Genomic map of Staphylococcus virus IPLA5 (NC_018281)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_018281
Definition
Staphylococcus phage vB_SepiS-phiIPLA5, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Phietavirus.
DB of origin
REFSEQ
Length
43581
Host Name
Staphylococcus epidermidis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
66
%GC
34.72
Number of singletons
1
Number of paralogs
2

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_006561002.1 NC_018281_p61 hypothetical protein phrog_8714 unknown function unknown function 1 41443 41622
YP_006560951.1 NC_018281_p10 head tail adaptor phrog_25 head closure Hc1 connector 1 6764 7093
YP_006560989.1 NC_018281_p48 hypothetical protein phrog_433 unknown function unknown function 1 37443 37688
YP_006560948.1 NC_018281_p7 major head protein phrog_544 major head protein head and packaging 1 5320 6150
YP_006560990.1 NC_018281_p49 resolvase phrog_140 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 37697 38104
YP_006561005.1 NC_018281_p64 RinB phrog_152 RinB-like transcriptional activator transcription regulation 1 42403 42582
YP_006560959.1 NC_018281_p18 virion associated hydrolase phrog_663 minor head protein head and packaging 1 13472 15328
YP_006560971.1 NC_018281_p30 integrase phrog_1 integrase integration and excision -1 26983 28032
YP_006560976.1 NC_018281_p35 hypothetical protein phrog_6431 unknown function unknown function 1 30610 30771
YP_006560957.1 NC_018281_p16 tail tape measure protein phrog_58 tail length tape measure protein tail 1 9400 12504
YP_006561000.1 NC_018281_p59 nuclease phrog_452 endonuclease DNA, RNA and nucleotide metabolism 1 40952 41296
YP_006560949.1 NC_018281_p8 rho termination factor phrog_390 Arc-like repressor transcription regulation 1 6167 6457
YP_006560994.1 NC_018281_p53 hypothetical protein phrog_2044 RNA polymerase beta subunit DNA, RNA and nucleotide metabolism 1 39119 39349
YP_006560945.1 NC_018281_p4 minor capsid protein phrog_115 minor head protein head and packaging 1 3324 4277
YP_006561001.1 NC_018281_p60 hypothetical protein phrog_1034 unknown function unknown function 1 41301 41453
YP_006560982.1 NC_018281_p41 recombination protein phrog_155 Erf-like ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 33211 33855
YP_006560953.1 NC_018281_p12 hypothetical protein phrog_176 tail terminator connector 1 7512 7949
YP_006560980.1 NC_018281_p39 hypothetical protein phrog_5815 unknown function unknown function 1 32516 32692
YP_006560975.1 NC_018281_p34 cro phrog_3 transcriptional repressor transcription regulation 1 30384 30596
YP_006560997.1 NC_018281_p56 hypothetical protein phrog_987 unknown function unknown function 1 40140 40319
YP_006560955.1 NC_018281_p14 tail protein phrog_183 tail chaperone protein tail 1 8538 9032
YP_006560950.1 NC_018281_p9 DNA packaging protein phrog_1161 head-tail adaptor connector 1 6457 6771
YP_006560985.1 NC_018281_p44 DNA replication protein phrog_186 DnaD-like helicase loader DNA, RNA and nucleotide metabolism 1 34950 35651
YP_006560947.1 NC_018281_p6 scaffolding protein phrog_194 head scaffolding protein head and packaging 1 4706 5302
YP_006560998.1 NC_018281_p57 hypothetical protein singleton unknown function unknown function 1 40336 40536
YP_006560943.1 NC_018281_p2 large terminase subunit phrog_2 terminase large subunit head and packaging 1 660 1925
YP_006560961.1 NC_018281_p20 hypothetical protein phrog_257 minor tail protein tail 1 18009 19541
YP_006560967.1 NC_018281_p26 tail fiber protein phrog_257 minor tail protein tail 1 23164 24063
YP_006560969.1 NC_018281_p28 holin phrog_297 holin lysis 1 24623 24916
YP_006560960.1 NC_018281_p19 pre neck appendage protein phrog_4775 pre-neck appendage protein connector 1 15343 18009
YP_006560952.1 NC_018281_p11 hypothetical protein phrog_5 tail completion or Neck1 protein connector 1 7086 7499
