| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_018279 |
Definition |
Salmonella phage vB_SosS_Oslo, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae. |
DB of origin |
REFSEQ |
Length |
49116 |
Host Name |
Salmonella |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
79 |
%GC |
48.73 |
Number of singletons |
5 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_006560881.1 | NC_018279_p75 | class II holin | phrog_20 | holin | lysis | 1 | 46079 | 46282 |
| YP_006560829.1 | NC_018279_p23 | hypothetical protein | phrog_2735 | unknown function | unknown function | 1 | 15943 | 16203 |
| YP_006560831.1 | NC_018279_p25 | minor tail protein | phrog_18 | minor tail protein | tail | 1 | 16660 | 17364 |
| YP_006560826.1 | NC_018279_p20 | hypothetical protein | phrog_20460 | unknown function | unknown function | 1 | 12915 | 13301 |
| YP_006560855.1 | NC_018279_p49 | antitermination protein N | phrog_271 | anti-termination protein N-like | transcription regulation | -1 | 34439 | 34822 |
| YP_006560872.1 | NC_018279_p66 | NinD protein | phrog_8091 | unknown function | unknown function | 1 | 43086 | 43259 |
| YP_006560813.1 | NC_018279_p7 | hypothetical protein | phrog_771 | virion structural protein | head and packaging | 1 | 5698 | 6774 |
| YP_006560834.1 | NC_018279_p28 | tail fiber protein | phrog_31 | central tail fiber J | tail | 1 | 18563 | 21733 |
| YP_006560836.1 | NC_018279_p30 | minor tail protein | phrog_1591 | tail fiber protein | tail | 1 | 22712 | 24010 |
| YP_006560838.1 | NC_018279_p32 | error-prone lesion bypass DNA polymerase V | phrog_1268 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 24669 | 25937 |
| YP_006560868.1 | NC_018279_p62 | hypothetical protein | phrog_5903 | unknown function | unknown function | 1 | 40901 | 41227 |
| YP_006560818.1 | NC_018279_p12 | hypothetical protein | phrog_5 | tail completion or Neck1 protein | connector | 1 | 7958 | 8353 |
| YP_006560849.1 | NC_018279_p43 | Arf protein | phrog_2445 | Erf recombination cofactor Arf | DNA, RNA and nucleotide metabolism | -1 | 31936 | 32079 |
| YP_006560810.1 | NC_018279_p4 | head morphogenesis protein | phrog_758 | head morphogenesis | head and packaging | 1 | 3024 | 3950 |
| YP_006560811.1 | NC_018279_p5 | hypothetical protein | phrog_760 | unknown function | unknown function | 1 | 3953 | 5218 |
| YP_006560845.1 | NC_018279_p39 | hypothetical protein | phrog_1117 | unknown function | unknown function | -1 | 30441 | 30611 |
| YP_006560867.1 | NC_018279_p61 | DNA primase/helicase | phrog_239 | DNA primase/helicase | DNA, RNA and nucleotide metabolism | 1 | 38944 | 40824 |
| YP_006560859.1 | NC_018279_p53 | hypothetical protein | phrog_2602 | unknown function | unknown function | -1 | 35730 | 36248 |
| YP_006560863.1 | NC_018279_p57 | CII protein | phrog_191 | CII-like transcriptional activator | transcription regulation | 1 | 37527 | 37817 |
| YP_006560882.1 | NC_018279_p76 | lysin | phrog_7 | endolysin | lysis | 1 | 46254 | 46757 |
| YP_006560808.1 | NC_018279_p2 | terminase large subunit | phrog_2 | terminase large subunit | head and packaging | 1 | 602 | 1699 |
| YP_006560871.1 | NC_018279_p65 | NinC protein | phrog_424 | phosphoadenosine phosphosulfate reductase | moron, auxiliary metabolic gene and host takeover | 1 | 42217 | 43089 |
| YP_006560814.1 | NC_018279_p8 | hypothetical protein | phrog_2138 | unknown function | unknown function | 1 | 6784 | 6963 |
| YP_006560884.1 | NC_018279_p78 | hypothetical protein | phrog_2657 | transcriptional regulator | transcription regulation | 1 | 47434 | 48120 |
| YP_006560866.1 | NC_018279_p60 | hypothetical protein | phrog_21848 | unknown function | unknown function | 1 | 38837 | 38944 |
