| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_018285 |
Definition |
Streptococcus phage YMC-2011, complete genome. |
Molecule type |
DNA |
Genome structure |
circular |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Moineauvirus; unclassified Moineauvirus. |
DB of origin |
REFSEQ |
Length |
40758 |
Host Name |
Streptococcus salivarius |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
55 |
%GC |
41.23 |
Number of singletons |
6 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_006561242.1 | NC_018285_p21 | hypothetical protein | phrog_124 | Sak4-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 14917 | 15618 |
| YP_006561224.1 | NC_018285_p3 | hypothetical protein | phrog_2566 | unknown function | unknown function | 1 | 4931 | 5200 |
| YP_006561239.1 | NC_018285_p18 | lpxtg cell wall surface protein, collagen binding domain protein | singleton | unknown function | unknown function | 1 | 12358 | 14088 |
| YP_006561264.1 | NC_018285_p43 | portal protein | phrog_12 | portal protein | head and packaging | 1 | 28391 | 29542 |
| YP_006561261.1 | NC_018285_p40 | terminase small subunit | phrog_4914 | terminase large subunit | head and packaging | 1 | 26317 | 27006 |
| YP_006561240.1 | NC_018285_p19 | hypothetical protein | phrog_2486 | unknown function | unknown function | 1 | 14091 | 14411 |
| YP_006561267.1 | NC_018285_p46 | DNA packaging protein | phrog_40 | head-tail adaptor Ad1 | connector | 1 | 31418 | 31732 |
| YP_006561269.1 | NC_018285_p48 | tail component protein | phrog_5 | tail completion or Neck1 protein | connector | 1 | 32082 | 32510 |
| YP_006561238.1 | NC_018285_p17 | hypothetical protein | phrog_1022 | unknown function | unknown function | 1 | 11998 | 12153 |
| YP_006561276.1 | NC_018285_p55 | tail component protein | phrog_202 | distal tail protein Dit | tail | 1 | 39141 | 40697 |
| YP_006561262.1 | NC_018285_p41 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 27018 | 28190 |
| YP_006561248.1 | NC_018285_p27 | hypothetical protein | phrog_1982 | unknown function | unknown function | 1 | 20386 | 20604 |
| YP_006561258.1 | NC_018285_p37 | hypothetical protein | phrog_3180 | Arc-like repressor | transcription regulation | -1 | 24894 | 25034 |
| YP_006561266.1 | NC_018285_p45 | major head protein | phrog_10 | major head protein | head and packaging | 1 | 30212 | 31402 |
| YP_006561259.1 | NC_018285_p38 | hypothetical protein | phrog_681 | endonuclease | DNA, RNA and nucleotide metabolism | 1 | 25143 | 26021 |
| YP_006561226.1 | NC_018285_p5 | holin | phrog_297 | holin | lysis | 1 | 5632 | 5853 |
| YP_006561255.1 | NC_018285_p34 | Apaf-1 related killer DARK | phrog_36 | transcriptional regulator | transcription regulation | 1 | 23202 | 23600 |
| YP_006561252.1 | NC_018285_p31 | hypothetical protein | phrog_884 | unknown function | unknown function | 1 | 21472 | 21762 |
| YP_006561223.1 | NC_018285_p2 | hypothetical protein | phrog_372 | tail protein | tail | 1 | 2866 | 4911 |
| YP_006561232.1 | NC_018285_p11 | hypothetical protein | phrog_8 | transcriptional regulator | transcription regulation | -1 | 9583 | 9927 |
| YP_006561249.1 | NC_018285_p28 | hypothetical protein | singleton | unknown function | unknown function | 1 | 20592 | 20774 |
| YP_006561246.1 | NC_018285_p25 | primase | phrog_864 | DNA primase | DNA, RNA and nucleotide metabolism | 1 | 18256 | 19815 |
| YP_006561244.1 | NC_018285_p23 | hypothetical protein | phrog_378 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 16994 | 17467 |
| YP_006561243.1 | NC_018285_p22 | Helicase | phrog_16 | DNA helicase | DNA, RNA and nucleotide metabolism | 1 | 15632 | 16987 |
| YP_006561231.1 | NC_018285_p10 | cI-like repressor, metallo-prtoeinase motif protein | phrog_87 | metallo-protease | other | -1 | 9211 | 9576 |