YP_006560979.1 NC_018281_p38 hypothetical protein phrog_5920 unknown function unknown function 1 32243 32452
YP_006560944.1 NC_018281_p3 portal protein phrog_64 portal protein head and packaging 1 1931 3367
YP_006560965.1 NC_018281_p24 exonuclease phrog_11953 exonuclease DNA, RNA and nucleotide metabolism 1 20458 20904
YP_006560966.1 NC_018281_p25 peptidoglycan hydrolase phrog_759 tail associated cell-wall hydrolase other 1 21288 23111
YP_006560946.1 NC_018281_p5 hypothetical protein phrog_2881 dCMP hydroxymethylase DNA, RNA and nucleotide metabolism 1 4385 4591
YP_006560995.1 NC_018281_p54 hypothetical protein phrog_1891 HNH endonuclease DNA, RNA and nucleotide metabolism 1 39355 39969
YP_006560958.1 NC_018281_p17 tail protein phrog_33 distal tail protein Dit tail 1 12520 13458
YP_006560992.1 NC_018281_p51 hypothetical protein phrog_201 Panton-Valentine leukocicin DNA, RNA and nucleotide metabolism 1 38303 38662
YP_006560986.1 NC_018281_p45 hypothetical protein phrog_2289 helicase loader DNA, RNA and nucleotide metabolism 1 35657 36010
YP_006561007.1 NC_018281_p66 RinA phrog_36 transcriptional regulator transcription regulation 1 42958 43374
YP_006560988.1 NC_018281_p47 hypothetical protein phrog_3161 unknown function unknown function 1 37244 37465
YP_006560972.1 NC_018281_p31 hypothetical protein phrog_11835 unknown function unknown function -1 28091 28636
YP_006560991.1 NC_018281_p50 transcriptional regulator phrog_13968 transcriptional regulator transcription regulation 1 38105 38302
YP_006560962.1 NC_018281_p21 hypothetical protein phrog_1766 tail fiber protein tail 1 19546 19884
YP_006560983.1 NC_018281_p42 single stranded DNA binding protein phrog_44 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 33855 34265
YP_006560999.1 NC_018281_p58 YopX family protein phrog_98 unknown function unknown function 1 40562 40951
YP_006560974.1 NC_018281_p33 hypothetical protein phrog_17674 unknown function unknown function -1 29202 29369
YP_006560964.1 NC_018281_p23 hypothetical protein phrog_2968 tail protein tail 1 20066 20473
YP_006560968.1 NC_018281_p27 hypothetical protein phrog_1766 tail fiber protein tail 1 24075 24428
YP_006560963.1 NC_018281_p22 hypothetical protein phrog_134 unknown function unknown function 1 19886 20026
YP_006560987.1 NC_018281_p46 DNA helicase phrog_19 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism 1 35997 37247
YP_006560993.1 NC_018281_p52 hypothetical protein phrog_1689 nucleotide kinase other 1 38659 39114
YP_006560996.1 NC_018281_p55 hypothetical protein phrog_3683 unknown function unknown function 1 39956 40153
YP_006561003.1 NC_018281_p62 dUTPase phrog_135 dUTPase DNA, RNA and nucleotide metabolism 1 41615 42157
YP_006560954.1 NC_018281_p13 major tail protein phrog_238 major tail protein tail 1 7936 8475
YP_006560981.1 NC_018281_p40 hypothetical protein phrog_7824 unknown function unknown function 1 32747 33022
YP_006561004.1 NC_018281_p63 hypothetical protein phrog_278 transcriptional regulator transcription regulation 1 42194 42406
YP_006560956.1 NC_018281_p15 tail protein phrog_1404 tail protein tail 1 9095 9397
YP_006561006.1 NC_018281_p65 hypothetical protein phrog_5723 acetyltransferase other 1 42722 42940
YP_006560984.1 NC_018281_p43 hypothetical protein phrog_398 unknown function unknown function 1 34279 34953
YP_006560977.1 NC_018281_p36 antirepressor phrog_63 anti-repressor Ant transcription regulation 1 31065 31820
YP_006560970.1 NC_018281_p29 amidase phrog_635 endolysin lysis 1 24929 26653
YP_006560978.1 NC_018281_p37 hypothetical protein phrog_4309 unknown function unknown function 1 31833 32027
YP_006560942.1 NC_018281_p1 small terminase subunit phrog_51 terminase small subunit head and packaging 1 242 676
YP_006560973.1 NC_018281_p32 hypothetical protein phrog_5375 unknown function unknown function -1 28638 29114