602 unknown function unknown function -1 35730 36248
YP_006560863.1 NC_018279_p57 CII protein phrog_191 CII-like transcriptional activator transcription regulation 1 37527 37817
YP_006560882.1 NC_018279_p76 lysin phrog_7 endolysin lysis 1 46254 46757
YP_006560808.1 NC_018279_p2 terminase large subunit phrog_2 terminase large subunit head and packaging 1 602 1699
YP_006560871.1 NC_018279_p65 NinC protein phrog_424 phosphoadenosine phosphosulfate reductase moron, auxiliary metabolic gene and host takeover 1 42217 43089
YP_006560814.1 NC_018279_p8 hypothetical protein phrog_2138 unknown function unknown function 1 6784 6963
YP_006560884.1 NC_018279_p78 hypothetical protein phrog_2657 transcriptional regulator transcription regulation 1 47434 48120
YP_006560866.1 NC_018279_p60 hypothetical protein phrog_21848 unknown function unknown function 1 38837 38944
YP_006560862.1 NC_018279_p56 Cro repressor protein phrog_3 transcriptional repressor transcription regulation 1 37183 37392
YP_006560880.1 NC_018279_p74 antitermination protein Q phrog_943 anti-termination protein Q-like transcription regulation 1 45097 45615
YP_006560875.1 NC_018279_p69 NinF protein phrog_672 unknown function unknown function 1 43739 43915
YP_006560822.1 NC_018279_p16 KilA domain protein phrog_1136 unknown function unknown function 1 10409 11137
YP_006560870.1 NC_018279_p64 DNA methyltransferase protein phrog_111 DNA methyltransferase other 1 41693 42220
YP_006560852.1 NC_018279_p46 hypothetical protein phrog_923 unknown function unknown function -1 32608 33192
YP_006560819.1 NC_018279_p13 hypothetical protein phrog_782 unknown function unknown function 1 8350 8736
YP_006560825.1 NC_018279_p19 antirepressor protein Ant phrog_245 anti-repressor Ant transcription regulation 1 11835 12809
YP_006560879.1 NC_018279_p73 NinZ protein phrog_1402 unknown function unknown function 1 44921 45100
YP_006560816.1 NC_018279_p10 hypothetical protein phrog_1261 unknown function unknown function 1 7416 7604
YP_006560850.1 NC_018279_p44 Kil protein phrog_2394 Kil protein for bacterial septation inhibition other -1 32069 32257
YP_006560885.1 NC_018279_p79 hypothetical protein phrog_513 transposase integration and excision 1 48446 49084
YP_006560878.1 NC_018279_p72 NinH protein phrog_268 unknown function unknown function 1 44737 44940
YP_006560856.1 NC_018279_p50 hypothetical protein phrog_5948 unknown function unknown function 1 35179 35388
YP_006560846.1 NC_018279_p40 Abc2 protein phrog_656 abc2 anti-RecBCD moron, auxiliary metabolic gene and host takeover -1 30622 30915
YP_006560823.1 NC_018279_p17 regulator protein phrog_3178 Arc-like DNA binding domain transcription regulation -1 11179 11556
YP_006560833.1 NC_018279_p27 tail assembly protein phrog_32 tail assembly protein tail 1 18113 18553
YP_006560843.1 NC_018279_p37 hypothetical protein phrog_250 unknown function unknown function -1 29227 29958
YP_006560877.1 NC_018279_p71 NinY protein phrog_3496 unknown function unknown function 1 44516 44716
YP_006560844.1 NC_018279_p38 EaE protein phrog_614 unknown function unknown function -1 30067 30444
YP_006560841.1 NC_018279_p35 EaA protein phrog_60 unknown function unknown function -1 27897 28751
YP_006560858.1 NC_018279_p52 hypothetical protein singleton unknown function unknown function -1 35583 35684
YP_006560807.1 NC_018279_p1 hypothetical protein phrog_546 unknown function unknown function 1 1 459
YP_006560840.1 NC_018279_p34 hypothetical protein singleton unknown function unknown function -1 27724 27837