| YP_006561257.1 | NC_018285_p36 | hypothetical protein | phrog_83 | terminase small subunit | head and packaging | 1 | 24298 | 24879 |
| YP_006561256.1 | NC_018285_p35 | hypothetical protein | phrog_144 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 23804 | 24238 |
| YP_006561274.1 | NC_018285_p53 | minor tail protein | phrog_21157 | minor tail protein | tail | 1 | 34170 | 36491 |
| YP_006561225.1 | NC_018285_p4 | holin | phrog_199 | holin | lysis | 1 | 5190 | 5618 |
| YP_006561222.1 | NC_018285_p1 | host specificity protein | phrog_588 | tail fiber protein and host specificity | tail | 1 | 5 | 2863 |
| YP_006561273.1 | NC_018285_p52 | hypothetical protein | phrog_2629 | unknown function | unknown function | 1 | 33997 | 34140 |
| YP_006561250.1 | NC_018285_p29 | hypothetical protein | phrog_14577 | unknown function | unknown function | 1 | 20808 | 20993 |
| YP_006561236.1 | NC_018285_p15 | hypothetical protein | singleton | unknown function | unknown function | 1 | 11446 | 11559 |
| YP_006561247.1 | NC_018285_p26 | hypothetical protein | phrog_93 | endonuclease | DNA, RNA and nucleotide metabolism | 1 | 20058 | 20381 |
| YP_006561271.1 | NC_018285_p50 | major tail protein | phrog_88 | major tail protein | tail | 1 | 32905 | 33522 |
| YP_006561265.1 | NC_018285_p44 | Predicted clp-protease | phrog_94 | head maturation protease | head and packaging | 1 | 29529 | 30197 |
| YP_006561245.1 | NC_018285_p24 | hypothetical protein | phrog_695 | DNA polymerase/primase | DNA, RNA and nucleotide metabolism | 1 | 17472 | 18290 |
| YP_006561229.1 | NC_018285_p8 | integrase | phrog_1 | integrase | integration and excision | -1 | 7589 | 8650 |
| YP_006561234.1 | NC_018285_p13 | hypothetical protein | singleton | unknown function | unknown function | -1 | 10426 | 10641 |
| YP_006561235.1 | NC_018285_p14 | prophage LambdaSa1, antirepressor, | phrog_63 | anti-repressor Ant | transcription regulation | 1 | 10702 | 11436 |
| YP_006561253.1 | NC_018285_p32 | hypothetical protein | phrog_98 | unknown function | unknown function | 1 | 21801 | 22148 |
| YP_006561263.1 | NC_018285_p42 | head-tail joining protein | phrog_1142 | unknown function | unknown function | 1 | 28194 | 28373 |
| YP_006561230.1 | NC_018285_p9 | hypothetical protein | phrog_30975 | unknown function | unknown function | -1 | 8751 | 9206 |
| YP_006561268.1 | NC_018285_p47 | capsid-tail joining protein | phrog_25 | head closure Hc1 | connector | 1 | 31732 | 32082 |
| YP_006561227.1 | NC_018285_p6 | phage-associated cell wall hydrolase | phrog_1309 | endolysin | lysis | 1 | 5855 | 6601 |
| YP_006561237.1 | NC_018285_p16 | hypothetical protein | phrog_668 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 11560 | 11841 |
| YP_006561260.1 | NC_018285_p39 | hypothetical protein | singleton | unknown function | unknown function | 1 | 26089 | 26280 |
| YP_006561233.1 | NC_018285_p12 | hypothetical protein | phrog_3 | transcriptional repressor | transcription regulation | 1 | 10079 | 10282 |
| YP_006561270.1 | NC_018285_p49 | tail component protein | phrog_1217 | tail protein | tail | 1 | 32515 | 32886 |
| YP_006561228.1 | NC_018285_p7 | hypothetical protein | singleton | unknown function | unknown function | 1 | 7010 | 7192 |
| YP_006561275.1 | NC_018285_p54 | minor tail protein | phrog_4070 | tail length tape measure protein | tail | 1 | 36463 | 39135 |
| YP_006561241.1 | NC_018285_p20 | hypothetical protein | phrog_253 | Mu Gam-like end protection | DNA, RNA and nucleotide metabolism | 1 | 14447 | 14920 |
| YP_006561254.1 | NC_018285_p33 | hypothetical protein | phrog_1814 | unknown function | unknown function | 1 | 22145 | 22852 |
| YP_006561251.1 | NC_018285_p30 | hypothetical protein | phrog_1489 | unknown function | unknown function | 1 | 20990 | 21148 |
| YP_006561272.1 | NC_018285_p51 | tail component protein | phrog_1346 | tail protein | tail | 1 | 33593 | 33949 |