| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_018281 |
Definition |
Staphylococcus phage vB_SepiS-phiIPLA5, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Phietavirus. |
DB of origin |
REFSEQ |
Length |
43581 |
Host Name |
Staphylococcus epidermidis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
66 |
%GC |
34.72 |
Number of singletons |
1 |
Number of paralogs |
2 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_006561002.1 | NC_018281_p61 | hypothetical protein | phrog_8714 | unknown function | unknown function | 1 | 41443 | 41622 |
| YP_006560951.1 | NC_018281_p10 | head tail adaptor | phrog_25 | head closure Hc1 | connector | 1 | 6764 | 7093 |
| YP_006560989.1 | NC_018281_p48 | hypothetical protein | phrog_433 | unknown function | unknown function | 1 | 37443 | 37688 |
| YP_006560948.1 | NC_018281_p7 | major head protein | phrog_544 | major head protein | head and packaging | 1 | 5320 | 6150 |
| YP_006560990.1 | NC_018281_p49 | resolvase | phrog_140 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 37697 | 38104 |
| YP_006561005.1 | NC_018281_p64 | RinB | phrog_152 | RinB-like transcriptional activator | transcription regulation | 1 | 42403 | 42582 |
| YP_006560959.1 | NC_018281_p18 | virion associated hydrolase | phrog_663 | minor head protein | head and packaging | 1 | 13472 | 15328 |
| YP_006560971.1 | NC_018281_p30 | integrase | phrog_1 | integrase | integration and excision | -1 | 26983 | 28032 |
| YP_006560976.1 | NC_018281_p35 | hypothetical protein | phrog_6431 | unknown function | unknown function | 1 | 30610 | 30771 |
| YP_006560957.1 | NC_018281_p16 | tail tape measure protein | phrog_58 | tail length tape measure protein | tail | 1 | 9400 | 12504 |
| YP_006561000.1 | NC_018281_p59 | nuclease | phrog_452 | endonuclease | DNA, RNA and nucleotide metabolism | 1 | 40952 | 41296 |
| YP_006560949.1 | NC_018281_p8 | rho termination factor | phrog_390 | Arc-like repressor | transcription regulation | 1 | 6167 | 6457 |
| YP_006560994.1 | NC_018281_p53 | hypothetical protein | phrog_2044 | RNA polymerase beta subunit | DNA, RNA and nucleotide metabolism | 1 | 39119 | 39349 |
| YP_006560945.1 | NC_018281_p4 | minor capsid protein | phrog_115 | minor head protein | head and packaging | 1 | 3324 | 4277 |
| YP_006561001.1 | NC_018281_p60 | hypothetical protein | phrog_1034 | unknown function | unknown function | 1 | 41301 | 41453 |
| YP_006560982.1 | NC_018281_p41 | recombination protein | phrog_155 | Erf-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 33211 | 33855 |
| YP_006560953.1 | NC_018281_p12 | hypothetical protein | phrog_176 | tail terminator | connector | 1 | 7512 | 7949 |
| YP_006560980.1 | NC_018281_p39 | hypothetical protein | phrog_5815 | unknown function | unknown function | 1 | 32516 | 32692 |
| YP_006560975.1 | NC_018281_p34 | cro | phrog_3 | transcriptional repressor | transcription regulation | 1 | 30384 | 30596 |
| YP_006560997.1 | NC_018281_p56 | hypothetical protein | phrog_987 | unknown function | unknown function | 1 | 40140 | 40319 |
| YP_006560955.1 | NC_018281_p14 | tail protein | phrog_183 | tail chaperone protein | tail | 1 | 8538 | 9032 |
| YP_006560950.1 | NC_018281_p9 | DNA packaging protein | phrog_1161 | head-tail adaptor | connector | 1 | 6457 | 6771 |
| YP_006560985.1 | NC_018281_p44 | DNA replication protein | phrog_186 | DnaD-like helicase loader | DNA, RNA and nucleotide metabolism | 1 | 34950 | 35651 |
| YP_006560947.1 | NC_018281_p6 | scaffolding protein | phrog_194 | head scaffolding protein | head and packaging | 1 | 4706 | 5302 |
| YP_006560998.1 | NC_018281_p57 | hypothetical protein | singleton | unknown function | unknown function | 1 | 40336 | 40536 |
| YP_006560943.1 | NC_018281_p2 | large terminase subunit | phrog_2 | terminase large subunit | head and packaging | 1 | 660 | 1925 |
| YP_006560961.1 | NC_018281_p20 | hypothetical protein | phrog_257 | minor tail protein | tail | 1 | 18009 | 19541 |
| YP_006560967.1 | NC_018281_p26 | tail fiber protein | phrog_257 | minor tail protein | tail | 1 | 23164 | 24063 |
| YP_006560969.1 | NC_018281_p28 | holin | phrog_297 | holin | lysis | 1 | 24623 | 24916 |
| YP_006560960.1 | NC_018281_p19 | pre neck appendage protein | phrog_4775 | pre-neck appendage protein | connector | 1 | 15343 | 18009 |
| YP_006560952.1 | NC_018281_p11 | hypothetical protein | phrog_5 | tail completion or Neck1 protein | connector | 1 | 7086 | 7499 |