YP_006560812.1 NC_018279_p6 hypothetical protein phrog_766 head decoration head and packaging 1 5231 5680
YP_006560883.1 NC_018279_p77 endopeptidase phrog_13 Rz-like spanin lysis 1 46754 47221
YP_006560864.1 NC_018279_p58 hypothetical protein phrog_1331 unknown function unknown function 1 37837 37998
YP_006560828.1 NC_018279_p22 minor tail protein phrog_14 minor tail protein tail 1 15584 15931
YP_006560821.1 NC_018279_p15 hypothetical protein phrog_791 unknown function unknown function 1 9535 10188
YP_006560873.1 NC_018279_p67 NinE protein phrog_288 unknown function unknown function 1 43226 43402
YP_006560842.1 NC_018279_p36 DNA methyltransferase phrog_11564 DNA methyltransferase other -1 28850 29227
YP_006560827.1 NC_018279_p21 tail length tape-measure protein phrog_1538 tail length tape measure protein tail 1 13341 15581
YP_006560847.1 NC_018279_p41 hypothetical protein phrog_44 single strand DNA binding protein DNA, RNA and nucleotide metabolism -1 30939 31322
YP_006560876.1 NC_018279_p70 NinG protein phrog_171 NinG/ Rap DNA junction specific endonuclease DNA, RNA and nucleotide metabolism 1 43908 44519
YP_006560835.1 NC_018279_p29 hypothetical protein phrog_1265 membrane protein moron, auxiliary metabolic gene and host takeover 1 21742 22701
YP_006560853.1 NC_018279_p47 hypothetical protein phrog_3054 unknown function unknown function -1 33245 33694
YP_006560809.1 NC_018279_p3 portal protein phrog_146 portal protein head and packaging 1 1715 3064
YP_006560824.1 NC_018279_p18 Arc-like DNA binding domain protein phrog_228 Arc-like repressor transcription regulation 1 11672 11842
YP_006560839.1 NC_018279_p33 integrase phrog_1 integrase integration and excision 1 26419 27630
YP_006560820.1 NC_018279_p14 major tail protein phrog_853 major tail protein tail 1 8752 9489
YP_006560857.1 NC_018279_p51 hypothetical protein singleton unknown function unknown function -1 35430 35555
YP_006560817.1 NC_018279_p11 hypothetical protein phrog_797 unknown function unknown function 1 7588 7950
YP_006560874.1 NC_018279_p68 NinX protein phrog_444 unknown function unknown function 1 43405 43746
YP_006560861.1 NC_018279_p55 cI major repressor protein phrog_4 transcriptional repressor transcription regulation -1 36420 37073
YP_006560830.1 NC_018279_p24 hypothetical protein phrog_10490 unknown function unknown function -1 16208 16495
YP_006560860.1 NC_018279_p54 hypothetical protein singleton unknown function unknown function -1 36284 36400
YP_006560865.1 NC_018279_p59 DNA replication protein O phrog_270 replication initiation protein DNA, RNA and nucleotide metabolism 1 37985 38833
YP_006560869.1 NC_018279_p63 NinB protein phrog_72 NinB/ Orf homologous recombination mediator DNA, RNA and nucleotide metabolism 1 41250 41696
YP_006560815.1 NC_018279_p9 hypothetical protein phrog_786 unknown function unknown function 1 7015 7416
YP_006560848.1 NC_018279_p42 essential recombination function Erf phrog_155 Erf-like ssDNA annealing protein DNA, RNA and nucleotide metabolism -1 31322 31939
YP_006560832.1 NC_018279_p26 tail assembly protein phrog_30 minor tail protein tail 1 17364 18083
YP_006560851.1 NC_018279_p45 CIII protein singleton CIII anti-termination transcription regulation -1 32238 32486
YP_006560837.1 NC_018279_p31 errror-prone repair protein UmuD phrog_10470 UmuD-like protein DNA, RNA and nucleotide metabolism 1 24427 24666
YP_006560854.1 NC_018279_p48 superinfection exclusion protein phrog_1301 superinfection exclusion; inhibits SieB moron, auxiliary metabolic gene and host takeover 1 33839 34426