Genomic map of Staphylococcus virus IPLA7 (NC_018284)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_018284
Definition
Staphylococcus phage vB_SepiS-phiIPLA7, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Phietavirus.
DB of origin
REFSEQ
Length
42123
Host Name
Staphylococcus epidermidis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
59
%GC
34.75
Number of singletons
0
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_006561195.1 NC_018284_p33 antirepressor phrog_63 anti-repressor Ant transcription regulation 1 29544 30296
YP_006561164.1 NC_018284_p2 terminase large subunit phrog_2 terminase large subunit head and packaging 1 606 1868
YP_006561191.1 NC_018284_p29 hypothetical protein phrog_5610 unknown function unknown function -1 27510 28325
YP_006561221.1 NC_018284_p59 RinA phrog_36 transcriptional regulator transcription regulation 1 41497 41913
YP_006561194.1 NC_018284_p32 DNA binding protein phrog_3 transcriptional repressor transcription regulation 1 29286 29531
YP_006561176.1 NC_018284_p14 hypothetical protein phrog_1404 tail protein tail 1 8693 8995
YP_006561214.1 NC_018284_p52 hypothetical protein phrog_4380 unknown function unknown function 1 38652 38939
YP_006561167.1 NC_018284_p5 minor head protein phrog_194 head scaffolding protein head and packaging 1 4308 4901
YP_006561197.1 NC_018284_p35 hypothetical protein phrog_5815 unknown function unknown function 1 30571 30747
YP_006561210.1 NC_018284_p48 hypothetical protein phrog_1689 nucleotide kinase other 1 36890 37333
YP_006561212.1 NC_018284_p50 hypothetical protein phrog_987 unknown function unknown function 1 38064 38243
YP_006561196.1 NC_018284_p34 hypothetical protein phrog_25254 unknown function unknown function 1 30310 30477
YP_006561171.1 NC_018284_p9 head tail adaptor phrog_25 head closure Hc1 connector 1 6363 6692
YP_006561207.1 NC_018284_p45 resolvase phrog_140 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 35880 36287
YP_006561165.1 NC_018284_p3 portal protein phrog_64 portal protein head and packaging 1 1874 3310
YP_006561206.1 NC_018284_p44 hypothetical protein phrog_433 unknown function unknown function 1 35626 35871
YP_006561180.1 NC_018284_p18 pre neck appendage protein phrog_4775 pre-neck appendage protein connector 1 14941 17607
YP_006561190.1 NC_018284_p28 integrase phrog_95 integrase integration and excision -1 26082 27458
YP_006561192.1 NC_018284_p30 hypothetical protein phrog_87 metallo-protease other -1 28322 28771
YP_006561163.1 NC_018284_p1 terminase smal subunit phrog_2538 terminase small subunit head and packaging 1 239 619
YP_006561217.1 NC_018284_p55 DNA binding protein phrog_715 MazG-like pyrophosphatase other 1 39717 40040
YP_006561173.1 NC_018284_p11 hypothetical protein phrog_176 tail terminator connector 1 7111 7548
YP_006561213.1 NC_018284_p51 hypothetical protein phrog_467 unknown function unknown function 1 38262 38648
YP_006561184.1 NC_018284_p22 amidase phrog_759 tail associated cell-wall hydrolase other 1 20099 22000
YP_006561211.1 NC_018284_p49 endonuclease phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism 1 37336 38016
YP_006561205.1 NC_018284_p43 hypothetical protein phrog_3161 unknown function unknown function 1 35427 35648
YP_006561220.1 NC_018284_p58 hypothetical protein phrog_5723 acetyltransferase other 1 41261 41479
YP_006561193.1 NC_018284_p31 repressor phrog_8 transcriptional regulator transcription regulation -1 28806 29120
YP_006561169.1 NC_018284_p7 rho termination protein phrog_390 Arc-like repressor transcription regulation 1 5766 6056
YP_006561216.1 NC_018284_p54 hypothetical protein phrog_10928 unknown function unknown function 1 39333 39569
YP_006561179.1 NC_018284_p17 virion associated hydrolase phrog_663 minor head protein head and packaging 1 13070 14926
YP_006561181.1 NC_018284_p19 hypothetical protein phrog_257 minor tail protein tail 1 17607 19139
YP_006561218.1 NC_018284_p56 RinB phrog_152 RinB-like transcriptional activator transcription regulation 1 40538 40708
YP_006561198.1 NC_018284_p36 hypothetical protein phrog_7824 unknown function unknown function 1 30802 31077
YP_006561170.1 NC_018284_p8 head protein phrog_1161 head-tail adaptor connector 1 6056 6370
YP_006561201.1 NC_018284_p39 hypothetical protein phrog_398 unknown function unknown function 1 32376 33050
YP_006561204.1 NC_018284_p42 DNA helicase phrog_19 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism 1 34195 35430
YP_006561186.1 NC_018284_p24 hypothetical protein phrog_2981 unknown function unknown function 1 22563 23090
YP_006561188.1 NC_018284_p26 amidase phrog_489 endolysin lysis 1 23412 24794
YP_006561187.1 NC_018284_p25 holin phrog_263 holin lysis 1 23140 23412
YP_006561182.1 NC_018284_p20 hypothetical protein phrog_1766 tail fiber protein tail 1 19123 19482
YP_006561175.1 NC_018284_p13 hypothetical protein phrog_183 tail chaperone protein tail 1 8136 8630
YP_006561168.1 NC_018284_p6 major head protein phrog_544 major head protein head and packaging 1 4919 5749
YP_006561166.1 NC_018284_p4 minor head protein phrog_115 minor head protein head and packaging 1 3267 4214
YP_006561177.1 NC_018284_p15 tail tape measure protein phrog_58 tail length tape measure protein tail 1 8998 12102
YP_006561215.1 NC_018284_p53 hypothetical protein phrog_5723 acetyltransferase other 1 38929 39177
YP_006561208.1 NC_018284_p46 hypothetical protein phrog_6999 unknown function unknown function 1 36288 36479
YP_006561189.1 NC_018284_p27 hypothetical protein phrog_4538 unknown function unknown function 1 24872 25798
YP_006561219.1 NC_018284_p57 hypothetical protein phrog_2409 unknown function unknown function 1 40686 41129
YP_006561185.1 NC_018284_p23 hypothetical protein phrog_6487 unknown function unknown function 1 22054 22563
YP_006561178.1 NC_018284_p16 hypothetical protein phrog_33 distal tail protein Dit tail 1 12118 13056
YP_006561199.1 NC_018284_p37 erf superfamily protein phrog_155 Erf-like ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 31269 31940
YP_006561172.1 NC_018284_p10 hypothetical protein phrog_5 tail completion or Neck1 protein connector 1 6685 7098
YP_006561209.1 NC_018284_p47 hypothetical protein phrog_201 Panton-Valentine leukocicin DNA, RNA and nucleotide metabolism 1 36480 36893
YP_006561183.1 NC_018284_p21 hypothetical protein phrog_276 unknown function unknown function 1 19628 19960
YP_006561174.1 NC_018284_p12 major tail protein phrog_238 major tail protein tail 1 7535 8074
YP_006561200.1 NC_018284_p38 single stranded DNA binding protein phrog_44 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 31940 32362
YP_006561202.1 NC_018284_p40 replication protein phrog_186 DnaD-like helicase loader DNA, RNA and nucleotide metabolism 1 33043 33843
YP_006561203.1 NC_018284_p41 hypothetical protein phrog_2289 helicase loader DNA, RNA and nucleotide metabolism 1 33843 34202