| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_018284 |
Definition |
Staphylococcus phage vB_SepiS-phiIPLA7, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Phietavirus. |
DB of origin |
REFSEQ |
Length |
42123 |
Host Name |
Staphylococcus epidermidis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
59 |
%GC |
34.75 |
Number of singletons |
0 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_006561195.1 | NC_018284_p33 | antirepressor | phrog_63 | anti-repressor Ant | transcription regulation | 1 | 29544 | 30296 |
| YP_006561164.1 | NC_018284_p2 | terminase large subunit | phrog_2 | terminase large subunit | head and packaging | 1 | 606 | 1868 |
| YP_006561191.1 | NC_018284_p29 | hypothetical protein | phrog_5610 | unknown function | unknown function | -1 | 27510 | 28325 |
| YP_006561221.1 | NC_018284_p59 | RinA | phrog_36 | transcriptional regulator | transcription regulation | 1 | 41497 | 41913 |
| YP_006561194.1 | NC_018284_p32 | DNA binding protein | phrog_3 | transcriptional repressor | transcription regulation | 1 | 29286 | 29531 |
| YP_006561176.1 | NC_018284_p14 | hypothetical protein | phrog_1404 | tail protein | tail | 1 | 8693 | 8995 |
| YP_006561214.1 | NC_018284_p52 | hypothetical protein | phrog_4380 | unknown function | unknown function | 1 | 38652 | 38939 |
| YP_006561167.1 | NC_018284_p5 | minor head protein | phrog_194 | head scaffolding protein | head and packaging | 1 | 4308 | 4901 |
| YP_006561197.1 | NC_018284_p35 | hypothetical protein | phrog_5815 | unknown function | unknown function | 1 | 30571 | 30747 |
| YP_006561210.1 | NC_018284_p48 | hypothetical protein | phrog_1689 | nucleotide kinase | other | 1 | 36890 | 37333 |
| YP_006561212.1 | NC_018284_p50 | hypothetical protein | phrog_987 | unknown function | unknown function | 1 | 38064 | 38243 |
| YP_006561196.1 | NC_018284_p34 | hypothetical protein | phrog_25254 | unknown function | unknown function | 1 | 30310 | 30477 |
| YP_006561171.1 | NC_018284_p9 | head tail adaptor | phrog_25 | head closure Hc1 | connector | 1 | 6363 | 6692 |
| YP_006561207.1 | NC_018284_p45 | resolvase | phrog_140 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 35880 | 36287 |
| YP_006561165.1 | NC_018284_p3 | portal protein | phrog_64 | portal protein | head and packaging | 1 | 1874 | 3310 |
| YP_006561206.1 | NC_018284_p44 | hypothetical protein | phrog_433 | unknown function | unknown function | 1 | 35626 | 35871 |
| YP_006561180.1 | NC_018284_p18 | pre neck appendage protein | phrog_4775 | pre-neck appendage protein | connector | 1 | 14941 | 17607 |
| YP_006561190.1 | NC_018284_p28 | integrase | phrog_95 | integrase | integration and excision | -1 | 26082 | 27458 |
| YP_006561192.1 | NC_018284_p30 | hypothetical protein | phrog_87 | metallo-protease | other | -1 | 28322 | 28771 |
| YP_006561163.1 | NC_018284_p1 | terminase smal subunit | phrog_2538 | terminase small subunit | head and packaging | 1 | 239 | 619 |
| YP_006561217.1 | NC_018284_p55 | DNA binding protein | phrog_715 | MazG-like pyrophosphatase | other | 1 | 39717 | 40040 |
| YP_006561173.1 | NC_018284_p11 | hypothetical protein | phrog_176 | tail terminator | connector | 1 | 7111 | 7548 |
| YP_006561213.1 | NC_018284_p51 | hypothetical protein | phrog_467 | unknown function | unknown function | 1 | 38262 | 38648 |
| YP_006561184.1 | NC_018284_p22 | amidase | phrog_759 | tail associated cell-wall hydrolase | other | 1 | 20099 | 22000 |
| YP_006561211.1 | NC_018284_p49 | endonuclease | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 37336 | 38016 |
| YP_006561205.1 | NC_018284_p43 | hypothetical protein | phrog_3161 | unknown function | unknown function | 1 | 35427 | 35648 |
| YP_006561220.1 | NC_018284_p58 | hypothetical protein | phrog_5723 | acetyltransferase | other | 1 | 41261 | 41479 |
| YP_006561193.1 | NC_018284_p31 | repressor | phrog_8 | transcriptional regulator | transcription regulation | -1 | 28806 | 29120 |