| YP_006560979.1 | NC_018281_p38 | hypothetical protein | phrog_5920 | unknown function | unknown function | 1 | 32243 | 32452 |
| YP_006560944.1 | NC_018281_p3 | portal protein | phrog_64 | portal protein | head and packaging | 1 | 1931 | 3367 |
| YP_006560965.1 | NC_018281_p24 | exonuclease | phrog_11953 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 20458 | 20904 |
| YP_006560966.1 | NC_018281_p25 | peptidoglycan hydrolase | phrog_759 | tail associated cell-wall hydrolase | other | 1 | 21288 | 23111 |
| YP_006560946.1 | NC_018281_p5 | hypothetical protein | phrog_2881 | dCMP hydroxymethylase | DNA, RNA and nucleotide metabolism | 1 | 4385 | 4591 |
| YP_006560995.1 | NC_018281_p54 | hypothetical protein | phrog_1891 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 39355 | 39969 |
| YP_006560958.1 | NC_018281_p17 | tail protein | phrog_33 | distal tail protein Dit | tail | 1 | 12520 | 13458 |
| YP_006560992.1 | NC_018281_p51 | hypothetical protein | phrog_201 | Panton-Valentine leukocicin | DNA, RNA and nucleotide metabolism | 1 | 38303 | 38662 |
| YP_006560986.1 | NC_018281_p45 | hypothetical protein | phrog_2289 | helicase loader | DNA, RNA and nucleotide metabolism | 1 | 35657 | 36010 |
| YP_006561007.1 | NC_018281_p66 | RinA | phrog_36 | transcriptional regulator | transcription regulation | 1 | 42958 | 43374 |
| YP_006560988.1 | NC_018281_p47 | hypothetical protein | phrog_3161 | unknown function | unknown function | 1 | 37244 | 37465 |
| YP_006560972.1 | NC_018281_p31 | hypothetical protein | phrog_11835 | unknown function | unknown function | -1 | 28091 | 28636 |
| YP_006560991.1 | NC_018281_p50 | transcriptional regulator | phrog_13968 | transcriptional regulator | transcription regulation | 1 | 38105 | 38302 |
| YP_006560962.1 | NC_018281_p21 | hypothetical protein | phrog_1766 | tail fiber protein | tail | 1 | 19546 | 19884 |
| YP_006560983.1 | NC_018281_p42 | single stranded DNA binding protein | phrog_44 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 33855 | 34265 |
| YP_006560999.1 | NC_018281_p58 | YopX family protein | phrog_98 | unknown function | unknown function | 1 | 40562 | 40951 |
| YP_006560974.1 | NC_018281_p33 | hypothetical protein | phrog_17674 | unknown function | unknown function | -1 | 29202 | 29369 |
| YP_006560964.1 | NC_018281_p23 | hypothetical protein | phrog_2968 | tail protein | tail | 1 | 20066 | 20473 |
| YP_006560968.1 | NC_018281_p27 | hypothetical protein | phrog_1766 | tail fiber protein | tail | 1 | 24075 | 24428 |
| YP_006560963.1 | NC_018281_p22 | hypothetical protein | phrog_134 | unknown function | unknown function | 1 | 19886 | 20026 |
| YP_006560987.1 | NC_018281_p46 | DNA helicase | phrog_19 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | 1 | 35997 | 37247 |
| YP_006560993.1 | NC_018281_p52 | hypothetical protein | phrog_1689 | nucleotide kinase | other | 1 | 38659 | 39114 |
| YP_006560996.1 | NC_018281_p55 | hypothetical protein | phrog_3683 | unknown function | unknown function | 1 | 39956 | 40153 |
| YP_006561003.1 | NC_018281_p62 | dUTPase | phrog_135 | dUTPase | DNA, RNA and nucleotide metabolism | 1 | 41615 | 42157 |
| YP_006560954.1 | NC_018281_p13 | major tail protein | phrog_238 | major tail protein | tail | 1 | 7936 | 8475 |
| YP_006560981.1 | NC_018281_p40 | hypothetical protein | phrog_7824 | unknown function | unknown function | 1 | 32747 | 33022 |
| YP_006561004.1 | NC_018281_p63 | hypothetical protein | phrog_278 | transcriptional regulator | transcription regulation | 1 | 42194 | 42406 |
| YP_006560956.1 | NC_018281_p15 | tail protein | phrog_1404 | tail protein | tail | 1 | 9095 | 9397 |
| YP_006561006.1 | NC_018281_p65 | hypothetical protein | phrog_5723 | acetyltransferase | other | 1 | 42722 | 42940 |
| YP_006560984.1 | NC_018281_p43 | hypothetical protein | phrog_398 | unknown function | unknown function | 1 | 34279 | 34953 |
| YP_006560977.1 | NC_018281_p36 | antirepressor | phrog_63 | anti-repressor Ant | transcription regulation | 1 | 31065 | 31820 |
| YP_006560970.1 | NC_018281_p29 | amidase | phrog_635 | endolysin | lysis | 1 | 24929 | 26653 |
| YP_006560978.1 | NC_018281_p37 | hypothetical protein | phrog_4309 | unknown function | unknown function | 1 | 31833 | 32027 |
| YP_006560942.1 | NC_018281_p1 | small terminase subunit | phrog_51 | terminase small subunit | head and packaging | 1 | 242 | 676 |
| YP_006560973.1 | NC_018281_p32 | hypothetical protein | phrog_5375 | unknown function | unknown function | -1 | 28638 | 29114 |