| YP_006560862.1 | NC_018279_p56 | Cro repressor protein | phrog_3 | transcriptional repressor | transcription regulation | 1 | 37183 | 37392 |
| YP_006560880.1 | NC_018279_p74 | antitermination protein Q | phrog_943 | anti-termination protein Q-like | transcription regulation | 1 | 45097 | 45615 |
| YP_006560875.1 | NC_018279_p69 | NinF protein | phrog_672 | unknown function | unknown function | 1 | 43739 | 43915 |
| YP_006560822.1 | NC_018279_p16 | KilA domain protein | phrog_1136 | unknown function | unknown function | 1 | 10409 | 11137 |
| YP_006560870.1 | NC_018279_p64 | DNA methyltransferase protein | phrog_111 | DNA methyltransferase | other | 1 | 41693 | 42220 |
| YP_006560852.1 | NC_018279_p46 | hypothetical protein | phrog_923 | unknown function | unknown function | -1 | 32608 | 33192 |
| YP_006560819.1 | NC_018279_p13 | hypothetical protein | phrog_782 | unknown function | unknown function | 1 | 8350 | 8736 |
| YP_006560825.1 | NC_018279_p19 | antirepressor protein Ant | phrog_245 | anti-repressor Ant | transcription regulation | 1 | 11835 | 12809 |
| YP_006560879.1 | NC_018279_p73 | NinZ protein | phrog_1402 | unknown function | unknown function | 1 | 44921 | 45100 |
| YP_006560816.1 | NC_018279_p10 | hypothetical protein | phrog_1261 | unknown function | unknown function | 1 | 7416 | 7604 |
| YP_006560850.1 | NC_018279_p44 | Kil protein | phrog_2394 | Kil protein for bacterial septation inhibition | other | -1 | 32069 | 32257 |
| YP_006560885.1 | NC_018279_p79 | hypothetical protein | phrog_513 | transposase | integration and excision | 1 | 48446 | 49084 |
| YP_006560878.1 | NC_018279_p72 | NinH protein | phrog_268 | unknown function | unknown function | 1 | 44737 | 44940 |
| YP_006560856.1 | NC_018279_p50 | hypothetical protein | phrog_5948 | unknown function | unknown function | 1 | 35179 | 35388 |
| YP_006560846.1 | NC_018279_p40 | Abc2 protein | phrog_656 | abc2 anti-RecBCD | moron, auxiliary metabolic gene and host takeover | -1 | 30622 | 30915 |
| YP_006560823.1 | NC_018279_p17 | regulator protein | phrog_3178 | Arc-like DNA binding domain | transcription regulation | -1 | 11179 | 11556 |
| YP_006560833.1 | NC_018279_p27 | tail assembly protein | phrog_32 | tail assembly protein | tail | 1 | 18113 | 18553 |
| YP_006560843.1 | NC_018279_p37 | hypothetical protein | phrog_250 | unknown function | unknown function | -1 | 29227 | 29958 |
| YP_006560877.1 | NC_018279_p71 | NinY protein | phrog_3496 | unknown function | unknown function | 1 | 44516 | 44716 |
| YP_006560844.1 | NC_018279_p38 | EaE protein | phrog_614 | unknown function | unknown function | -1 | 30067 | 30444 |
| YP_006560841.1 | NC_018279_p35 | EaA protein | phrog_60 | unknown function | unknown function | -1 | 27897 | 28751 |
| YP_006560858.1 | NC_018279_p52 | hypothetical protein | singleton | unknown function | unknown function | -1 | 35583 | 35684 |
| YP_006560807.1 | NC_018279_p1 | hypothetical protein | phrog_546 | unknown function | unknown function | 1 | 1 | 459 |
| YP_006560840.1 | NC_018279_p34 | hypothetical protein | singleton | unknown function | unknown function | -1 | 27724 | 27837 |
| YP_006560812.1 | NC_018279_p6 | hypothetical protein | phrog_766 | head decoration | head and packaging | 1 | 5231 | 5680 |
| YP_006560883.1 | NC_018279_p77 | endopeptidase | phrog_13 | Rz-like spanin | lysis | 1 | 46754 | 47221 |
| YP_006560864.1 | NC_018279_p58 | hypothetical protein | phrog_1331 | unknown function | unknown function | 1 | 37837 | 37998 |
| YP_006560828.1 | NC_018279_p22 | minor tail protein | phrog_14 | minor tail protein | tail | 1 | 15584 | 15931 |