| YP_006561169.1 | NC_018284_p7 | rho termination protein | phrog_390 | Arc-like repressor | transcription regulation | 1 | 5766 | 6056 |
| YP_006561216.1 | NC_018284_p54 | hypothetical protein | phrog_10928 | unknown function | unknown function | 1 | 39333 | 39569 |
| YP_006561179.1 | NC_018284_p17 | virion associated hydrolase | phrog_663 | minor head protein | head and packaging | 1 | 13070 | 14926 |
| YP_006561181.1 | NC_018284_p19 | hypothetical protein | phrog_257 | minor tail protein | tail | 1 | 17607 | 19139 |
| YP_006561218.1 | NC_018284_p56 | RinB | phrog_152 | RinB-like transcriptional activator | transcription regulation | 1 | 40538 | 40708 |
| YP_006561198.1 | NC_018284_p36 | hypothetical protein | phrog_7824 | unknown function | unknown function | 1 | 30802 | 31077 |
| YP_006561170.1 | NC_018284_p8 | head protein | phrog_1161 | head-tail adaptor | connector | 1 | 6056 | 6370 |
| YP_006561201.1 | NC_018284_p39 | hypothetical protein | phrog_398 | unknown function | unknown function | 1 | 32376 | 33050 |
| YP_006561204.1 | NC_018284_p42 | DNA helicase | phrog_19 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | 1 | 34195 | 35430 |
| YP_006561186.1 | NC_018284_p24 | hypothetical protein | phrog_2981 | unknown function | unknown function | 1 | 22563 | 23090 |
| YP_006561188.1 | NC_018284_p26 | amidase | phrog_489 | endolysin | lysis | 1 | 23412 | 24794 |
| YP_006561187.1 | NC_018284_p25 | holin | phrog_263 | holin | lysis | 1 | 23140 | 23412 |
| YP_006561182.1 | NC_018284_p20 | hypothetical protein | phrog_1766 | tail fiber protein | tail | 1 | 19123 | 19482 |
| YP_006561175.1 | NC_018284_p13 | hypothetical protein | phrog_183 | tail chaperone protein | tail | 1 | 8136 | 8630 |
| YP_006561168.1 | NC_018284_p6 | major head protein | phrog_544 | major head protein | head and packaging | 1 | 4919 | 5749 |
| YP_006561166.1 | NC_018284_p4 | minor head protein | phrog_115 | minor head protein | head and packaging | 1 | 3267 | 4214 |
| YP_006561177.1 | NC_018284_p15 | tail tape measure protein | phrog_58 | tail length tape measure protein | tail | 1 | 8998 | 12102 |
| YP_006561215.1 | NC_018284_p53 | hypothetical protein | phrog_5723 | acetyltransferase | other | 1 | 38929 | 39177 |
| YP_006561208.1 | NC_018284_p46 | hypothetical protein | phrog_6999 | unknown function | unknown function | 1 | 36288 | 36479 |
| YP_006561189.1 | NC_018284_p27 | hypothetical protein | phrog_4538 | unknown function | unknown function | 1 | 24872 | 25798 |
| YP_006561219.1 | NC_018284_p57 | hypothetical protein | phrog_2409 | unknown function | unknown function | 1 | 40686 | 41129 |
| YP_006561185.1 | NC_018284_p23 | hypothetical protein | phrog_6487 | unknown function | unknown function | 1 | 22054 | 22563 |
| YP_006561178.1 | NC_018284_p16 | hypothetical protein | phrog_33 | distal tail protein Dit | tail | 1 | 12118 | 13056 |
| YP_006561199.1 | NC_018284_p37 | erf superfamily protein | phrog_155 | Erf-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 31269 | 31940 |
| YP_006561172.1 | NC_018284_p10 | hypothetical protein | phrog_5 | tail completion or Neck1 protein | connector | 1 | 6685 | 7098 |
| YP_006561209.1 | NC_018284_p47 | hypothetical protein | phrog_201 | Panton-Valentine leukocicin | DNA, RNA and nucleotide metabolism | 1 | 36480 | 36893 |
| YP_006561183.1 | NC_018284_p21 | hypothetical protein | phrog_276 | unknown function | unknown function | 1 | 19628 | 19960 |
| YP_006561174.1 | NC_018284_p12 | major tail protein | phrog_238 | major tail protein | tail | 1 | 7535 | 8074 |
| YP_006561200.1 | NC_018284_p38 | single stranded DNA binding protein | phrog_44 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 31940 | 32362 |
| YP_006561202.1 | NC_018284_p40 | replication protein | phrog_186 | DnaD-like helicase loader | DNA, RNA and nucleotide metabolism | 1 | 33043 | 33843 |
| YP_006561203.1 | NC_018284_p41 | hypothetical protein | phrog_2289 | helicase loader | DNA, RNA and nucleotide metabolism | 1 | 33843 | 34202 |