Genomic map of Streptococcus phage YMC-2011 (NC_018285)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_018285
Definition
Streptococcus phage YMC-2011, complete genome.
Molecule type
DNA
Genome structure
circular
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Moineauvirus; unclassified Moineauvirus.
DB of origin
REFSEQ
Length
40758
Host Name
Streptococcus salivarius
Host domain
Bacteria
Is prophage?
undef
Number of proteins
55
%GC
41.23
Number of singletons
6
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_006561242.1 NC_018285_p21 hypothetical protein phrog_124 Sak4-like ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 14917 15618
YP_006561224.1 NC_018285_p3 hypothetical protein phrog_2566 unknown function unknown function 1 4931 5200
YP_006561239.1 NC_018285_p18 lpxtg cell wall surface protein, collagen binding domain protein singleton unknown function unknown function 1 12358 14088
YP_006561264.1 NC_018285_p43 portal protein phrog_12 portal protein head and packaging 1 28391 29542
YP_006561261.1 NC_018285_p40 terminase small subunit phrog_4914 terminase large subunit head and packaging 1 26317 27006
YP_006561240.1 NC_018285_p19 hypothetical protein phrog_2486 unknown function unknown function 1 14091 14411
YP_006561267.1 NC_018285_p46 DNA packaging protein phrog_40 head-tail adaptor Ad1 connector 1 31418 31732
YP_006561269.1 NC_018285_p48 tail component protein phrog_5 tail completion or Neck1 protein connector 1 32082 32510
YP_006561238.1 NC_018285_p17 hypothetical protein phrog_1022 unknown function unknown function 1 11998 12153
YP_006561276.1 NC_018285_p55 tail component protein phrog_202 distal tail protein Dit tail 1 39141 40697
YP_006561262.1 NC_018285_p41 terminase large subunit phrog_9 terminase large subunit head and packaging 1 27018 28190
YP_006561248.1 NC_018285_p27 hypothetical protein phrog_1982 unknown function unknown function 1 20386 20604
YP_006561258.1 NC_018285_p37 hypothetical protein phrog_3180 Arc-like repressor transcription regulation -1 24894 25034
YP_006561266.1 NC_018285_p45 major head protein phrog_10 major head protein head and packaging 1 30212 31402
YP_006561259.1 NC_018285_p38 hypothetical protein phrog_681 endonuclease DNA, RNA and nucleotide metabolism 1 25143 26021
YP_006561226.1 NC_018285_p5 holin phrog_297 holin lysis 1 5632 5853
YP_006561255.1 NC_018285_p34 Apaf-1 related killer DARK phrog_36 transcriptional regulator transcription regulation 1 23202 23600
YP_006561252.1 NC_018285_p31 hypothetical protein phrog_884 unknown function unknown function 1 21472 21762
YP_006561223.1 NC_018285_p2 hypothetical protein phrog_372 tail protein tail 1 2866 4911
YP_006561232.1 NC_018285_p11 hypothetical protein phrog_8 transcriptional regulator transcription regulation -1 9583 9927
YP_006561249.1 NC_018285_p28 hypothetical protein singleton unknown function unknown function 1 20592 20774
YP_006561246.1 NC_018285_p25 primase phrog_864 DNA primase DNA, RNA and nucleotide metabolism 1 18256 19815
YP_006561244.1 NC_018285_p23 hypothetical protein phrog_378 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 16994 17467
YP_006561243.1 NC_018285_p22 Helicase phrog_16 DNA helicase DNA, RNA and nucleotide metabolism 1 15632 16987
YP_006561231.1 NC_018285_p10 cI-like repressor, metallo-prtoeinase motif protein phrog_87 metallo-protease other -1 9211 9576
YP_006561257.1 NC_018285_p36 hypothetical protein phrog_83 terminase small subunit head and packaging 1 24298 24879
YP_006561256.1 NC_018285_p35 hypothetical protein phrog_144 HNH endonuclease DNA, RNA and nucleotide metabolism 1 23804 24238
YP_006561274.1 NC_018285_p53 minor tail protein phrog_21157 minor tail protein tail 1 34170 36491
YP_006561225.1 NC_018285_p4 holin phrog_199 holin lysis 1 5190 5618
YP_006561222.1 NC_018285_p1 host specificity protein phrog_588 tail fiber protein and host specificity tail 1 5 2863
YP_006561273.1 NC_018285_p52 hypothetical protein phrog_2629 unknown function unknown function 1 33997 34140
YP_006561250.1 NC_018285_p29 hypothetical protein phrog_14577 unknown function unknown function 1 20808 20993
YP_006561236.1 NC_018285_p15 hypothetical protein singleton unknown function unknown function 1 11446 11559
YP_006561247.1 NC_018285_p26 hypothetical protein phrog_93 endonuclease DNA, RNA and nucleotide metabolism 1 20058 20381
YP_006561271.1 NC_018285_p50 major tail protein phrog_88 major tail protein tail 1 32905 33522
YP_006561265.1 NC_018285_p44 Predicted clp-protease phrog_94 head maturation protease head and packaging 1 29529 30197
YP_006561245.1 NC_018285_p24 hypothetical protein phrog_695 DNA polymerase/primase DNA, RNA and nucleotide metabolism 1 17472 18290
YP_006561229.1 NC_018285_p8 integrase phrog_1 integrase integration and excision -1 7589 8650
YP_006561234.1 NC_018285_p13 hypothetical protein singleton unknown function unknown function -1 10426 10641
YP_006561235.1 NC_018285_p14 prophage LambdaSa1, antirepressor, phrog_63 anti-repressor Ant transcription regulation 1 10702 11436
YP_006561253.1 NC_018285_p32 hypothetical protein phrog_98 unknown function unknown function 1 21801 22148
YP_006561263.1 NC_018285_p42 head-tail joining protein phrog_1142 unknown function unknown function 1 28194 28373
YP_006561230.1 NC_018285_p9 hypothetical protein phrog_30975 unknown function unknown function -1 8751 9206
YP_006561268.1 NC_018285_p47 capsid-tail joining protein phrog_25 head closure Hc1 connector 1 31732 32082
YP_006561227.1 NC_018285_p6 phage-associated cell wall hydrolase phrog_1309 endolysin lysis 1 5855 6601
YP_006561237.1 NC_018285_p16 hypothetical protein phrog_668 HTH DNA binding protein DNA, RNA and nucleotide metabolism 1 11560 11841
YP_006561260.1 NC_018285_p39 hypothetical protein singleton unknown function unknown function 1 26089 26280
YP_006561233.1 NC_018285_p12 hypothetical protein phrog_3 transcriptional repressor transcription regulation 1 10079 10282
YP_006561270.1 NC_018285_p49 tail component protein phrog_1217 tail protein tail 1 32515 32886
YP_006561228.1 NC_018285_p7 hypothetical protein singleton unknown function unknown function 1 7010 7192
YP_006561275.1 NC_018285_p54 minor tail protein phrog_4070 tail length tape measure protein tail 1 36463 39135
YP_006561241.1 NC_018285_p20 hypothetical protein phrog_253 Mu Gam-like end protection DNA, RNA and nucleotide metabolism 1 14447 14920
YP_006561254.1 NC_018285_p33 hypothetical protein phrog_1814 unknown function unknown function 1 22145 22852
YP_006561251.1 NC_018285_p30 hypothetical protein phrog_1489 unknown function unknown function 1 20990 21148
YP_006561272.1 NC_018285_p51 tail component protein phrog_1346 tail protein tail 1 33593 33949