| YP_006560821.1 | NC_018279_p15 | hypothetical protein | phrog_791 | unknown function | unknown function | 1 | 9535 | 10188 |
| YP_006560873.1 | NC_018279_p67 | NinE protein | phrog_288 | unknown function | unknown function | 1 | 43226 | 43402 |
| YP_006560842.1 | NC_018279_p36 | DNA methyltransferase | phrog_11564 | DNA methyltransferase | other | -1 | 28850 | 29227 |
| YP_006560827.1 | NC_018279_p21 | tail length tape-measure protein | phrog_1538 | tail length tape measure protein | tail | 1 | 13341 | 15581 |
| YP_006560847.1 | NC_018279_p41 | hypothetical protein | phrog_44 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 30939 | 31322 |
| YP_006560876.1 | NC_018279_p70 | NinG protein | phrog_171 | NinG/ Rap DNA junction specific endonuclease | DNA, RNA and nucleotide metabolism | 1 | 43908 | 44519 |
| YP_006560835.1 | NC_018279_p29 | hypothetical protein | phrog_1265 | membrane protein | moron, auxiliary metabolic gene and host takeover | 1 | 21742 | 22701 |
| YP_006560853.1 | NC_018279_p47 | hypothetical protein | phrog_3054 | unknown function | unknown function | -1 | 33245 | 33694 |
| YP_006560809.1 | NC_018279_p3 | portal protein | phrog_146 | portal protein | head and packaging | 1 | 1715 | 3064 |
| YP_006560824.1 | NC_018279_p18 | Arc-like DNA binding domain protein | phrog_228 | Arc-like repressor | transcription regulation | 1 | 11672 | 11842 |
| YP_006560839.1 | NC_018279_p33 | integrase | phrog_1 | integrase | integration and excision | 1 | 26419 | 27630 |
| YP_006560820.1 | NC_018279_p14 | major tail protein | phrog_853 | major tail protein | tail | 1 | 8752 | 9489 |
| YP_006560857.1 | NC_018279_p51 | hypothetical protein | singleton | unknown function | unknown function | -1 | 35430 | 35555 |
| YP_006560817.1 | NC_018279_p11 | hypothetical protein | phrog_797 | unknown function | unknown function | 1 | 7588 | 7950 |
| YP_006560874.1 | NC_018279_p68 | NinX protein | phrog_444 | unknown function | unknown function | 1 | 43405 | 43746 |
| YP_006560861.1 | NC_018279_p55 | cI major repressor protein | phrog_4 | transcriptional repressor | transcription regulation | -1 | 36420 | 37073 |
| YP_006560830.1 | NC_018279_p24 | hypothetical protein | phrog_10490 | unknown function | unknown function | -1 | 16208 | 16495 |
| YP_006560860.1 | NC_018279_p54 | hypothetical protein | singleton | unknown function | unknown function | -1 | 36284 | 36400 |
| YP_006560865.1 | NC_018279_p59 | DNA replication protein O | phrog_270 | replication initiation protein | DNA, RNA and nucleotide metabolism | 1 | 37985 | 38833 |
| YP_006560869.1 | NC_018279_p63 | NinB protein | phrog_72 | NinB/ Orf homologous recombination mediator | DNA, RNA and nucleotide metabolism | 1 | 41250 | 41696 |
| YP_006560815.1 | NC_018279_p9 | hypothetical protein | phrog_786 | unknown function | unknown function | 1 | 7015 | 7416 |
| YP_006560848.1 | NC_018279_p42 | essential recombination function Erf | phrog_155 | Erf-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | -1 | 31322 | 31939 |
| YP_006560832.1 | NC_018279_p26 | tail assembly protein | phrog_30 | minor tail protein | tail | 1 | 17364 | 18083 |
| YP_006560851.1 | NC_018279_p45 | CIII protein | singleton | CIII anti-termination | transcription regulation | -1 | 32238 | 32486 |
| YP_006560837.1 | NC_018279_p31 | errror-prone repair protein UmuD | phrog_10470 | UmuD-like protein | DNA, RNA and nucleotide metabolism | 1 | 24427 | 24666 |
| YP_006560854.1 | NC_018279_p48 | superinfection exclusion protein | phrog_1301 | superinfection exclusion; inhibits SieB | moron, auxiliary metabolic gene and host takeover | 1 | 33839 | 34426 |